Wall clock time and date at job start Tue Mar 31 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47278 * 2 1 4 4 C 1.52997 * 109.47059 * 239.99507 * 2 1 3 5 5 C 1.53000 * 109.47217 * 159.76796 * 4 2 1 6 6 C 1.50697 * 109.47429 * 185.69410 * 5 4 2 7 7 H 1.08003 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00234 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99580 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00153 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47347 * 60.00159 * 10 8 6 12 12 H 1.48498 * 109.47319 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47435 * 300.00287 * 10 8 6 14 14 N 1.46906 * 109.46785 * 119.99640 * 2 1 3 15 15 C 1.46901 * 110.99565 * 151.38421 * 14 2 1 16 16 C 1.46898 * 110.99824 * 275.33727 * 14 2 1 17 17 C 1.53004 * 109.47349 * 295.31145 * 16 14 2 18 18 C 1.52997 * 109.47482 * 55.31223 * 16 14 2 19 19 C 1.53001 * 109.46918 * 175.31532 * 16 14 2 20 20 C 1.50697 * 109.47247 * 179.97438 * 19 16 14 21 21 C 1.38234 * 120.00482 * 269.72943 * 20 19 16 22 22 C 1.38231 * 120.00021 * 179.76583 * 21 20 19 23 23 C 1.38230 * 120.00115 * 0.48425 * 22 21 20 24 24 C 1.38233 * 120.00054 * 359.78921 * 23 22 21 25 25 C 1.38233 * 119.99906 * 359.95672 * 24 23 22 26 26 H 1.09007 * 109.47191 * 52.64116 * 1 2 3 27 27 H 1.09000 * 109.47506 * 172.64823 * 1 2 3 28 28 H 1.09006 * 109.47432 * 292.64826 * 1 2 3 29 29 H 1.09002 * 109.47489 * 279.76773 * 4 2 1 30 30 H 1.09000 * 109.47277 * 39.77075 * 4 2 1 31 31 H 1.09005 * 109.47376 * 305.70076 * 5 4 2 32 32 H 1.09004 * 109.46684 * 65.69627 * 5 4 2 33 33 H 0.97002 * 119.99163 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47040 * 69.78438 * 15 14 2 35 35 H 1.08994 * 109.47167 * 189.77945 * 15 14 2 36 36 H 1.08996 * 109.47498 * 309.78074 * 15 14 2 37 37 H 1.09003 * 109.46937 * 64.76884 * 17 16 14 38 38 H 1.08992 * 109.47203 * 184.76868 * 17 16 14 39 39 H 1.09003 * 109.47249 * 304.77394 * 17 16 14 40 40 H 1.09006 * 109.46650 * 51.53891 * 18 16 14 41 41 H 1.08997 * 109.47356 * 171.52837 * 18 16 14 42 42 H 1.08995 * 109.47364 * 291.53963 * 18 16 14 43 43 H 1.08996 * 109.46886 * 299.99857 * 19 16 14 44 44 H 1.09000 * 109.47149 * 60.00106 * 19 16 14 45 45 H 1.08002 * 119.99823 * 359.97438 * 21 20 19 46 46 H 1.08001 * 120.00128 * 180.25270 * 22 21 20 47 47 H 1.08010 * 120.00379 * 179.76949 * 23 22 21 48 48 H 1.08005 * 119.99948 * 179.97438 * 24 23 22 49 49 H 1.08005 * 119.99865 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.4860 -0.3042 -1.5243 6 6 3.9423 -0.9041 -2.8293 7 1 3.2681 -1.5208 -3.4051 8 6 5.2201 -0.6647 -3.2888 9 7 6.0408 0.0867 -2.5878 10 14 5.7853 -1.4077 -4.9066 11 1 4.9123 -0.9231 -6.0058 12 1 7.1889 -1.0030 -5.1736 13 1 5.7044 -2.8883 -4.8265 14 7 2.0196 -0.6925 1.1995 15 6 3.3301 -1.3088 0.9534 16 6 2.0747 0.2207 2.3489 17 6 3.1068 1.3178 2.0796 18 6 0.6993 0.8559 2.5622 19 6 2.4758 -0.5602 3.6019 20 6 2.5330 0.3767 4.7809 21 6 3.7143 1.0230 5.0935 22 6 3.7654 1.8861 6.1721 23 6 2.6380 2.0952 6.9440 24 6 1.4582 1.4445 6.6348 25 6 1.4056 0.5854 5.5531 26 1 -0.3634 0.6236 -0.8169 27 1 -0.3634 -1.0192 -0.1315 28 1 -0.3634 0.3957 0.9485 29 1 1.9967 -1.7988 -1.0897 30 1 1.4164 -0.4550 -2.1026 31 1 3.5458 0.7826 -1.5834 32 1 4.1266 -0.6600 -0.7173 33 1 6.9399 0.2548 -2.9109 34 1 4.0845 -0.5290 0.8491 35 1 3.5902 -1.9561 1.7909 36 1 3.2881 -1.8986 0.0378 37 1 2.7778 1.9273 1.2380 38 1 3.2091 1.9455 2.9647 39 1 4.0685 0.8620 1.8441 40 1 -0.0592 0.0741 2.6042 41 1 0.6980 1.4139 3.4985 42 1 0.4790 1.5317 1.7359 43 1 1.7406 -1.3417 3.7938 44 1 3.4558 -1.0126 3.4500 45 1 4.5964 0.8563 4.4930 46 1 4.6872 2.3942 6.4139 47 1 2.6788 2.7667 7.7890 48 1 0.5774 1.6075 7.2383 49 1 0.4837 0.0774 5.3113 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498270.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:33 Heat of formation + Delta-G solvation = 26.782943 kcal Electronic energy + Delta-G solvation = -24192.554911 eV Core-core repulsion = 21119.538014 eV Total energy + Delta-G solvation = -3073.016897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31748 -39.73033 -36.52530 -34.78689 -32.63443 -32.33967 -31.73833 -30.78640 -28.24704 -27.51695 -26.76702 -26.09554 -23.33007 -23.14140 -22.57071 -21.10968 -19.50659 -18.29582 -17.65134 -17.30410 -16.66147 -16.40351 -16.10981 -15.96474 -15.37077 -15.09899 -14.61682 -14.40157 -14.27608 -14.12289 -14.00937 -13.66095 -13.49577 -13.36655 -13.11093 -12.91529 -12.82861 -12.63398 -12.50173 -12.42842 -12.25499 -12.03755 -12.00277 -11.80996 -11.71534 -11.59520 -11.52658 -11.29864 -11.06159 -10.70265 -10.43959 -9.71257 -9.49961 -9.04421 -8.18482 -6.27878 0.51677 0.56779 1.37676 1.40123 1.47949 2.40262 2.86435 3.09079 3.14064 3.85945 3.97274 4.01471 4.09464 4.18449 4.23257 4.29201 4.35122 4.38402 4.51465 4.52449 4.59114 4.66926 4.71402 4.75317 4.80919 4.87365 4.91966 4.96514 4.99155 5.03450 5.06553 5.11075 5.15261 5.19926 5.24805 5.27647 5.32865 5.35816 5.49017 5.51688 5.62310 5.65269 5.69539 5.74892 5.82961 5.90381 6.18802 6.27500 6.28816 6.39816 6.88666 7.39653 8.92108 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.003668 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.057634 B = 7632.405515 C = 8375.696106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 H 0.029 0.971 4 C -0.102 4.102 5 C 0.006 3.994 6 C -0.541 4.541 7 H 0.053 0.947 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.514 5.514 15 C 0.015 3.985 16 C 0.116 3.884 17 C -0.178 4.178 18 C -0.142 4.142 19 C -0.063 4.063 20 C -0.079 4.079 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.120 4.120 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.048 0.952 31 H -0.027 1.027 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.131 0.869 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 2.282 19.200 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 H 0.047 0.953 4 C -0.140 4.140 5 C -0.031 4.031 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.238 5.238 15 C -0.133 4.133 16 C 0.026 3.974 17 C -0.236 4.236 18 C -0.199 4.199 19 C -0.101 4.101 20 C -0.079 4.079 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.066 0.934 31 H -0.009 1.009 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.149 0.851 47 H 0.157 0.843 48 H 0.161 0.839 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.702 1.966 19.290 22.148 hybrid contribution 1.662 0.529 -1.542 2.328 sum -9.040 2.495 17.749 20.074 Atomic orbital electron populations 1.22306 0.93040 1.02201 1.03344 1.21721 0.96482 0.95336 0.89195 0.95276 1.21719 0.96827 0.99560 0.95857 1.19701 0.93029 0.93789 0.96578 1.21700 0.98189 1.30782 1.07265 0.92835 1.25892 0.97015 0.95706 1.00935 1.70090 1.07227 1.39540 1.40278 0.85599 0.77173 0.79158 0.79718 1.19525 1.20877 1.19163 1.62510 1.25270 1.31828 1.04213 1.22879 0.89950 0.98640 1.01805 1.20975 0.95644 0.90487 0.90275 1.22507 0.99690 0.99924 1.01511 1.22250 0.95072 1.00653 1.01890 1.20579 1.02355 0.96531 0.90601 1.19840 0.94000 0.97756 0.96308 1.21201 0.97842 0.97995 0.97999 1.21363 0.99535 0.98493 0.95432 1.21428 0.92974 1.00309 1.00283 1.21447 0.98743 0.96674 0.97344 1.21272 0.98075 0.99137 0.95263 0.92960 0.92447 0.88994 0.92320 0.93371 1.00906 0.94584 0.92983 0.96157 0.91211 0.91195 0.94184 0.90902 0.93967 0.90389 0.91053 0.92571 0.89526 0.91910 0.87026 0.85093 0.84257 0.83939 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.78 71.98 0.63 -3.62 16 2 C 0.08 2.84 1.88 44.91 0.08 2.92 16 3 H 0.03 1.14 5.45 -2.39 -0.01 1.13 16 4 C -0.10 -4.33 4.21 30.59 0.13 -4.21 16 5 C 0.01 0.30 4.17 29.85 0.12 0.42 16 6 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 7 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 8 C 0.00 0.12 5.46 84.65 0.46 0.59 16 9 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 10 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 N -0.51 -16.54 4.50 -847.52 -3.81 -20.35 16 15 C 0.01 0.55 6.95 127.69 0.89 1.44 16 16 C 0.12 3.15 0.47 3.53 0.00 3.16 16 17 C -0.18 -5.56 7.47 71.98 0.54 -5.02 16 18 C -0.14 -3.23 6.43 71.98 0.46 -2.77 16 19 C -0.06 -1.52 4.24 29.85 0.13 -1.39 16 20 C -0.08 -1.72 4.03 -19.87 -0.08 -1.80 16 21 C -0.13 -2.99 7.79 22.27 0.17 -2.81 16 22 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 23 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 24 C -0.12 -2.01 10.05 22.27 0.22 -1.78 16 25 C -0.12 -2.20 7.70 22.27 0.17 -2.03 16 26 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 2.18 3.72 -2.38 -0.01 2.17 16 29 H 0.06 2.47 6.79 -2.39 -0.02 2.46 16 30 H 0.05 2.05 7.98 -2.39 -0.02 2.03 16 31 H -0.03 -1.63 8.02 -2.38 -0.02 -1.65 16 32 H 0.04 1.96 3.99 -2.38 -0.01 1.95 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.02 0.85 4.41 -2.39 -0.01 0.84 16 35 H 0.07 2.23 6.64 -2.39 -0.02 2.22 16 36 H 0.07 2.91 4.60 -2.39 -0.01 2.90 16 37 H 0.04 1.38 6.35 -2.39 -0.02 1.36 16 38 H 0.07 2.05 5.86 -2.39 -0.01 2.03 16 39 H 0.04 1.49 6.02 -2.39 -0.01 1.48 16 40 H 0.08 1.61 7.15 -2.38 -0.02 1.59 16 41 H 0.07 1.46 5.60 -2.39 -0.01 1.45 16 42 H 0.06 1.36 6.03 -2.39 -0.01 1.34 16 43 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 44 H 0.06 1.64 6.49 -2.39 -0.02 1.63 16 45 H 0.11 2.64 8.04 -2.91 -0.02 2.61 16 46 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 47 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 48 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 49 H 0.14 2.06 8.01 -2.91 -0.02 2.04 16 Total: -1.00 -64.66 353.22 4.04 -60.62 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.93 Total: 21.84 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 4.62 Total: -52.31 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -3.53 Total: -77.27 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.66 4.04 -60.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498270.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.401 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds