Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46608 * 2 1 4 4 N 1.46892 * 109.47260 * 119.99803 * 2 1 3 5 5 C 1.46903 * 111.00161 * 304.31298 * 4 2 1 6 6 H 1.08999 * 109.47107 * 328.55378 * 5 4 2 7 7 C 1.52999 * 109.46958 * 88.55852 * 5 4 2 8 8 C 1.53005 * 109.46799 * 208.55451 * 5 4 2 9 9 C 1.52998 * 109.47090 * 65.02910 * 8 5 4 10 10 C 1.50698 * 109.47386 * 184.65578 * 9 8 5 11 11 H 1.08003 * 119.99999 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00241 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00031 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47167 * 60.00067 * 14 12 10 16 16 H 1.48498 * 109.47178 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46715 * 300.00012 * 14 12 10 18 18 C 1.46897 * 110.99957 * 68.26552 * 4 2 1 19 19 H 1.08999 * 109.47482 * 284.60930 * 18 4 2 20 20 C 1.53001 * 109.47117 * 44.60556 * 18 4 2 21 21 C 1.50700 * 109.47512 * 164.60592 * 18 4 2 22 22 C 1.38237 * 120.00099 * 310.89359 * 21 18 4 23 23 C 1.38233 * 120.00069 * 179.78759 * 22 21 18 24 24 C 1.38235 * 119.99855 * 0.43500 * 23 22 21 25 25 C 1.38232 * 120.00296 * 359.81190 * 24 23 22 26 26 C 1.38231 * 119.99811 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47004 * 306.80712 * 1 2 3 28 28 H 1.08994 * 109.47216 * 66.80926 * 1 2 3 29 29 H 1.08998 * 109.46982 * 186.81317 * 1 2 3 30 30 H 1.08994 * 109.47026 * 240.00388 * 2 1 3 31 31 H 1.09000 * 109.46448 * 182.31682 * 3 2 1 32 32 H 1.08996 * 109.47170 * 302.31695 * 3 2 1 33 33 H 1.08992 * 109.47343 * 62.31949 * 3 2 1 34 34 H 1.08995 * 109.47144 * 308.01495 * 7 5 4 35 35 H 1.09004 * 109.47272 * 68.01961 * 7 5 4 36 36 H 1.09006 * 109.46854 * 188.01692 * 7 5 4 37 37 H 1.09001 * 109.46631 * 185.02003 * 8 5 4 38 38 H 1.08991 * 109.47510 * 305.02465 * 8 5 4 39 39 H 1.09002 * 109.47235 * 304.65799 * 9 8 5 40 40 H 1.09000 * 109.47573 * 64.65361 * 9 8 5 41 41 H 0.96998 * 120.00286 * 179.97438 * 13 12 10 42 42 H 1.08992 * 109.47184 * 292.79979 * 20 18 4 43 43 H 1.09000 * 109.46972 * 52.80039 * 20 18 4 44 44 H 1.09000 * 109.47450 * 172.79608 * 20 18 4 45 45 H 1.08006 * 119.99761 * 359.97438 * 22 21 18 46 46 H 1.08001 * 119.99853 * 180.27277 * 23 22 21 47 47 H 1.08003 * 119.99997 * 179.83805 * 24 23 22 48 48 H 1.07994 * 119.99983 * 179.97438 * 25 24 23 49 49 H 1.08002 * 120.00464 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4664 -0.0884 2.4188 6 1 1.3071 0.9776 2.2563 7 6 0.1331 -0.7572 2.7594 8 6 2.4469 -0.2870 3.5764 9 6 3.7359 0.4865 3.2914 10 6 4.7437 0.1999 4.3744 11 1 4.4902 -0.4669 5.1853 12 6 5.9896 0.7889 4.3302 13 7 6.2986 1.6004 3.3426 14 14 7.2391 0.4330 5.6724 15 1 7.5314 -1.0227 5.7033 16 1 8.4901 1.1838 5.3958 17 1 6.6889 0.8554 6.9854 18 6 1.7164 -2.1285 1.1389 19 1 0.6574 -2.2851 1.3439 20 6 2.0501 -2.6619 -0.2557 21 6 2.5407 -2.8598 2.1669 22 6 3.9012 -2.6307 2.2523 23 6 4.6566 -3.2982 3.1982 24 6 4.0528 -4.2016 4.0527 25 6 2.6932 -4.4346 3.9640 26 6 1.9371 -3.7638 3.0211 27 1 -0.3633 0.6157 0.8228 28 1 -0.3633 0.4047 -0.9446 29 1 -0.3633 -1.0204 0.1219 30 1 1.8933 -0.5137 -0.8900 31 1 3.1292 1.4429 -0.0415 32 1 1.6431 1.9682 -0.8684 33 1 1.7110 1.9443 0.9100 34 1 -0.5158 -0.7407 1.8838 35 1 0.3109 -1.7896 3.0605 36 1 -0.3457 -0.2177 3.5767 37 1 1.9988 0.0814 4.4993 38 1 2.6752 -1.3475 3.6814 39 1 4.1400 0.1765 2.3277 40 1 3.5211 1.5549 3.2685 41 1 7.1749 2.0151 3.3117 42 1 1.3664 -2.2266 -0.9844 43 1 3.0746 -2.3921 -0.5124 44 1 1.9473 -3.7470 -0.2639 45 1 4.3736 -1.9278 1.5819 46 1 5.7188 -3.1159 3.2678 47 1 4.6434 -4.7252 4.7900 48 1 2.2217 -5.1407 4.6314 49 1 0.8749 -3.9460 2.9514 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172504638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = 32.392299 kcal Electronic energy + Delta-G solvation = -25427.909884 eV Core-core repulsion = 22355.136227 eV Total energy + Delta-G solvation = -3072.773658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20192 -37.94527 -33.98565 -33.21200 -32.26703 -30.39213 -29.57308 -29.00495 -28.06482 -26.66869 -24.85521 -23.35452 -21.96593 -21.63557 -20.63375 -20.16422 -17.96336 -16.36294 -16.06882 -15.91866 -15.52625 -14.95464 -14.33360 -14.13230 -13.85512 -13.64095 -13.10169 -12.80956 -12.72686 -12.64476 -12.55543 -12.26260 -12.17334 -11.96727 -11.73598 -11.56811 -11.38966 -11.18539 -11.03922 -10.91162 -10.82877 -10.79825 -10.47040 -10.35833 -10.32964 -9.99131 -9.82379 -9.43771 -9.05331 -8.79636 -8.26995 -8.15635 -7.94786 -7.65682 -5.81677 -3.80336 1.92055 2.04500 3.40490 3.45218 3.48053 4.19440 4.46694 4.59265 5.03931 5.13882 5.27515 5.36056 5.44813 5.48624 5.50036 5.54114 5.56112 5.59427 5.67435 5.73063 5.76949 5.82948 5.89384 5.99134 6.03182 6.06210 6.11599 6.15219 6.21463 6.28337 6.37958 6.45974 6.54639 6.56042 6.59940 6.66299 6.72095 6.85857 6.99996 7.09098 7.20037 7.26313 7.48510 7.61118 7.72268 7.73356 7.94792 8.19360 8.32883 8.68705 9.27932 9.81010 11.29335 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.007180 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.547231 B = 3898.963120 C = 5113.588813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.072 3.928 3 C -0.143 4.143 4 N -0.504 5.504 5 C 0.082 3.918 6 H 0.074 0.926 7 C -0.199 4.199 8 C -0.111 4.111 9 C 0.036 3.964 10 C -0.503 4.503 11 H 0.047 0.953 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.879 3.121 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.116 3.884 19 H 0.054 0.946 20 C -0.147 4.147 21 C -0.068 4.068 22 C -0.058 4.058 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.129 4.129 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.000 1.000 41 H 0.256 0.744 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.129 0.871 46 H 0.118 0.882 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.172 -8.581 -6.846 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.037 4.037 3 C -0.201 4.201 4 N -0.228 5.228 5 C -0.026 4.026 6 H 0.092 0.908 7 C -0.257 4.257 8 C -0.149 4.149 9 C -0.001 4.001 10 C -0.541 4.541 11 H 0.065 0.935 12 C -0.142 4.142 13 N -0.537 5.537 14 Si 0.707 3.293 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.008 3.992 19 H 0.072 0.928 20 C -0.205 4.205 21 C -0.069 4.069 22 C -0.076 4.076 23 C -0.123 4.123 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.147 4.147 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.018 0.982 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.147 0.853 46 H 0.136 0.864 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.505 -8.407 -6.907 15.124 hybrid contribution -0.124 -0.090 1.047 1.059 sum -10.629 -8.497 -5.859 14.816 Atomic orbital electron populations 1.22761 0.98629 1.01400 1.01758 1.21807 0.91807 0.95838 0.94206 1.21864 1.02665 0.94575 1.00981 1.62364 1.58390 1.00587 1.01412 1.21858 0.92107 0.97869 0.90779 0.90798 1.22924 0.99199 1.01944 1.01620 1.21910 0.97012 1.02468 0.93494 1.18939 0.90085 0.93727 0.97319 1.21246 0.98073 1.26193 1.08631 0.93508 1.24928 0.98166 0.95642 0.95483 1.69955 1.21207 1.31154 1.31342 0.86878 0.81189 0.78250 0.82947 1.20436 1.21573 1.20630 1.20584 0.96644 0.88304 0.93686 0.92849 1.21995 1.02594 1.00396 0.95486 1.19579 0.94385 0.96350 0.96557 1.20974 0.92933 0.96090 0.97615 1.21145 1.00326 0.95576 0.95258 1.21031 0.94824 0.99238 0.99365 1.20869 0.94238 1.00783 0.99091 1.20803 0.98772 0.98328 0.96807 0.91896 0.93036 0.92730 0.89865 0.91228 0.93247 0.92332 0.92003 0.92189 0.93054 0.94688 0.91381 0.94784 0.98176 0.93418 0.92572 0.91389 0.92542 0.85283 0.86411 0.87130 0.87218 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 7.20 37.16 0.27 -1.90 16 2 C 0.07 0.98 2.41 -67.71 -0.16 0.81 16 3 C -0.14 -2.10 9.19 37.16 0.34 -1.75 16 4 N -0.50 -7.93 3.27 -212.22 -0.69 -8.63 16 5 C 0.08 1.40 1.61 -67.71 -0.11 1.29 16 6 H 0.07 1.32 5.42 -51.93 -0.28 1.04 16 7 C -0.20 -2.88 7.30 37.16 0.27 -2.61 16 8 C -0.11 -2.35 4.16 -26.73 -0.11 -2.46 16 9 C 0.04 0.93 4.54 -27.88 -0.13 0.80 16 10 C -0.50 -14.18 9.11 -34.44 -0.31 -14.49 16 11 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 14 Si 0.88 22.03 29.54 -169.99 -5.02 17.01 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 C 0.12 1.65 1.30 -68.87 -0.09 1.56 16 19 H 0.05 0.73 4.46 -51.93 -0.23 0.49 16 20 C -0.15 -1.81 7.96 37.16 0.30 -1.52 16 21 C -0.07 -1.09 2.45 -104.62 -0.26 -1.35 16 22 C -0.06 -1.05 6.97 -39.58 -0.28 -1.33 16 23 C -0.10 -1.91 10.05 -39.58 -0.40 -2.31 16 24 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 25 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 16 26 C -0.13 -1.92 8.39 -39.58 -0.33 -2.25 16 27 H 0.06 0.77 6.05 -51.93 -0.31 0.46 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.61 5.83 -51.93 -0.30 0.31 16 30 H 0.08 1.07 5.82 -51.93 -0.30 0.76 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.92 6.08 -51.93 -0.32 0.61 16 34 H 0.06 0.79 3.99 -51.93 -0.21 0.58 16 35 H 0.06 0.88 5.18 -51.93 -0.27 0.61 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.45 4.19 -51.93 -0.22 1.23 16 39 H 0.03 0.91 6.88 -51.93 -0.36 0.56 16 40 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.06 0.61 6.44 -51.93 -0.33 0.27 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.13 2.58 7.46 -52.48 -0.39 2.19 16 46 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 47 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 48 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.11 1.39 7.69 -52.49 -0.40 0.99 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -29.57 356.44 -9.62 -39.19 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.12 Total: 4.01 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: -1.89 Total: -30.76 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.04 Total: -34.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.57 -9.62 -39.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.587 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds