Wall clock time and date at job start Tue Mar 31 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47502 * 2 1 4 4 C 1.46899 * 110.99881 * 294.38701 * 3 2 1 5 5 C 1.50698 * 109.47331 * 291.83617 * 4 3 2 6 6 C 1.38252 * 120.00049 * 276.51767 * 5 4 3 7 7 C 1.38215 * 120.00206 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99516 * 359.74867 * 7 6 5 9 9 C 1.50704 * 119.99746 * 180.27426 * 8 7 6 10 10 C 1.38209 * 120.00526 * 0.50236 * 8 7 6 11 11 C 1.50697 * 120.00387 * 179.76474 * 10 8 7 12 12 C 1.38220 * 119.99972 * 96.48810 * 5 4 3 13 13 C 1.46899 * 110.99752 * 58.33705 * 3 2 1 14 14 H 1.08993 * 109.47508 * 293.74238 * 13 3 2 15 15 C 1.53008 * 109.47067 * 173.74397 * 13 3 2 16 16 C 1.52997 * 109.47192 * 53.74805 * 13 3 2 17 17 C 1.53000 * 109.47200 * 184.07441 * 16 13 3 18 18 C 1.50701 * 109.46994 * 181.91532 * 17 16 13 19 19 H 1.08000 * 120.00230 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99895 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47009 * 60.00178 * 22 20 18 24 24 H 1.48495 * 109.47344 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47254 * 300.00449 * 22 20 18 26 26 H 1.08999 * 109.47516 * 182.10189 * 1 2 3 27 27 H 1.09002 * 109.46802 * 302.10059 * 1 2 3 28 28 H 1.09001 * 109.47170 * 62.10162 * 1 2 3 29 29 H 1.08999 * 109.47271 * 239.99736 * 2 1 3 30 30 H 1.09007 * 109.47131 * 119.99895 * 2 1 3 31 31 H 1.09004 * 109.47141 * 171.83779 * 4 3 2 32 32 H 1.09010 * 109.47210 * 51.83719 * 4 3 2 33 33 H 1.08002 * 120.00485 * 359.97438 * 6 5 4 34 34 H 1.07995 * 120.00489 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47274 * 270.22833 * 9 8 7 36 36 H 1.09004 * 109.47502 * 30.23078 * 9 8 7 37 37 H 1.09002 * 109.47092 * 150.23420 * 9 8 7 38 38 H 1.08996 * 109.47167 * 269.72661 * 11 10 8 39 39 H 1.09000 * 109.47210 * 149.73026 * 11 10 8 40 40 H 1.08996 * 109.47402 * 29.73343 * 11 10 8 41 41 H 1.07998 * 119.99772 * 0.02562 * 12 5 4 42 42 H 1.09000 * 109.46962 * 300.00557 * 15 13 3 43 43 H 1.09000 * 109.46898 * 59.99999 * 15 13 3 44 44 H 1.08997 * 109.46936 * 180.02562 * 15 13 3 45 45 H 1.09000 * 109.46975 * 304.07643 * 16 13 3 46 46 H 1.09005 * 109.47443 * 64.07717 * 16 13 3 47 47 H 1.08997 * 109.47391 * 301.91720 * 17 16 13 48 48 H 1.09000 * 109.46801 * 61.91800 * 17 16 13 49 49 H 0.97004 * 119.99917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6614 2.0700 -1.2491 5 6 2.4331 1.4648 -2.3933 6 6 3.7244 1.8837 -2.6543 7 6 4.4324 1.3282 -3.7034 8 6 3.8509 0.3499 -4.4885 9 6 4.6251 -0.2602 -5.6285 10 6 2.5581 -0.0652 -4.2308 11 6 1.9225 -1.1277 -5.0898 12 6 1.8499 0.4904 -3.1813 13 6 1.5165 2.1212 1.1673 14 1 0.4351 2.2321 1.0885 15 6 2.1686 3.5045 1.2177 16 6 1.8585 1.3495 2.4433 17 6 1.2470 2.0634 3.6505 18 6 1.6232 1.3294 4.9118 19 1 2.2374 0.4427 4.8578 20 6 1.1841 1.7905 6.1348 21 7 0.4366 2.8705 6.2005 22 14 1.6510 0.8811 7.6982 23 1 3.1296 0.8567 7.8338 24 1 1.0574 1.5739 8.8699 25 1 1.1368 -0.5106 7.6338 26 1 -0.3634 -1.0269 0.0377 27 1 -0.3633 0.5461 0.8706 28 1 -0.3633 0.4809 -0.9082 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9060 3.1290 -1.1658 32 1 0.5926 1.9572 -1.4317 33 1 4.1802 2.6450 -2.0386 34 1 5.4414 1.6551 -3.9071 35 1 4.4525 0.3188 -6.5358 36 1 5.6887 -0.2537 -5.3902 37 1 4.2938 -1.2869 -5.7843 38 1 1.4059 -0.6576 -5.9265 39 1 1.2077 -1.6964 -4.4949 40 1 2.6938 -1.7979 -5.4692 41 1 0.8412 0.1631 -2.9773 42 1 3.2501 3.3937 1.2965 43 1 1.9250 4.0543 0.3087 44 1 1.7955 4.0506 2.0841 45 1 1.4551 0.3391 2.3760 46 1 2.9412 1.3014 2.5598 47 1 1.6244 3.0848 3.6982 48 1 0.1617 2.0813 3.5506 49 1 0.1274 3.1947 7.0609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172509346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:41 Heat of formation + Delta-G solvation = -11.360997 kcal Electronic energy + Delta-G solvation = -23281.184495 eV Core-core repulsion = 20206.513552 eV Total energy + Delta-G solvation = -3074.670943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89519 -39.52782 -36.02303 -34.67724 -33.72864 -32.89872 -31.74562 -29.94622 -28.48505 -27.75173 -27.01285 -25.27302 -24.14391 -22.96586 -22.66545 -20.79092 -19.92930 -18.51573 -17.21943 -16.81601 -16.67994 -16.46027 -16.25823 -15.85973 -15.60684 -14.98696 -14.69366 -14.36685 -14.23491 -13.90030 -13.87840 -13.57578 -13.54086 -13.50926 -13.18382 -13.16137 -12.88391 -12.84961 -12.63822 -12.57391 -12.49816 -12.41002 -12.33058 -11.80848 -11.74807 -11.70915 -11.48621 -11.34362 -11.19008 -10.98450 -10.51299 -9.58806 -9.29838 -9.09995 -8.19156 -6.29447 0.46818 0.55649 1.38916 1.41884 1.49781 2.40833 2.73653 3.13711 3.21984 3.85691 3.90481 4.04422 4.07474 4.09187 4.17463 4.21993 4.34260 4.39285 4.43652 4.50105 4.56751 4.62346 4.65442 4.76007 4.77926 4.83707 4.90112 4.92204 4.94970 4.98009 5.01207 5.05239 5.08653 5.09878 5.16169 5.26597 5.29672 5.32408 5.43471 5.44430 5.54397 5.61680 5.79608 5.80681 5.82174 5.88458 6.16116 6.22888 6.25342 6.32407 6.87293 7.39099 8.92345 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.002931 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.371826 B = 9551.720878 C = 9712.564123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.087 3.913 5 C -0.082 4.082 6 C -0.114 4.114 7 C -0.127 4.127 8 C -0.100 4.100 9 C -0.114 4.114 10 C -0.099 4.099 11 C -0.114 4.114 12 C -0.120 4.120 13 C 0.090 3.910 14 H 0.031 0.969 15 C -0.137 4.137 16 C -0.087 4.087 17 C 0.030 3.970 18 C -0.543 4.543 19 H 0.055 0.945 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.268 1.268 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.001 0.999 48 H -0.015 1.015 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -5.732 -25.436 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.079 4.079 3 N -0.251 5.251 4 C -0.040 4.040 5 C -0.083 4.083 6 C -0.132 4.132 7 C -0.145 4.145 8 C -0.100 4.100 9 C -0.170 4.170 10 C -0.099 4.099 11 C -0.171 4.171 12 C -0.139 4.139 13 C -0.018 4.018 14 H 0.049 0.951 15 C -0.195 4.195 16 C -0.125 4.125 17 C -0.007 4.007 18 C -0.581 4.581 19 H 0.074 0.926 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.193 1.193 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.020 0.980 48 H 0.003 0.997 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.242 -5.628 -25.280 26.424 hybrid contribution -0.959 0.025 1.382 1.682 sum 4.284 -5.603 -23.898 24.917 Atomic orbital electron populations 1.22348 0.97854 1.02744 1.01469 1.22162 0.93258 0.90138 1.02391 1.62280 1.59467 1.02268 1.01087 1.21138 0.96942 0.98577 0.87374 1.19728 0.95131 0.97421 0.95973 1.21106 0.94072 1.00566 0.97489 1.21237 1.00501 0.97174 0.95593 1.20079 0.94475 0.97143 0.98313 1.20882 0.99498 1.01156 0.95485 1.20015 0.94280 0.98749 0.96853 1.20877 1.00955 0.96341 0.98884 1.21051 1.00109 0.96954 0.95753 1.21523 0.96202 0.94221 0.89867 0.95099 1.21837 1.01080 0.95258 1.01295 1.21503 0.99724 0.98250 0.93051 1.18989 0.94026 0.95219 0.92480 1.21668 1.31848 1.11645 0.92896 0.92629 1.25939 0.95008 0.95916 1.02827 1.70083 1.36703 1.24324 1.26151 0.85556 0.78849 0.78772 0.78221 1.19238 1.20719 1.19280 0.91126 0.94006 0.91835 0.90053 0.91604 0.89588 0.93677 0.86154 0.84803 0.90384 0.91106 0.90321 0.90427 0.91469 0.90084 0.86013 0.92343 0.91294 0.93409 0.93137 0.93433 0.98036 0.99657 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.95 9.13 71.98 0.66 -4.29 16 2 C 0.05 1.38 5.32 86.30 0.46 1.84 16 3 N -0.53 -15.90 4.55 -875.51 -3.99 -19.88 16 4 C 0.09 2.22 4.82 85.56 0.41 2.63 16 5 C -0.08 -1.96 4.77 -19.87 -0.09 -2.06 16 6 C -0.11 -2.65 9.73 22.27 0.22 -2.43 16 7 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 8 C -0.10 -1.85 5.88 -19.87 -0.12 -1.97 16 9 C -0.11 -1.40 9.60 71.24 0.68 -0.72 16 10 C -0.10 -1.89 5.88 -19.87 -0.12 -2.01 16 11 C -0.11 -1.52 9.61 71.23 0.68 -0.83 16 12 C -0.12 -2.60 8.00 22.27 0.18 -2.42 16 13 C 0.09 3.18 1.54 44.92 0.07 3.25 16 14 H 0.03 1.15 6.59 -2.39 -0.02 1.14 16 15 C -0.14 -4.62 8.80 71.98 0.63 -3.99 16 16 C -0.09 -3.76 4.24 30.59 0.13 -3.63 16 17 C 0.03 1.63 4.76 29.85 0.14 1.77 16 18 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 19 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 20 C 0.00 0.05 5.46 84.66 0.46 0.51 16 21 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 22 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.32 6.23 -2.39 -0.01 1.31 16 28 H 0.06 1.50 6.48 -2.39 -0.02 1.49 16 29 H 0.08 2.14 6.23 -2.39 -0.01 2.12 16 30 H 0.07 2.09 6.22 -2.38 -0.01 2.08 16 31 H 0.09 2.15 5.83 -2.39 -0.01 2.14 16 32 H 0.05 1.12 6.06 -2.38 -0.01 1.11 16 33 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.08 0.80 5.94 -2.39 -0.01 0.79 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 40 H 0.08 0.87 5.94 -2.39 -0.01 0.85 16 41 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.92 6.22 -2.39 -0.01 1.91 16 44 H 0.05 1.81 6.49 -2.39 -0.02 1.80 16 45 H 0.05 2.14 5.93 -2.39 -0.01 2.13 16 46 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.00 0.08 6.44 -2.39 -0.02 0.06 16 48 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -65.34 370.90 4.08 -61.26 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.91 Total: 16.89 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 4.85 Total: -48.15 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -3.70 Total: -77.14 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.34 4.08 -61.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.895 kcal (2) G-P(sol) polarization free energy of solvation -65.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds