Wall clock time and date at job start Tue Mar 31 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47380 * 2 1 4 4 N 1.46900 * 109.47181 * 120.00356 * 2 1 3 5 5 C 1.46901 * 110.99925 * 290.04244 * 4 2 1 6 6 H 1.09005 * 109.46989 * 29.40390 * 5 4 2 7 7 C 1.52996 * 109.47267 * 269.40142 * 5 4 2 8 8 C 1.53000 * 109.47321 * 149.39845 * 5 4 2 9 9 C 1.52997 * 109.47266 * 294.42646 * 8 5 4 10 10 C 1.50697 * 109.47252 * 184.95413 * 9 8 5 11 11 H 1.08004 * 119.99683 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00393 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99783 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00363 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46646 * 60.00233 * 14 12 10 16 16 H 1.48499 * 109.47426 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47035 * 300.00610 * 14 12 10 18 18 C 1.46890 * 111.00083 * 166.08859 * 4 2 1 19 19 H 1.09002 * 109.47473 * 68.83470 * 18 4 2 20 20 C 1.53007 * 109.47088 * 188.83261 * 18 4 2 21 21 C 1.50699 * 109.47131 * 308.83108 * 18 4 2 22 22 C 1.38227 * 120.00164 * 319.72644 * 21 18 4 23 23 C 1.38246 * 120.00207 * 179.78446 * 22 21 18 24 24 C 1.38234 * 119.99647 * 0.44590 * 23 22 21 25 25 C 1.38232 * 120.00173 * 359.81179 * 24 23 22 26 26 C 1.38241 * 120.00118 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47266 * 305.92066 * 1 2 3 28 28 H 1.09004 * 109.46892 * 65.91903 * 1 2 3 29 29 H 1.08994 * 109.47368 * 185.91393 * 1 2 3 30 30 H 1.08999 * 109.46909 * 240.00166 * 2 1 3 31 31 H 1.08998 * 109.47471 * 176.66680 * 3 2 1 32 32 H 1.08998 * 109.47126 * 296.67206 * 3 2 1 33 33 H 1.09007 * 109.47050 * 56.66883 * 3 2 1 34 34 H 1.09003 * 109.47327 * 298.63317 * 7 5 4 35 35 H 1.09008 * 109.47185 * 58.62931 * 7 5 4 36 36 H 1.08997 * 109.47226 * 178.63071 * 7 5 4 37 37 H 1.08998 * 109.46604 * 54.42362 * 8 5 4 38 38 H 1.08995 * 109.47372 * 174.42075 * 8 5 4 39 39 H 1.09004 * 109.47313 * 304.95369 * 9 8 5 40 40 H 1.09004 * 109.47613 * 64.95277 * 9 8 5 41 41 H 0.97001 * 120.00015 * 180.02562 * 13 12 10 42 42 H 1.09001 * 109.46745 * 47.13030 * 20 18 4 43 43 H 1.08994 * 109.46937 * 167.12664 * 20 18 4 44 44 H 1.08995 * 109.47093 * 287.12613 * 20 18 4 45 45 H 1.08000 * 120.00360 * 359.97438 * 22 21 18 46 46 H 1.07995 * 120.00248 * 180.27108 * 23 22 21 47 47 H 1.07998 * 120.00110 * 179.82659 * 24 23 22 48 48 H 1.08000 * 120.00050 * 180.02562 * 25 24 23 49 49 H 1.07993 * 120.00090 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.7520 0.0966 2.4091 6 1 0.8566 0.6998 2.2587 7 6 2.9431 1.0139 2.6936 8 6 1.5389 -0.8453 3.5958 9 6 0.2670 -1.6661 3.3734 10 6 -0.0096 -2.5048 4.5945 11 1 0.6557 -2.4575 5.4440 12 6 -1.1117 -3.3326 4.6272 13 7 -1.9214 -3.3905 3.5925 14 14 -1.4541 -4.3728 6.1405 15 1 -1.6352 -3.4875 7.3190 16 1 -2.6893 -5.1684 5.9253 17 1 -0.3102 -5.2887 6.3807 18 6 3.4501 -1.0044 1.0801 19 1 4.0275 -0.0804 1.1131 20 6 3.8727 -1.9114 2.2376 21 6 3.7034 -1.7084 -0.2280 22 6 2.8103 -2.6592 -0.6855 23 6 3.0404 -3.3019 -1.8877 24 6 4.1682 -3.0003 -2.6278 25 6 5.0641 -2.0534 -2.1678 26 6 4.8318 -1.4075 -0.9678 27 1 -0.3634 0.6029 0.8322 28 1 -0.3633 0.4193 -0.9383 29 1 -0.3634 -1.0221 0.1059 30 1 1.8933 -0.5138 -0.8900 31 1 3.1284 1.4431 0.0597 32 1 1.7263 1.9388 -0.9183 33 1 1.6288 1.9733 0.8587 34 1 3.8334 0.4098 2.8680 35 1 3.1100 1.6685 1.8381 36 1 2.7343 1.6169 3.5772 37 1 2.3932 -1.5162 3.6851 38 1 1.4388 -0.2608 4.5103 39 1 -0.5728 -0.9941 3.1965 40 1 0.4005 -2.3162 2.5087 41 1 -2.6970 -3.9726 3.6156 42 1 3.1523 -2.7224 2.3453 43 1 4.8593 -2.3267 2.0322 44 1 3.9074 -1.3313 3.1597 45 1 1.9313 -2.8978 -0.1052 46 1 2.3404 -4.0415 -2.2472 47 1 4.3494 -3.5044 -3.5656 48 1 5.9450 -1.8175 -2.7463 49 1 5.5319 -0.6681 -0.6082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172504637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:57 Heat of formation + Delta-G solvation = 16.446336 kcal Electronic energy + Delta-G solvation = -24778.938309 eV Core-core repulsion = 21705.473183 eV Total energy + Delta-G solvation = -3073.465126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41994 -39.33542 -35.78454 -34.68896 -33.99967 -31.70735 -31.43211 -29.97056 -29.34415 -28.21373 -26.75738 -24.48760 -23.46531 -23.03069 -22.12813 -21.63763 -19.63362 -18.32351 -17.74559 -17.12333 -16.77118 -16.45072 -15.74615 -15.42791 -15.19294 -14.94152 -14.63923 -14.35102 -14.33505 -14.14631 -13.85232 -13.68983 -13.43668 -13.38654 -13.17749 -12.94482 -12.76475 -12.60724 -12.59200 -12.41301 -12.37145 -12.21068 -11.98737 -11.81861 -11.77911 -11.46142 -11.41296 -11.18490 -10.81332 -10.75531 -10.40689 -9.71416 -9.46488 -8.88743 -8.10863 -6.20592 0.53295 0.60362 1.39071 1.42013 1.49486 2.44517 2.92229 3.09881 3.21310 3.79286 3.96954 4.12142 4.15438 4.25378 4.25683 4.35756 4.38532 4.42206 4.50314 4.54171 4.58163 4.70984 4.76418 4.78818 4.79835 4.83753 4.89349 4.96574 5.00326 5.04644 5.07695 5.14870 5.19762 5.24266 5.27854 5.33459 5.39175 5.45764 5.53400 5.57819 5.65079 5.66177 5.73549 5.84063 5.99891 6.08389 6.21176 6.39456 6.48469 6.52237 6.99739 7.47130 8.99825 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.004894 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.714075 B = 5719.562956 C = 6267.331232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.077 3.923 3 C -0.176 4.176 4 N -0.526 5.526 5 C 0.091 3.909 6 H 0.060 0.940 7 C -0.190 4.190 8 C -0.105 4.105 9 C 0.051 3.949 10 C -0.540 4.540 11 H 0.052 0.948 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.955 3.045 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.122 3.878 19 H 0.070 0.930 20 C -0.142 4.142 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.122 4.122 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.039 0.961 39 H -0.028 1.028 40 H -0.001 1.001 41 H 0.259 0.741 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.263 7.634 -11.986 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 C -0.234 4.234 4 N -0.250 5.250 5 C -0.017 4.017 6 H 0.079 0.921 7 C -0.248 4.248 8 C -0.143 4.143 9 C 0.014 3.986 10 C -0.579 4.579 11 H 0.071 0.929 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.780 3.220 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.194 1.194 18 C 0.015 3.985 19 H 0.088 0.912 20 C -0.199 4.199 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.140 4.140 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.058 0.942 39 H -0.009 1.009 40 H 0.018 0.982 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.141 0.859 47 H 0.159 0.841 48 H 0.164 0.836 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.842 7.103 -11.992 20.361 hybrid contribution -0.702 -0.186 0.873 1.136 sum 14.140 6.917 -11.118 19.272 Atomic orbital electron populations 1.21761 0.95550 1.00900 1.01070 1.21721 0.94780 0.93300 0.93344 1.22607 1.01299 0.97023 1.02468 1.62256 1.15484 1.45409 1.01838 1.21583 0.97543 0.92742 0.89842 0.92142 1.22848 0.99027 1.00106 1.02860 1.21878 0.99308 0.97643 0.95473 1.18684 0.91872 0.93373 0.94642 1.21799 1.09214 1.24337 1.02514 0.92935 1.25879 0.96181 0.98429 0.99049 1.70116 1.15303 1.39993 1.31758 0.85662 0.77531 0.78878 0.79926 1.19341 1.20983 1.19416 1.20615 0.88878 0.96961 0.92069 0.91202 1.22101 1.00525 0.99646 0.97643 1.19877 0.95279 0.97010 0.95846 1.21069 0.99163 0.96260 0.96389 1.21356 0.98621 1.00275 0.95138 1.21397 0.94239 0.98415 1.00444 1.21391 1.00023 0.96433 0.96196 1.21226 0.96830 1.00785 0.95201 0.93963 0.91109 0.94709 0.90020 0.91708 0.91592 0.92249 0.91168 0.90262 0.92257 0.91207 0.94222 1.00924 0.98245 0.93196 0.93995 0.91554 0.91206 0.88146 0.85901 0.84148 0.83589 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.14 71.98 0.66 -3.74 16 2 C 0.08 2.21 2.42 44.92 0.11 2.32 16 3 C -0.18 -4.02 7.38 71.98 0.53 -3.49 16 4 N -0.53 -16.96 3.20 -825.33 -2.64 -19.60 16 5 C 0.09 3.06 1.56 44.91 0.07 3.13 16 6 H 0.06 2.20 5.47 -2.38 -0.01 2.19 16 7 C -0.19 -4.86 7.34 71.98 0.53 -4.34 16 8 C -0.11 -4.43 4.45 30.59 0.14 -4.29 16 9 C 0.05 2.80 4.81 29.85 0.14 2.94 16 10 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 12 C 0.00 0.12 5.46 84.65 0.46 0.58 16 13 N -0.93 -58.71 13.29 21.45 0.28 -58.43 16 14 Si 0.95 45.92 29.54 68.60 2.03 47.94 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 18 C 0.12 3.36 1.47 44.17 0.06 3.43 16 19 H 0.07 1.66 4.84 -2.39 -0.01 1.65 16 20 C -0.14 -4.22 7.37 71.98 0.53 -3.69 16 21 C -0.08 -2.11 3.50 -19.87 -0.07 -2.18 16 22 C -0.11 -3.32 7.87 22.27 0.18 -3.14 16 23 C -0.14 -3.45 10.05 22.27 0.22 -3.23 16 24 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 25 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 26 C -0.12 -2.57 9.67 22.27 0.22 -2.36 16 27 H 0.04 1.45 6.64 -2.39 -0.02 1.43 16 28 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 2.38 5.45 -2.39 -0.01 2.37 16 31 H 0.06 1.33 5.96 -2.39 -0.01 1.32 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.41 5.78 -2.38 -0.01 1.40 16 34 H 0.07 1.69 4.76 -2.39 -0.01 1.68 16 35 H 0.08 1.74 4.37 -2.38 -0.01 1.73 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 2.85 4.12 -2.39 -0.01 2.84 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 40 H 0.00 -0.05 7.91 -2.39 -0.02 -0.07 16 41 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.04 1.55 7.69 -2.39 -0.02 1.53 16 43 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 44 H 0.07 2.02 4.61 -2.39 -0.01 2.01 16 45 H 0.10 3.71 7.73 -2.91 -0.02 3.69 16 46 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 47 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.14 2.26 8.04 -2.91 -0.02 2.23 16 Total: -1.00 -67.39 359.54 5.04 -62.35 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.91 Total: 21.91 kcal Atomic # 6 Polarization: -58.64 SS G_CDS: 4.46 Total: -54.18 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.36 Total: -78.03 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.39 5.04 -62.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.797 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds