Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46997 * 2 1 4 4 N 1.46900 * 109.47028 * 181.05575 * 3 2 1 5 5 C 1.46900 * 111.00171 * 294.50333 * 4 3 2 6 6 C 1.50699 * 109.47221 * 295.72788 * 5 4 3 7 7 H 1.08003 * 120.00349 * 3.87387 * 6 5 4 8 8 C 1.37879 * 119.99910 * 183.87014 * 6 5 4 9 9 N 1.31511 * 119.99937 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00128 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46856 * 89.99806 * 10 8 6 12 12 H 1.48498 * 109.47237 * 210.00020 * 10 8 6 13 13 H 1.48505 * 109.46825 * 330.00172 * 10 8 6 14 14 C 1.46893 * 111.00132 * 58.46585 * 4 3 2 15 15 H 1.09008 * 109.46874 * 294.77571 * 14 4 3 16 16 C 1.52999 * 109.47238 * 174.78318 * 14 4 3 17 17 C 1.52994 * 109.47616 * 54.77488 * 14 4 3 18 18 C 1.50698 * 109.47294 * 185.09536 * 17 14 4 19 19 C 1.38237 * 120.00182 * 84.53672 * 18 17 14 20 20 C 1.38236 * 120.00024 * 179.72587 * 19 18 17 21 21 C 1.38232 * 119.99855 * 0.25723 * 20 19 18 22 22 C 1.50701 * 119.99623 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47387 * 90.00112 * 22 21 20 24 24 C 1.38236 * 120.00479 * 359.97438 * 21 20 19 25 25 C 1.38231 * 119.99861 * 0.02562 * 24 21 20 26 26 H 1.08993 * 109.47173 * 299.99412 * 1 2 3 27 27 H 1.08997 * 109.47376 * 59.99853 * 1 2 3 28 28 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47486 * 240.00503 * 2 1 3 30 30 H 1.08997 * 109.47670 * 119.99686 * 2 1 3 31 31 H 1.08999 * 109.46786 * 61.05693 * 3 2 1 32 32 H 1.08995 * 109.47094 * 301.05393 * 3 2 1 33 33 H 1.08997 * 109.46601 * 55.72776 * 5 4 3 34 34 H 1.08994 * 109.47030 * 175.72593 * 5 4 3 35 35 H 0.96998 * 120.00306 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47267 * 180.02562 * 16 14 4 37 37 H 1.09007 * 109.47055 * 299.99219 * 16 14 4 38 38 H 1.08995 * 109.47411 * 59.99410 * 16 14 4 39 39 H 1.09001 * 109.46779 * 65.09772 * 17 14 4 40 40 H 1.09001 * 109.47518 * 305.09721 * 17 14 4 41 41 H 1.08003 * 119.99789 * 0.02562 * 19 18 17 42 42 H 1.07999 * 119.99509 * 180.28187 * 20 19 18 43 43 H 1.09004 * 109.47322 * 209.99881 * 22 21 20 44 44 H 1.09001 * 109.47430 * 329.99840 * 22 21 20 45 45 H 1.09001 * 109.46912 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.46739 * 299.99843 * 23 22 21 47 47 H 1.09000 * 109.46966 * 60.00044 * 23 22 21 48 48 H 1.08000 * 120.00222 * 179.97438 * 24 21 20 49 49 H 1.08000 * 120.00167 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5087 1.4427 -0.0255 5 6 4.0568 0.8663 1.2095 6 6 3.6813 1.7376 2.3803 7 1 3.0422 2.5955 2.2320 8 6 4.1535 1.4395 3.6410 9 7 3.8254 2.1996 4.6628 10 14 5.2582 -0.0448 3.8977 11 1 6.6774 0.3599 3.7324 12 1 5.0532 -0.5836 5.2663 13 1 4.9221 -1.0907 2.8985 14 6 4.0148 0.7327 -1.2077 15 1 3.7440 -0.3212 -1.1421 16 6 5.5378 0.8650 -1.2690 17 6 3.3988 1.3397 -2.4698 18 6 3.8190 0.5336 -3.6716 19 6 3.1139 -0.6023 -4.0230 20 6 3.4960 -1.3387 -5.1288 21 6 4.5864 -0.9421 -5.8801 22 6 5.0025 -1.7445 -7.0859 23 6 4.2789 -1.2148 -8.3256 24 6 5.2945 0.1912 -5.5261 25 6 4.9125 0.9275 -4.4203 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6921 1.9509 0.8993 32 1 1.6613 1.9618 -0.8803 33 1 3.6492 -0.1340 1.3556 34 1 5.1425 0.8087 1.1330 35 1 4.1579 1.9901 5.5496 36 1 5.9132 0.3385 -2.1465 37 1 5.8086 1.9188 -1.3347 38 1 5.9766 0.4325 -0.3699 39 1 3.7428 2.3678 -2.5835 40 1 2.3121 1.3274 -2.3859 41 1 2.2615 -0.9118 -3.4363 42 1 2.9422 -2.2236 -5.4058 43 1 6.0795 -1.6550 -7.2280 44 1 4.7420 -2.7918 -6.9330 45 1 4.5803 -1.7949 -9.1978 46 1 3.2020 -1.3043 -8.1836 47 1 4.5395 -0.1675 -8.4786 48 1 6.1466 0.5008 -6.1129 49 1 5.4659 1.8126 -4.1434 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173242328.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = 4.958376 kcal Electronic energy + Delta-G solvation = -23511.995688 eV Core-core repulsion = 20438.032406 eV Total energy + Delta-G solvation = -3073.963282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.76290 -38.12790 -34.93554 -33.01764 -32.74020 -31.20357 -30.92422 -29.15013 -27.86916 -26.18372 -24.41221 -23.40481 -22.73776 -21.82618 -21.39723 -20.34608 -18.42339 -16.84284 -16.28310 -15.72783 -15.51911 -15.00279 -14.78052 -14.42489 -13.97045 -13.85490 -13.68669 -13.54350 -13.33233 -13.06640 -12.92826 -12.58176 -12.35021 -12.00968 -11.83081 -11.68975 -11.65712 -11.44365 -11.34581 -11.11512 -10.95653 -10.91441 -10.81898 -10.73377 -10.56907 -10.45310 -10.05810 -9.83486 -9.71926 -9.17201 -8.89163 -8.52809 -8.40834 -7.23888 -6.02670 -3.98683 1.35330 1.42382 3.29332 3.36965 3.39216 3.74653 4.44016 4.58891 4.69646 4.72183 4.97953 5.00898 5.12988 5.17677 5.29341 5.32727 5.34623 5.42634 5.45899 5.49240 5.51849 5.57891 5.65765 5.75474 5.77787 5.82356 5.91931 5.97973 6.01993 6.05407 6.16181 6.19838 6.22675 6.26979 6.36582 6.45916 6.46537 6.49390 6.58934 6.65051 6.66413 6.80416 6.88463 7.01419 7.04023 7.12343 7.65771 7.98242 8.13494 8.70059 9.05917 9.59751 11.10574 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.003649 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.036316 B = 7672.364704 C = 8251.572527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.061 3.939 4 N -0.521 5.521 5 C 0.158 3.842 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.085 3.915 15 H 0.034 0.966 16 C -0.145 4.145 17 C -0.079 4.079 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.095 4.095 22 C -0.083 4.083 23 C -0.146 4.146 24 C -0.118 4.118 25 C -0.111 4.111 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.058 0.942 33 H -0.010 1.010 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.117 0.883 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -6.985 -22.256 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.068 4.068 4 N -0.244 5.244 5 C 0.032 3.968 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.024 4.024 15 H 0.052 0.948 16 C -0.203 4.203 17 C -0.117 4.117 18 C -0.070 4.070 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.121 4.121 23 C -0.203 4.203 24 C -0.136 4.136 25 C -0.129 4.129 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.007 0.993 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.135 0.865 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.225 -6.463 -22.078 23.005 hybrid contribution 0.372 -1.687 0.448 1.785 sum 0.147 -8.150 -21.630 23.115 Atomic orbital electron populations 1.21657 0.96293 1.00690 1.01494 1.22179 0.95791 1.00459 1.01737 1.22173 0.88067 0.94374 1.02147 1.62220 1.06533 1.53660 1.02001 1.20237 0.95073 0.93833 0.87687 1.21040 1.30880 1.12405 0.89920 0.90193 1.24877 0.96152 0.96221 0.96034 1.69889 1.45774 1.38635 0.99811 0.86921 0.81681 0.83995 0.77535 1.20170 1.21290 1.19326 1.21497 0.95066 0.95478 0.90356 0.94847 1.21912 0.95076 1.02244 1.01050 1.20786 1.01015 0.98876 0.90991 1.19975 0.95114 0.95550 0.96385 1.21046 1.00140 0.95115 0.97030 1.20954 0.97022 0.99926 0.95638 1.19815 0.96277 0.96383 0.97016 1.20513 1.00395 0.98679 0.92490 1.21747 1.00636 1.01229 0.96718 1.20975 0.99921 0.95309 0.97419 1.21090 0.96682 1.00091 0.95072 0.92487 0.93390 0.93673 0.92993 0.91302 0.89437 0.92376 0.99284 0.95449 0.92752 0.93034 0.92000 0.92445 0.90392 0.90633 0.86330 0.86561 0.91260 0.91293 0.92615 0.92605 0.92586 0.86495 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.15 0.37 -1.67 16 2 C -0.16 -2.75 5.20 -26.73 -0.14 -2.88 16 3 C 0.06 1.13 4.63 -3.82 -0.02 1.11 16 4 N -0.52 -10.62 4.58 -228.09 -1.05 -11.67 16 5 C 0.16 3.78 3.41 -4.98 -0.02 3.76 16 6 C -0.50 -14.18 9.06 -34.44 -0.31 -14.49 16 7 H 0.08 2.44 7.10 -52.48 -0.37 2.07 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 10 Si 0.87 21.65 27.39 -169.99 -4.66 16.99 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.46 6.66 56.52 0.38 -6.08 16 14 C 0.08 1.44 1.54 -67.72 -0.10 1.33 16 15 H 0.03 0.59 6.55 -51.92 -0.34 0.25 16 16 C -0.15 -2.39 8.67 37.16 0.32 -2.06 16 17 C -0.08 -1.12 4.55 -27.89 -0.13 -1.25 16 18 C -0.07 -0.90 4.56 -104.62 -0.48 -1.38 16 19 C -0.12 -1.42 9.72 -39.58 -0.38 -1.80 16 20 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 21 C -0.09 -1.00 5.13 -104.62 -0.54 -1.54 16 22 C -0.08 -0.68 6.06 -27.88 -0.17 -0.84 16 23 C -0.15 -1.05 9.90 37.16 0.37 -0.68 16 24 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 25 C -0.11 -1.33 8.37 -39.58 -0.33 -1.66 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 30 H 0.07 1.34 6.50 -51.93 -0.34 1.01 16 31 H 0.09 1.87 6.52 -51.93 -0.34 1.53 16 32 H 0.06 0.95 6.20 -51.93 -0.32 0.63 16 33 H -0.01 -0.25 5.61 -51.93 -0.29 -0.55 16 34 H 0.03 0.67 5.16 -51.93 -0.27 0.40 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.05 0.75 6.53 -51.93 -0.34 0.41 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.03 6.26 -51.93 -0.33 0.70 16 39 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 40 H 0.08 1.05 6.01 -51.93 -0.31 0.74 16 41 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 44 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 45 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -29.99 373.02 -10.38 -40.37 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.65 Total: 1.08 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.42 Total: -25.53 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.27 Total: -38.53 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.66 Total: 16.99 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.99 -10.38 -40.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173242328.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.325 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds