Wall clock time and date at job start Tue Mar 31 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47502 * 2 1 4 4 C 1.46899 * 110.99881 * 294.38701 * 3 2 1 5 5 C 1.50698 * 109.47331 * 291.83617 * 4 3 2 6 6 C 1.38252 * 120.00049 * 276.51767 * 5 4 3 7 7 C 1.38215 * 120.00206 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99516 * 359.74867 * 7 6 5 9 9 C 1.50704 * 119.99746 * 180.27426 * 8 7 6 10 10 C 1.38209 * 120.00526 * 0.50236 * 8 7 6 11 11 C 1.50697 * 120.00387 * 179.76474 * 10 8 7 12 12 C 1.38220 * 119.99972 * 96.48810 * 5 4 3 13 13 C 1.46899 * 110.99752 * 58.33705 * 3 2 1 14 14 H 1.08993 * 109.47508 * 293.74238 * 13 3 2 15 15 C 1.53008 * 109.47067 * 173.74397 * 13 3 2 16 16 C 1.52997 * 109.47192 * 53.74805 * 13 3 2 17 17 C 1.53000 * 109.47200 * 184.07441 * 16 13 3 18 18 C 1.50701 * 109.46994 * 181.91532 * 17 16 13 19 19 H 1.08000 * 120.00230 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99895 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47009 * 60.00178 * 22 20 18 24 24 H 1.48495 * 109.47344 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47254 * 300.00449 * 22 20 18 26 26 H 1.08999 * 109.47516 * 182.10189 * 1 2 3 27 27 H 1.09002 * 109.46802 * 302.10059 * 1 2 3 28 28 H 1.09001 * 109.47170 * 62.10162 * 1 2 3 29 29 H 1.08999 * 109.47271 * 239.99736 * 2 1 3 30 30 H 1.09007 * 109.47131 * 119.99895 * 2 1 3 31 31 H 1.09004 * 109.47141 * 171.83779 * 4 3 2 32 32 H 1.09010 * 109.47210 * 51.83719 * 4 3 2 33 33 H 1.08002 * 120.00485 * 359.97438 * 6 5 4 34 34 H 1.07995 * 120.00489 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47274 * 270.22833 * 9 8 7 36 36 H 1.09004 * 109.47502 * 30.23078 * 9 8 7 37 37 H 1.09002 * 109.47092 * 150.23420 * 9 8 7 38 38 H 1.08996 * 109.47167 * 269.72661 * 11 10 8 39 39 H 1.09000 * 109.47210 * 149.73026 * 11 10 8 40 40 H 1.08996 * 109.47402 * 29.73343 * 11 10 8 41 41 H 1.07998 * 119.99772 * 0.02562 * 12 5 4 42 42 H 1.09000 * 109.46962 * 300.00557 * 15 13 3 43 43 H 1.09000 * 109.46898 * 59.99999 * 15 13 3 44 44 H 1.08997 * 109.46936 * 180.02562 * 15 13 3 45 45 H 1.09000 * 109.46975 * 304.07643 * 16 13 3 46 46 H 1.09005 * 109.47443 * 64.07717 * 16 13 3 47 47 H 1.08997 * 109.47391 * 301.91720 * 17 16 13 48 48 H 1.09000 * 109.46801 * 61.91800 * 17 16 13 49 49 H 0.97004 * 119.99917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6614 2.0700 -1.2491 5 6 2.4331 1.4648 -2.3933 6 6 3.7244 1.8837 -2.6543 7 6 4.4324 1.3282 -3.7034 8 6 3.8509 0.3499 -4.4885 9 6 4.6251 -0.2602 -5.6285 10 6 2.5581 -0.0652 -4.2308 11 6 1.9225 -1.1277 -5.0898 12 6 1.8499 0.4904 -3.1813 13 6 1.5165 2.1212 1.1673 14 1 0.4351 2.2321 1.0885 15 6 2.1686 3.5045 1.2177 16 6 1.8585 1.3495 2.4433 17 6 1.2470 2.0634 3.6505 18 6 1.6232 1.3294 4.9118 19 1 2.2374 0.4427 4.8578 20 6 1.1841 1.7905 6.1348 21 7 0.4366 2.8705 6.2005 22 14 1.6510 0.8811 7.6982 23 1 3.1296 0.8567 7.8338 24 1 1.0574 1.5739 8.8699 25 1 1.1368 -0.5106 7.6338 26 1 -0.3634 -1.0269 0.0377 27 1 -0.3633 0.5461 0.8706 28 1 -0.3633 0.4809 -0.9082 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9060 3.1290 -1.1658 32 1 0.5926 1.9572 -1.4317 33 1 4.1802 2.6450 -2.0386 34 1 5.4414 1.6551 -3.9071 35 1 4.4525 0.3188 -6.5358 36 1 5.6887 -0.2537 -5.3902 37 1 4.2938 -1.2869 -5.7843 38 1 1.4059 -0.6576 -5.9265 39 1 1.2077 -1.6964 -4.4949 40 1 2.6938 -1.7979 -5.4692 41 1 0.8412 0.1631 -2.9773 42 1 3.2501 3.3937 1.2965 43 1 1.9250 4.0543 0.3087 44 1 1.7955 4.0506 2.0841 45 1 1.4551 0.3391 2.3760 46 1 2.9412 1.3014 2.5598 47 1 1.6244 3.0848 3.6982 48 1 0.1617 2.0813 3.5506 49 1 0.1274 3.1947 7.0609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:42 Heat of formation + Delta-G solvation = 3.500763 kcal Electronic energy + Delta-G solvation = -23280.540040 eV Core-core repulsion = 20206.513552 eV Total energy + Delta-G solvation = -3074.026489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95810 -38.35027 -34.47211 -33.32952 -32.35062 -31.87568 -30.35934 -28.57927 -27.51620 -26.81217 -25.36809 -24.07530 -22.67351 -22.13566 -21.12509 -19.74048 -18.53490 -16.50227 -16.07310 -15.86911 -15.35613 -15.23815 -14.94695 -14.46975 -14.40202 -14.11339 -13.51117 -13.16792 -12.98498 -12.92813 -12.78445 -12.49633 -12.38230 -12.14435 -12.07034 -11.97498 -11.72591 -11.67093 -11.36109 -11.11705 -11.10839 -10.90111 -10.85617 -10.71923 -10.51058 -10.32881 -10.05440 -9.53014 -9.27252 -8.99914 -8.74579 -8.43292 -8.29515 -7.89263 -5.96533 -3.98037 1.31866 1.39142 3.35483 3.39572 3.42430 3.64921 4.36345 4.50023 4.68126 4.72906 4.86371 4.94943 5.01390 5.22409 5.30617 5.31042 5.36170 5.39270 5.47061 5.49568 5.54421 5.59389 5.63469 5.66141 5.69768 5.72432 5.74667 5.76893 5.99982 6.07538 6.12058 6.16984 6.22181 6.36646 6.44167 6.47550 6.49034 6.59507 6.68336 6.71386 6.80560 6.84534 7.02760 7.18965 7.46769 7.54228 7.73366 7.89305 8.04601 8.48365 9.09024 9.65521 11.14813 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.002931 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.371826 B = 9551.720878 C = 9712.564123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 N -0.525 5.525 4 C 0.082 3.918 5 C -0.067 4.067 6 C -0.098 4.098 7 C -0.119 4.119 8 C -0.095 4.095 9 C -0.115 4.115 10 C -0.091 4.091 11 C -0.115 4.115 12 C -0.111 4.111 13 C 0.079 3.921 14 H 0.039 0.961 15 C -0.143 4.143 16 C -0.103 4.103 17 C 0.023 3.977 18 C -0.518 4.518 19 H 0.053 0.947 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.020 0.980 48 H 0.011 0.989 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -4.341 -23.833 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.082 4.082 3 N -0.248 5.248 4 C -0.045 4.045 5 C -0.068 4.068 6 C -0.117 4.117 7 C -0.137 4.137 8 C -0.095 4.095 9 C -0.171 4.171 10 C -0.091 4.091 11 C -0.172 4.172 12 C -0.130 4.130 13 C -0.028 4.028 14 H 0.057 0.943 15 C -0.200 4.200 16 C -0.141 4.141 17 C -0.014 4.014 18 C -0.556 4.556 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.135 0.865 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.029 0.971 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.470 -4.229 -23.658 24.445 hybrid contribution -0.729 -0.408 0.967 1.278 sum 3.741 -4.637 -22.691 23.460 Atomic orbital electron populations 1.22429 0.98605 1.02097 1.02012 1.22191 0.92686 0.90634 1.02675 1.62336 1.59451 1.02016 1.01042 1.21154 0.96537 0.98663 0.88182 1.19786 0.94810 0.96428 0.95766 1.20992 0.93896 1.00075 0.96738 1.20984 0.99755 0.97091 0.95905 1.19692 0.94286 0.97625 0.97885 1.20829 0.99464 1.00634 0.96220 1.19668 0.94067 0.98440 0.96963 1.20830 1.00558 0.96837 0.98969 1.20919 0.99698 0.97006 0.95372 1.21795 0.96554 0.94121 0.90317 0.94337 1.21917 1.01416 0.95704 1.00999 1.21761 1.00892 0.98364 0.93104 1.19128 0.95607 0.95848 0.90858 1.21229 1.31631 1.11263 0.91498 0.92842 1.25010 0.95247 0.95094 0.99098 1.69951 1.35748 1.22828 1.25109 0.86686 0.78778 0.79894 0.82808 1.20241 1.21344 1.20315 0.92500 0.91497 0.93213 0.91299 0.89924 0.89705 0.94039 0.85984 0.86379 0.91496 0.91805 0.91377 0.91454 0.91760 0.91339 0.86537 0.92269 0.93961 0.91123 0.93178 0.92688 0.96148 0.97057 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 9.13 37.16 0.34 -2.29 16 2 C 0.05 0.67 5.32 -3.83 -0.02 0.65 16 3 N -0.52 -7.99 4.55 -228.08 -1.04 -9.03 16 4 C 0.08 1.08 4.82 -4.98 -0.02 1.06 16 5 C -0.07 -0.84 4.77 -104.62 -0.50 -1.34 16 6 C -0.10 -1.19 9.73 -39.58 -0.39 -1.58 16 7 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 8 C -0.09 -0.98 5.88 -104.62 -0.62 -1.60 16 9 C -0.12 -0.87 9.60 36.01 0.35 -0.53 16 10 C -0.09 -0.97 5.88 -104.63 -0.62 -1.58 16 11 C -0.12 -0.92 9.61 36.00 0.35 -0.58 16 12 C -0.11 -1.29 8.00 -39.58 -0.32 -1.61 16 13 C 0.08 1.38 1.54 -67.71 -0.10 1.28 16 14 H 0.04 0.70 6.59 -51.93 -0.34 0.36 16 15 C -0.14 -2.37 8.80 37.16 0.33 -2.04 16 16 C -0.10 -2.16 4.24 -26.73 -0.11 -2.27 16 17 C 0.02 0.59 4.76 -27.88 -0.13 0.46 16 18 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.05 6.23 -51.93 -0.32 0.73 16 28 H 0.05 0.62 6.48 -51.93 -0.34 0.28 16 29 H 0.07 0.95 6.23 -51.93 -0.32 0.62 16 30 H 0.08 1.31 6.22 -51.93 -0.32 0.99 16 31 H 0.08 1.10 5.83 -51.93 -0.30 0.80 16 32 H 0.04 0.54 6.06 -51.92 -0.31 0.22 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.07 0.47 5.94 -51.93 -0.31 0.17 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.60 6.22 -51.93 -0.32 0.28 16 44 H 0.07 1.29 6.49 -51.93 -0.34 0.95 16 45 H 0.05 1.04 5.93 -51.93 -0.31 0.73 16 46 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.02 0.55 6.44 -51.93 -0.33 0.21 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -30.21 370.90 -10.37 -40.58 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.37 Total: -0.41 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -2.26 Total: -27.24 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.30 Total: -35.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.21 -10.37 -40.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.077 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds