Wall clock time and date at job start Tue Mar 31 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47380 * 2 1 4 4 N 1.46900 * 109.47181 * 120.00356 * 2 1 3 5 5 C 1.46901 * 110.99925 * 290.04244 * 4 2 1 6 6 H 1.09005 * 109.46989 * 29.40390 * 5 4 2 7 7 C 1.52996 * 109.47267 * 269.40142 * 5 4 2 8 8 C 1.53000 * 109.47321 * 149.39845 * 5 4 2 9 9 C 1.52997 * 109.47266 * 294.42646 * 8 5 4 10 10 C 1.50697 * 109.47252 * 184.95413 * 9 8 5 11 11 H 1.08004 * 119.99683 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00393 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99783 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00363 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46646 * 60.00233 * 14 12 10 16 16 H 1.48499 * 109.47426 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47035 * 300.00610 * 14 12 10 18 18 C 1.46890 * 111.00083 * 166.08859 * 4 2 1 19 19 H 1.09002 * 109.47473 * 68.83470 * 18 4 2 20 20 C 1.53007 * 109.47088 * 188.83261 * 18 4 2 21 21 C 1.50699 * 109.47131 * 308.83108 * 18 4 2 22 22 C 1.38227 * 120.00164 * 319.72644 * 21 18 4 23 23 C 1.38246 * 120.00207 * 179.78446 * 22 21 18 24 24 C 1.38234 * 119.99647 * 0.44590 * 23 22 21 25 25 C 1.38232 * 120.00173 * 359.81179 * 24 23 22 26 26 C 1.38241 * 120.00118 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47266 * 305.92066 * 1 2 3 28 28 H 1.09004 * 109.46892 * 65.91903 * 1 2 3 29 29 H 1.08994 * 109.47368 * 185.91393 * 1 2 3 30 30 H 1.08999 * 109.46909 * 240.00166 * 2 1 3 31 31 H 1.08998 * 109.47471 * 176.66680 * 3 2 1 32 32 H 1.08998 * 109.47126 * 296.67206 * 3 2 1 33 33 H 1.09007 * 109.47050 * 56.66883 * 3 2 1 34 34 H 1.09003 * 109.47327 * 298.63317 * 7 5 4 35 35 H 1.09008 * 109.47185 * 58.62931 * 7 5 4 36 36 H 1.08997 * 109.47226 * 178.63071 * 7 5 4 37 37 H 1.08998 * 109.46604 * 54.42362 * 8 5 4 38 38 H 1.08995 * 109.47372 * 174.42075 * 8 5 4 39 39 H 1.09004 * 109.47313 * 304.95369 * 9 8 5 40 40 H 1.09004 * 109.47613 * 64.95277 * 9 8 5 41 41 H 0.97001 * 120.00015 * 180.02562 * 13 12 10 42 42 H 1.09001 * 109.46745 * 47.13030 * 20 18 4 43 43 H 1.08994 * 109.46937 * 167.12664 * 20 18 4 44 44 H 1.08995 * 109.47093 * 287.12613 * 20 18 4 45 45 H 1.08000 * 120.00360 * 359.97438 * 22 21 18 46 46 H 1.07995 * 120.00248 * 180.27108 * 23 22 21 47 47 H 1.07998 * 120.00110 * 179.82659 * 24 23 22 48 48 H 1.08000 * 120.00050 * 180.02562 * 25 24 23 49 49 H 1.07993 * 120.00090 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.7520 0.0966 2.4091 6 1 0.8566 0.6998 2.2587 7 6 2.9431 1.0139 2.6936 8 6 1.5389 -0.8453 3.5958 9 6 0.2670 -1.6661 3.3734 10 6 -0.0096 -2.5048 4.5945 11 1 0.6557 -2.4575 5.4440 12 6 -1.1117 -3.3326 4.6272 13 7 -1.9214 -3.3905 3.5925 14 14 -1.4541 -4.3728 6.1405 15 1 -1.6352 -3.4875 7.3190 16 1 -2.6893 -5.1684 5.9253 17 1 -0.3102 -5.2887 6.3807 18 6 3.4501 -1.0044 1.0801 19 1 4.0275 -0.0804 1.1131 20 6 3.8727 -1.9114 2.2376 21 6 3.7034 -1.7084 -0.2280 22 6 2.8103 -2.6592 -0.6855 23 6 3.0404 -3.3019 -1.8877 24 6 4.1682 -3.0003 -2.6278 25 6 5.0641 -2.0534 -2.1678 26 6 4.8318 -1.4075 -0.9678 27 1 -0.3634 0.6029 0.8322 28 1 -0.3633 0.4193 -0.9383 29 1 -0.3634 -1.0221 0.1059 30 1 1.8933 -0.5138 -0.8900 31 1 3.1284 1.4431 0.0597 32 1 1.7263 1.9388 -0.9183 33 1 1.6288 1.9733 0.8587 34 1 3.8334 0.4098 2.8680 35 1 3.1100 1.6685 1.8381 36 1 2.7343 1.6169 3.5772 37 1 2.3932 -1.5162 3.6851 38 1 1.4388 -0.2608 4.5103 39 1 -0.5728 -0.9941 3.1965 40 1 0.4005 -2.3162 2.5087 41 1 -2.6970 -3.9726 3.6156 42 1 3.1523 -2.7224 2.3453 43 1 4.8593 -2.3267 2.0322 44 1 3.9074 -1.3313 3.1597 45 1 1.9313 -2.8978 -0.1052 46 1 2.3404 -4.0415 -2.2472 47 1 4.3494 -3.5044 -3.5656 48 1 5.9450 -1.8175 -2.7463 49 1 5.5319 -0.6681 -0.6082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172504637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:57 Heat of formation + Delta-G solvation = 30.889803 kcal Electronic energy + Delta-G solvation = -24778.311993 eV Core-core repulsion = 21705.473183 eV Total energy + Delta-G solvation = -3072.838811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27432 -38.27588 -34.02691 -33.41935 -32.30029 -30.74877 -29.77160 -28.82664 -28.16570 -26.86552 -24.97262 -23.25446 -22.45195 -21.51928 -20.80231 -20.26220 -18.39724 -16.69387 -16.12979 -15.88838 -15.67166 -14.67444 -14.42242 -14.28127 -14.12526 -13.68560 -13.29679 -13.18637 -12.95547 -12.74104 -12.61538 -12.49325 -12.02485 -11.88982 -11.76520 -11.65358 -11.38107 -11.19426 -11.08013 -10.96319 -10.84800 -10.82244 -10.76228 -10.48765 -10.39747 -10.15211 -9.92451 -9.29123 -9.03734 -8.84542 -8.75657 -8.47753 -8.18141 -7.69294 -5.85564 -3.86124 1.48806 1.56808 3.39871 3.44262 3.46774 3.92315 4.25124 4.56532 4.84644 5.02403 5.11164 5.16886 5.31158 5.34255 5.43912 5.45420 5.50119 5.55776 5.62818 5.65681 5.70000 5.78845 5.80483 5.91744 5.97010 6.04221 6.09808 6.11025 6.15473 6.23027 6.27002 6.28330 6.38518 6.51345 6.55310 6.60005 6.68121 6.71189 6.72917 6.84699 6.87102 7.04245 7.17259 7.42155 7.68156 7.70133 7.89109 8.13637 8.27285 8.62260 9.22933 9.76369 11.25272 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.004894 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.714075 B = 5719.562956 C = 6267.331232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 C -0.184 4.184 4 N -0.504 5.504 5 C 0.083 3.917 6 H 0.075 0.925 7 C -0.200 4.200 8 C -0.115 4.115 9 C 0.036 3.964 10 C -0.517 4.517 11 H 0.049 0.951 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.884 3.116 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.118 3.882 19 H 0.051 0.949 20 C -0.147 4.147 21 C -0.070 4.070 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.122 4.122 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.005 0.995 40 H 0.029 0.971 41 H 0.258 0.742 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.138 0.862 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.557 6.616 -11.364 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.242 4.242 4 N -0.227 5.227 5 C -0.025 4.025 6 H 0.093 0.907 7 C -0.258 4.258 8 C -0.152 4.152 9 C -0.001 4.001 10 C -0.556 4.556 11 H 0.067 0.933 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.712 3.288 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.204 1.204 18 C 0.010 3.990 19 H 0.069 0.931 20 C -0.204 4.204 21 C -0.071 4.071 22 C -0.107 4.107 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.145 4.145 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.156 0.844 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.125 6.078 -11.373 17.700 hybrid contribution 0.169 0.191 0.749 0.791 sum 12.294 6.269 -10.623 17.415 Atomic orbital electron populations 1.21810 0.94070 1.03435 1.00469 1.21795 0.96055 0.91779 0.94028 1.22707 1.00711 0.98998 1.01804 1.62416 1.13861 1.44731 1.01722 1.21841 0.96413 0.93354 0.90845 0.90701 1.22957 1.00559 1.00515 1.01779 1.22021 1.02100 0.97490 0.93616 1.18925 0.90394 0.94153 0.96647 1.21331 1.08901 1.23740 1.01602 0.93309 1.24965 0.96428 0.97092 0.95761 1.69961 1.14801 1.39154 1.29519 0.86798 0.77469 0.80607 0.83908 1.20493 1.21458 1.20426 1.20617 0.89892 0.96483 0.92023 0.93144 1.22183 1.00685 1.00574 0.96987 1.19909 0.94503 0.96902 0.95737 1.21285 0.99507 0.94431 0.95483 1.21224 0.97526 1.00082 0.95449 1.21084 0.95192 0.98533 0.99865 1.20998 0.99447 0.97557 0.96546 1.20973 0.97458 1.00484 0.95170 0.92656 0.93382 0.91004 0.90034 0.92957 0.93084 0.91904 0.91969 0.92231 0.92752 0.91736 0.93980 0.97644 0.95267 0.93279 0.90230 0.93343 0.91278 0.84422 0.86288 0.86725 0.86706 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.14 37.16 0.34 -1.81 16 2 C 0.07 1.03 2.42 -67.71 -0.16 0.87 16 3 C -0.18 -2.29 7.38 37.16 0.27 -2.02 16 4 N -0.50 -7.88 3.20 -212.22 -0.68 -8.56 16 5 C 0.08 1.38 1.56 -67.71 -0.11 1.27 16 6 H 0.07 1.31 5.47 -51.93 -0.28 1.03 16 7 C -0.20 -2.75 7.34 37.16 0.27 -2.47 16 8 C -0.11 -2.32 4.45 -26.73 -0.12 -2.44 16 9 C 0.04 0.92 4.81 -27.89 -0.13 0.78 16 10 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 11 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 14 Si 0.88 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.12 1.66 1.47 -68.87 -0.10 1.56 16 19 H 0.05 0.67 4.84 -51.93 -0.25 0.42 16 20 C -0.15 -2.19 7.37 37.16 0.27 -1.91 16 21 C -0.07 -0.96 3.50 -104.63 -0.37 -1.32 16 22 C -0.09 -1.28 7.87 -39.58 -0.31 -1.59 16 23 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 24 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 25 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.48 9.67 -39.58 -0.38 -1.86 16 27 H 0.05 0.89 6.64 -51.93 -0.35 0.55 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.19 5.45 -51.93 -0.28 0.90 16 31 H 0.05 0.63 5.96 -51.93 -0.31 0.32 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.81 5.78 -51.92 -0.30 0.51 16 34 H 0.06 0.83 4.76 -51.93 -0.25 0.58 16 35 H 0.06 0.74 4.37 -51.92 -0.23 0.52 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.28 4.12 -51.93 -0.21 1.06 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 1.40 7.69 -51.93 -0.40 1.00 16 43 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 44 H 0.07 1.02 4.61 -51.93 -0.24 0.78 16 45 H 0.14 2.27 7.73 -52.49 -0.41 1.86 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.11 1.02 8.06 -52.49 -0.42 0.59 16 49 H 0.11 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -29.60 359.54 -9.78 -39.38 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.10 Total: 3.19 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -2.13 Total: -30.07 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.06 Total: -34.89 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.60 -9.78 -39.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.270 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds