Wall clock time and date at job start Tue Mar 31 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46608 * 2 1 4 4 N 1.46892 * 109.47260 * 119.99803 * 2 1 3 5 5 C 1.46903 * 111.00161 * 304.31298 * 4 2 1 6 6 H 1.08999 * 109.47107 * 328.55378 * 5 4 2 7 7 C 1.52999 * 109.46958 * 88.55852 * 5 4 2 8 8 C 1.53005 * 109.46799 * 208.55451 * 5 4 2 9 9 C 1.52998 * 109.47090 * 65.02910 * 8 5 4 10 10 C 1.50698 * 109.47386 * 184.65578 * 9 8 5 11 11 H 1.08003 * 119.99999 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00241 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00031 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47167 * 60.00067 * 14 12 10 16 16 H 1.48498 * 109.47178 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46715 * 300.00012 * 14 12 10 18 18 C 1.46897 * 110.99957 * 68.26552 * 4 2 1 19 19 H 1.08999 * 109.47482 * 284.60930 * 18 4 2 20 20 C 1.53001 * 109.47117 * 44.60556 * 18 4 2 21 21 C 1.50700 * 109.47512 * 164.60592 * 18 4 2 22 22 C 1.38237 * 120.00099 * 310.89359 * 21 18 4 23 23 C 1.38233 * 120.00069 * 179.78759 * 22 21 18 24 24 C 1.38235 * 119.99855 * 0.43500 * 23 22 21 25 25 C 1.38232 * 120.00296 * 359.81190 * 24 23 22 26 26 C 1.38231 * 119.99811 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47004 * 306.80712 * 1 2 3 28 28 H 1.08994 * 109.47216 * 66.80926 * 1 2 3 29 29 H 1.08998 * 109.46982 * 186.81317 * 1 2 3 30 30 H 1.08994 * 109.47026 * 240.00388 * 2 1 3 31 31 H 1.09000 * 109.46448 * 182.31682 * 3 2 1 32 32 H 1.08996 * 109.47170 * 302.31695 * 3 2 1 33 33 H 1.08992 * 109.47343 * 62.31949 * 3 2 1 34 34 H 1.08995 * 109.47144 * 308.01495 * 7 5 4 35 35 H 1.09004 * 109.47272 * 68.01961 * 7 5 4 36 36 H 1.09006 * 109.46854 * 188.01692 * 7 5 4 37 37 H 1.09001 * 109.46631 * 185.02003 * 8 5 4 38 38 H 1.08991 * 109.47510 * 305.02465 * 8 5 4 39 39 H 1.09002 * 109.47235 * 304.65799 * 9 8 5 40 40 H 1.09000 * 109.47573 * 64.65361 * 9 8 5 41 41 H 0.96998 * 120.00286 * 179.97438 * 13 12 10 42 42 H 1.08992 * 109.47184 * 292.79979 * 20 18 4 43 43 H 1.09000 * 109.46972 * 52.80039 * 20 18 4 44 44 H 1.09000 * 109.47450 * 172.79608 * 20 18 4 45 45 H 1.08006 * 119.99761 * 359.97438 * 22 21 18 46 46 H 1.08001 * 119.99853 * 180.27277 * 23 22 21 47 47 H 1.08003 * 119.99997 * 179.83805 * 24 23 22 48 48 H 1.07994 * 119.99983 * 179.97438 * 25 24 23 49 49 H 1.08002 * 120.00464 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4664 -0.0884 2.4188 6 1 1.3071 0.9776 2.2563 7 6 0.1331 -0.7572 2.7594 8 6 2.4469 -0.2870 3.5764 9 6 3.7359 0.4865 3.2914 10 6 4.7437 0.1999 4.3744 11 1 4.4902 -0.4669 5.1853 12 6 5.9896 0.7889 4.3302 13 7 6.2986 1.6004 3.3426 14 14 7.2391 0.4330 5.6724 15 1 7.5314 -1.0227 5.7033 16 1 8.4901 1.1838 5.3958 17 1 6.6889 0.8554 6.9854 18 6 1.7164 -2.1285 1.1389 19 1 0.6574 -2.2851 1.3439 20 6 2.0501 -2.6619 -0.2557 21 6 2.5407 -2.8598 2.1669 22 6 3.9012 -2.6307 2.2523 23 6 4.6566 -3.2982 3.1982 24 6 4.0528 -4.2016 4.0527 25 6 2.6932 -4.4346 3.9640 26 6 1.9371 -3.7638 3.0211 27 1 -0.3633 0.6157 0.8228 28 1 -0.3633 0.4047 -0.9446 29 1 -0.3633 -1.0204 0.1219 30 1 1.8933 -0.5137 -0.8900 31 1 3.1292 1.4429 -0.0415 32 1 1.6431 1.9682 -0.8684 33 1 1.7110 1.9443 0.9100 34 1 -0.5158 -0.7407 1.8838 35 1 0.3109 -1.7896 3.0605 36 1 -0.3457 -0.2177 3.5767 37 1 1.9988 0.0814 4.4993 38 1 2.6752 -1.3475 3.6814 39 1 4.1400 0.1765 2.3277 40 1 3.5211 1.5549 3.2685 41 1 7.1749 2.0151 3.3117 42 1 1.3664 -2.2266 -0.9844 43 1 3.0746 -2.3921 -0.5124 44 1 1.9473 -3.7470 -0.2639 45 1 4.3736 -1.9278 1.5819 46 1 5.7188 -3.1159 3.2678 47 1 4.6434 -4.7252 4.7900 48 1 2.2217 -5.1407 4.6314 49 1 0.8749 -3.9460 2.9514 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172504638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:00 Heat of formation + Delta-G solvation = 17.743342 kcal Electronic energy + Delta-G solvation = -25428.545111 eV Core-core repulsion = 22355.136227 eV Total energy + Delta-G solvation = -3073.408884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43359 -39.18075 -35.81287 -34.36220 -34.09539 -31.73635 -31.15040 -30.33340 -29.16996 -27.88842 -26.71355 -24.55196 -23.32287 -23.20160 -22.05026 -21.58833 -19.23053 -18.26653 -17.59916 -17.19806 -16.78013 -16.43444 -16.15427 -15.34565 -15.04010 -14.93054 -14.47573 -14.35442 -14.15227 -13.97115 -13.79357 -13.58192 -13.55771 -13.34457 -13.18923 -12.87571 -12.77071 -12.56486 -12.53135 -12.43050 -12.32300 -12.20773 -11.95793 -11.70657 -11.63038 -11.53086 -11.22456 -11.11023 -10.97209 -10.73445 -10.40186 -9.56356 -9.25194 -8.84464 -8.07128 -6.13481 0.65417 0.76122 1.37403 1.39187 1.46628 2.45322 2.97572 3.22893 3.25723 3.91670 4.00299 4.13740 4.23864 4.29156 4.31006 4.36030 4.43130 4.47605 4.50506 4.56717 4.62582 4.76940 4.80242 4.83395 4.86358 4.87888 4.92771 5.00761 5.04332 5.10312 5.11154 5.21549 5.24418 5.31689 5.34213 5.40080 5.43979 5.47225 5.49491 5.60782 5.68694 5.74781 5.86824 5.96069 6.03508 6.15449 6.33046 6.45968 6.51421 6.57096 7.04318 7.52188 9.03570 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.007180 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.547231 B = 3898.963120 C = 5113.588813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 C -0.140 4.140 4 N -0.528 5.528 5 C 0.089 3.911 6 H 0.061 0.939 7 C -0.190 4.190 8 C -0.101 4.101 9 C 0.055 3.945 10 C -0.515 4.515 11 H 0.043 0.957 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.117 3.883 19 H 0.073 0.927 20 C -0.142 4.142 21 C -0.070 4.070 22 C -0.076 4.076 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.013 0.987 40 H -0.037 1.037 41 H 0.257 0.743 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.127 0.873 48 H 0.143 0.857 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 -10.476 -6.714 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.036 4.036 3 C -0.197 4.197 4 N -0.252 5.252 5 C -0.019 4.019 6 H 0.079 0.921 7 C -0.248 4.248 8 C -0.139 4.139 9 C 0.018 3.982 10 C -0.554 4.554 11 H 0.061 0.939 12 C -0.191 4.191 13 N -0.572 5.572 14 Si 0.769 3.231 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.010 3.990 19 H 0.091 0.909 20 C -0.199 4.199 21 C -0.071 4.071 22 C -0.094 4.094 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.145 4.145 26 C -0.145 4.145 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.031 0.969 40 H -0.019 1.019 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.145 0.855 48 H 0.161 0.839 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.072 -10.310 -6.775 17.974 hybrid contribution 0.713 0.518 0.981 1.319 sum -12.359 -9.792 -5.795 16.799 Atomic orbital electron populations 1.22654 0.96213 1.02196 1.02674 1.21836 0.93677 0.94543 0.93496 1.21832 1.00441 0.96129 1.01318 1.62196 1.59604 1.01763 1.01604 1.21585 0.92476 0.97844 0.89976 0.92060 1.22828 0.97517 1.01588 1.02832 1.21746 0.95759 1.01409 0.95006 1.18670 0.92004 0.91843 0.95672 1.21557 0.98965 1.25862 1.08976 0.93918 1.25723 1.00223 0.95425 0.97738 1.70093 1.21719 1.32160 1.33184 0.85847 0.78657 0.78524 0.80123 1.19405 1.21095 1.19843 1.20676 0.97135 0.87006 0.94230 0.90907 1.21959 1.01966 1.01269 0.94748 1.19803 0.93419 0.96629 0.97207 1.20751 0.94344 0.96464 0.97856 1.21163 0.99762 0.97357 0.96779 1.21249 0.96003 0.98809 0.99205 1.21269 0.93524 1.00634 0.99092 1.21174 1.00297 0.97224 0.95816 0.92495 0.91070 0.91458 0.88799 0.94708 0.90571 0.94036 0.89532 0.91862 0.92806 0.95763 0.91245 0.96881 1.01856 0.93403 0.90474 0.93309 0.91266 0.88622 0.88330 0.85499 0.83946 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 7.20 71.98 0.52 -3.03 16 2 C 0.07 1.88 2.41 44.92 0.11 1.99 16 3 C -0.14 -4.17 9.19 71.98 0.66 -3.51 16 4 N -0.53 -16.47 3.27 -825.32 -2.70 -19.18 16 5 C 0.09 3.03 1.61 44.92 0.07 3.11 16 6 H 0.06 2.23 5.42 -2.39 -0.01 2.22 16 7 C -0.19 -4.97 7.30 71.98 0.53 -4.45 16 8 C -0.10 -4.40 4.16 30.60 0.13 -4.27 16 9 C 0.06 2.98 4.54 29.85 0.14 3.12 16 10 C -0.52 -30.20 9.11 25.60 0.23 -29.97 16 11 H 0.04 2.49 7.74 -2.91 -0.02 2.46 16 12 C 0.01 0.35 5.46 84.66 0.46 0.81 16 13 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 14 Si 0.94 46.20 29.54 68.60 2.03 48.23 16 15 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 18 C 0.12 3.10 1.30 44.17 0.06 3.16 16 19 H 0.07 1.67 4.46 -2.39 -0.01 1.66 16 20 C -0.14 -3.21 7.96 71.98 0.57 -2.64 16 21 C -0.07 -2.17 2.45 -19.86 -0.05 -2.22 16 22 C -0.08 -2.87 6.97 22.27 0.16 -2.71 16 23 C -0.13 -5.01 10.05 22.27 0.22 -4.78 16 24 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 25 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 26 C -0.13 -3.41 8.39 22.27 0.19 -3.23 16 27 H 0.06 1.22 6.05 -2.39 -0.01 1.21 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.19 5.83 -2.39 -0.01 1.18 16 30 H 0.09 2.25 5.82 -2.39 -0.01 2.23 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.36 6.08 -2.39 -0.01 1.34 16 34 H 0.09 1.86 3.99 -2.39 -0.01 1.85 16 35 H 0.06 1.62 5.18 -2.39 -0.01 1.61 16 36 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 2.99 4.19 -2.39 -0.01 2.98 16 39 H 0.01 0.75 6.88 -2.39 -0.02 0.73 16 40 H -0.04 -2.24 8.14 -2.39 -0.02 -2.26 16 41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.08 1.41 6.44 -2.39 -0.02 1.40 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 45 H 0.10 4.19 7.46 -2.91 -0.02 4.17 16 46 H 0.10 3.94 8.06 -2.91 -0.02 3.91 16 47 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 48 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 49 H 0.14 2.89 7.69 -2.91 -0.02 2.87 16 Total: -1.00 -67.32 356.44 4.96 -62.36 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.91 Total: 22.41 kcal Atomic # 6 Polarization: -60.32 SS G_CDS: 4.44 Total: -55.88 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.42 Total: -77.11 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -67.32 4.96 -62.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.105 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds