Wall clock time and date at job start Tue Mar 31 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46997 * 2 1 4 4 N 1.46900 * 109.47028 * 181.05575 * 3 2 1 5 5 C 1.46900 * 111.00171 * 294.50333 * 4 3 2 6 6 C 1.50699 * 109.47221 * 295.72788 * 5 4 3 7 7 H 1.08003 * 120.00349 * 3.87387 * 6 5 4 8 8 C 1.37879 * 119.99910 * 183.87014 * 6 5 4 9 9 N 1.31511 * 119.99937 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00128 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46856 * 89.99806 * 10 8 6 12 12 H 1.48498 * 109.47237 * 210.00020 * 10 8 6 13 13 H 1.48505 * 109.46825 * 330.00172 * 10 8 6 14 14 C 1.46893 * 111.00132 * 58.46585 * 4 3 2 15 15 H 1.09008 * 109.46874 * 294.77571 * 14 4 3 16 16 C 1.52999 * 109.47238 * 174.78318 * 14 4 3 17 17 C 1.52994 * 109.47616 * 54.77488 * 14 4 3 18 18 C 1.50698 * 109.47294 * 185.09536 * 17 14 4 19 19 C 1.38237 * 120.00182 * 84.53672 * 18 17 14 20 20 C 1.38236 * 120.00024 * 179.72587 * 19 18 17 21 21 C 1.38232 * 119.99855 * 0.25723 * 20 19 18 22 22 C 1.50701 * 119.99623 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47387 * 90.00112 * 22 21 20 24 24 C 1.38236 * 120.00479 * 359.97438 * 21 20 19 25 25 C 1.38231 * 119.99861 * 0.02562 * 24 21 20 26 26 H 1.08993 * 109.47173 * 299.99412 * 1 2 3 27 27 H 1.08997 * 109.47376 * 59.99853 * 1 2 3 28 28 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47486 * 240.00503 * 2 1 3 30 30 H 1.08997 * 109.47670 * 119.99686 * 2 1 3 31 31 H 1.08999 * 109.46786 * 61.05693 * 3 2 1 32 32 H 1.08995 * 109.47094 * 301.05393 * 3 2 1 33 33 H 1.08997 * 109.46601 * 55.72776 * 5 4 3 34 34 H 1.08994 * 109.47030 * 175.72593 * 5 4 3 35 35 H 0.96998 * 120.00306 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47267 * 180.02562 * 16 14 4 37 37 H 1.09007 * 109.47055 * 299.99219 * 16 14 4 38 38 H 1.08995 * 109.47411 * 59.99410 * 16 14 4 39 39 H 1.09001 * 109.46779 * 65.09772 * 17 14 4 40 40 H 1.09001 * 109.47518 * 305.09721 * 17 14 4 41 41 H 1.08003 * 119.99789 * 0.02562 * 19 18 17 42 42 H 1.07999 * 119.99509 * 180.28187 * 20 19 18 43 43 H 1.09004 * 109.47322 * 209.99881 * 22 21 20 44 44 H 1.09001 * 109.47430 * 329.99840 * 22 21 20 45 45 H 1.09001 * 109.46912 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.46739 * 299.99843 * 23 22 21 47 47 H 1.09000 * 109.46966 * 60.00044 * 23 22 21 48 48 H 1.08000 * 120.00222 * 179.97438 * 24 21 20 49 49 H 1.08000 * 120.00167 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5087 1.4427 -0.0255 5 6 4.0568 0.8663 1.2095 6 6 3.6813 1.7376 2.3803 7 1 3.0422 2.5955 2.2320 8 6 4.1535 1.4395 3.6410 9 7 3.8254 2.1996 4.6628 10 14 5.2582 -0.0448 3.8977 11 1 6.6774 0.3599 3.7324 12 1 5.0532 -0.5836 5.2663 13 1 4.9221 -1.0907 2.8985 14 6 4.0148 0.7327 -1.2077 15 1 3.7440 -0.3212 -1.1421 16 6 5.5378 0.8650 -1.2690 17 6 3.3988 1.3397 -2.4698 18 6 3.8190 0.5336 -3.6716 19 6 3.1139 -0.6023 -4.0230 20 6 3.4960 -1.3387 -5.1288 21 6 4.5864 -0.9421 -5.8801 22 6 5.0025 -1.7445 -7.0859 23 6 4.2789 -1.2148 -8.3256 24 6 5.2945 0.1912 -5.5261 25 6 4.9125 0.9275 -4.4203 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6921 1.9509 0.8993 32 1 1.6613 1.9618 -0.8803 33 1 3.6492 -0.1340 1.3556 34 1 5.1425 0.8087 1.1330 35 1 4.1579 1.9901 5.5496 36 1 5.9132 0.3385 -2.1465 37 1 5.8086 1.9188 -1.3347 38 1 5.9766 0.4325 -0.3699 39 1 3.7428 2.3678 -2.5835 40 1 2.3121 1.3274 -2.3859 41 1 2.2615 -0.9118 -3.4363 42 1 2.9422 -2.2236 -5.4058 43 1 6.0795 -1.6550 -7.2280 44 1 4.7420 -2.7918 -6.9330 45 1 4.5803 -1.7949 -9.1978 46 1 3.2020 -1.3043 -8.1836 47 1 4.5395 -0.1675 -8.4786 48 1 6.1466 0.5008 -6.1129 49 1 5.4659 1.8126 -4.1434 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173242328.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:08 Heat of formation + Delta-G solvation = -10.434762 kcal Electronic energy + Delta-G solvation = -23512.663184 eV Core-core repulsion = 20438.032406 eV Total energy + Delta-G solvation = -3074.630778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75892 -39.48505 -35.92803 -34.79189 -34.18002 -32.60118 -31.77126 -30.29955 -29.56233 -27.37698 -25.92143 -24.38543 -23.64595 -23.33614 -22.71838 -21.31612 -19.90050 -18.93651 -17.40405 -16.75715 -16.66247 -16.50110 -16.01476 -15.85729 -15.36834 -15.09879 -14.58776 -14.55418 -14.46469 -14.41975 -14.12823 -13.88563 -13.60302 -13.28922 -13.19828 -12.94440 -12.83329 -12.67817 -12.56453 -12.37497 -12.28954 -12.20474 -12.14250 -11.88171 -11.86024 -11.62687 -11.58238 -11.48920 -11.24806 -11.19112 -10.74015 -9.74986 -9.30953 -8.87133 -8.27201 -6.28274 0.47928 0.56724 1.32145 1.32911 1.43555 2.33471 2.86068 3.05616 3.26583 3.89682 3.90871 4.05609 4.08102 4.12817 4.17102 4.21172 4.25300 4.37926 4.45797 4.50215 4.55231 4.58442 4.66006 4.68025 4.75070 4.80589 4.89448 4.92270 4.95561 5.01137 5.02766 5.09919 5.10940 5.11682 5.18527 5.22111 5.27481 5.28568 5.35543 5.38714 5.41216 5.51318 5.59713 5.61784 5.78735 5.83485 6.05231 6.19345 6.45788 6.72371 6.77910 7.34403 8.89473 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.003649 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.036316 B = 7672.364704 C = 8251.572527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.154 4.154 3 C 0.063 3.937 4 N -0.536 5.536 5 C 0.171 3.829 6 C -0.507 4.507 7 H 0.039 0.961 8 C 0.009 3.991 9 N -0.948 5.948 10 Si 0.939 3.061 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.255 1.255 14 C 0.087 3.913 15 H 0.030 0.970 16 C -0.141 4.141 17 C -0.067 4.067 18 C -0.085 4.085 19 C -0.125 4.125 20 C -0.124 4.124 21 C -0.095 4.095 22 C -0.083 4.083 23 C -0.144 4.144 24 C -0.124 4.124 25 C -0.119 4.119 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.084 0.916 33 H -0.015 1.015 34 H 0.028 0.972 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.136 0.864 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -8.972 -25.043 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.193 4.193 3 C -0.065 4.065 4 N -0.259 5.259 5 C 0.044 3.956 6 C -0.546 4.546 7 H 0.058 0.942 8 C -0.187 4.187 9 N -0.590 5.590 10 Si 0.763 3.237 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.179 1.179 14 C -0.021 4.021 15 H 0.048 0.952 16 C -0.198 4.198 17 C -0.104 4.104 18 C -0.086 4.086 19 C -0.143 4.143 20 C -0.142 4.142 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.201 4.201 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.003 0.997 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.153 0.847 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.450 -8.451 -24.892 26.291 hybrid contribution 0.113 -1.004 1.218 1.582 sum 0.564 -9.455 -23.674 25.498 Atomic orbital electron populations 1.21620 0.94088 1.01982 1.01939 1.22068 0.97727 0.98657 1.00891 1.22120 0.87278 0.95636 1.01424 1.62123 1.07604 1.54326 1.01875 1.19940 0.95051 0.92638 0.87986 1.21269 1.29816 1.11653 0.91814 0.94236 1.25758 0.97870 0.99459 0.95660 1.70039 1.47559 1.40920 1.00452 0.85833 0.79789 0.80267 0.77811 1.19013 1.20744 1.17919 1.21561 0.95543 0.95055 0.89926 0.95208 1.21878 0.94607 1.02259 1.01101 1.20615 1.00825 0.98771 0.90233 1.19853 0.96200 0.96135 0.96394 1.21175 1.00348 0.95134 0.97651 1.21203 0.97359 1.00376 0.95258 1.20157 0.95666 0.96235 0.97417 1.20570 1.01039 0.98726 0.91691 1.21729 1.00279 1.01250 0.96869 1.21236 1.00493 0.95251 0.97174 1.21223 0.96519 1.00505 0.95472 0.93776 0.91231 0.91957 0.91349 0.94443 0.93235 0.89815 0.99701 0.95362 0.92559 0.90924 0.92195 0.94196 0.90661 0.90452 0.86029 0.84879 0.90371 0.90501 0.91173 0.93012 0.92935 0.84664 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.15 -5.15 5.20 30.60 0.16 -4.99 16 3 C 0.06 2.39 4.63 86.31 0.40 2.79 16 4 N -0.54 -22.07 4.58 -875.54 -4.01 -26.08 16 5 C 0.17 8.31 3.41 85.56 0.29 8.60 16 6 C -0.51 -29.64 9.06 25.60 0.23 -29.41 16 7 H 0.04 2.57 7.10 -2.91 -0.02 2.55 16 8 C 0.01 0.56 5.47 84.66 0.46 1.02 16 9 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 10 Si 0.94 45.07 27.39 68.60 1.88 46.95 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.26 -11.60 6.66 99.48 0.66 -10.94 16 14 C 0.09 2.88 1.54 44.91 0.07 2.95 16 15 H 0.03 1.02 6.55 -2.38 -0.02 1.01 16 16 C -0.14 -4.48 8.67 71.98 0.62 -3.85 16 17 C -0.07 -1.81 4.55 29.85 0.14 -1.67 16 18 C -0.09 -2.05 4.56 -19.86 -0.09 -2.14 16 19 C -0.13 -2.81 9.72 22.27 0.22 -2.59 16 20 C -0.12 -2.43 9.70 22.27 0.22 -2.21 16 21 C -0.09 -1.73 5.13 -19.87 -0.10 -1.83 16 22 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16 23 C -0.14 -1.67 9.90 71.98 0.71 -0.96 16 24 C -0.12 -2.36 9.70 22.27 0.22 -2.15 16 25 C -0.12 -2.61 8.37 22.27 0.19 -2.42 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.07 2.05 6.40 -2.39 -0.02 2.03 16 30 H 0.04 1.47 6.50 -2.39 -0.02 1.46 16 31 H 0.05 2.23 6.52 -2.39 -0.02 2.22 16 32 H 0.08 2.70 6.20 -2.39 -0.01 2.69 16 33 H -0.01 -0.72 5.61 -2.39 -0.01 -0.73 16 34 H 0.03 1.38 5.16 -2.39 -0.01 1.37 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.07 1.98 6.53 -2.39 -0.02 1.96 16 37 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.04 1.39 6.26 -2.39 -0.01 1.37 16 39 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 40 H 0.08 2.03 6.01 -2.39 -0.01 2.01 16 41 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.08 0.90 8.09 -2.38 -0.02 0.88 16 44 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 48 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 49 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -66.45 373.02 3.64 -62.81 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.85 Total: 18.91 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 4.62 Total: -42.82 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.71 Total: -85.84 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -66.45 3.64 -62.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173242328.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.377 kcal (2) G-P(sol) polarization free energy of solvation -66.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds