Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47313 * 179.97438 * 4 3 2 6 6 C 1.36931 * 120.00175 * 263.77767 * 5 4 3 7 7 H 1.08005 * 119.99931 * 188.23436 * 6 5 4 8 8 C 1.38808 * 120.00101 * 8.23009 * 6 5 4 9 9 N 1.31621 * 120.00183 * 25.23174 * 8 6 5 10 10 Si 1.86806 * 120.00007 * 205.23239 * 8 6 5 11 11 H 1.48501 * 109.47013 * 84.98935 * 10 8 6 12 12 H 1.48500 * 109.47251 * 204.98836 * 10 8 6 13 13 H 1.48497 * 109.47115 * 324.98822 * 10 8 6 14 14 C 1.46506 * 119.99469 * 83.77364 * 5 4 3 15 15 H 1.08997 * 109.47541 * 0.02562 * 14 5 4 16 16 C 1.53000 * 109.46883 * 120.00519 * 14 5 4 17 17 C 1.53007 * 109.46775 * 240.00013 * 14 5 4 18 18 C 1.50693 * 109.47204 * 65.00544 * 17 14 5 19 19 C 1.38234 * 120.00026 * 269.72634 * 18 17 14 20 20 C 1.38236 * 120.00461 * 179.76836 * 19 18 17 21 21 C 1.38246 * 119.99424 * 0.49903 * 20 19 18 22 22 C 1.50700 * 119.99697 * 179.72797 * 21 20 19 23 23 C 1.53008 * 109.46853 * 270.02437 * 22 21 20 24 24 C 1.38236 * 120.00011 * 359.75415 * 21 20 19 25 25 C 1.38231 * 119.99894 * 359.97438 * 24 21 20 26 26 H 1.08998 * 109.46965 * 300.00316 * 1 2 3 27 27 H 1.08997 * 109.47248 * 60.00396 * 1 2 3 28 28 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46965 * 239.99684 * 2 1 3 30 30 H 1.09004 * 109.46730 * 119.99989 * 2 1 3 31 31 H 1.08998 * 109.47464 * 59.99989 * 3 2 1 32 32 H 1.09004 * 109.47315 * 299.99631 * 3 2 1 33 33 H 1.09002 * 109.47425 * 59.99844 * 4 3 2 34 34 H 1.08997 * 109.47248 * 299.99604 * 4 3 2 35 35 H 0.96995 * 119.99805 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47444 * 59.99436 * 16 14 5 37 37 H 1.08994 * 109.47220 * 179.97438 * 16 14 5 38 38 H 1.09002 * 109.46976 * 299.99946 * 16 14 5 39 39 H 1.08998 * 109.46663 * 185.00693 * 17 14 5 40 40 H 1.08994 * 109.47295 * 305.00071 * 17 14 5 41 41 H 1.08001 * 120.00039 * 359.97438 * 19 18 17 42 42 H 1.07992 * 120.00255 * 180.22725 * 20 19 18 43 43 H 1.08994 * 109.47137 * 30.01906 * 22 21 20 44 44 H 1.09001 * 109.46747 * 150.02653 * 22 21 20 45 45 H 1.09005 * 109.46526 * 300.00091 * 23 22 21 46 46 H 1.09001 * 109.47174 * 59.99753 * 23 22 21 47 47 H 1.08997 * 109.46909 * 180.02562 * 23 22 21 48 48 H 1.08000 * 119.99818 * 179.97438 * 24 21 20 49 49 H 1.08002 * 119.99703 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4083 3.4256 -1.1790 7 1 4.8916 4.3915 -1.1696 8 6 4.1420 2.7945 -2.3863 9 7 3.1630 1.9186 -2.4692 10 14 5.1730 3.1884 -3.8935 11 1 6.3983 2.3494 -3.8881 12 1 4.3849 2.9056 -5.1200 13 1 5.5553 4.6231 -3.8706 14 6 4.1723 3.5608 1.2610 15 1 3.8515 2.9233 2.0849 16 6 5.6279 3.9792 1.4774 17 6 3.2863 4.8070 1.2050 18 6 1.8405 4.3919 1.1151 19 6 1.2502 4.2062 -0.1210 20 6 -0.0747 3.8207 -0.2034 21 6 -0.8124 3.6309 0.9503 22 6 -2.2585 3.2167 0.8604 23 6 -3.1436 4.4635 0.8044 24 6 -0.2235 3.8217 2.1864 25 6 1.1030 4.2017 2.2687 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 2.9772 1.4774 -3.3128 36 1 5.9491 4.6166 0.6536 37 1 5.7127 4.5280 2.4153 38 1 6.2591 3.0914 1.5172 39 1 3.4384 5.4016 2.1057 40 1 3.5490 5.4005 0.3293 41 1 1.8252 4.3590 -1.0224 42 1 -0.5348 3.6721 -1.1691 43 1 -2.4108 2.6223 -0.0404 44 1 -2.5216 2.6233 1.7361 45 1 -2.9912 5.0579 1.7054 46 1 -2.8805 5.0569 -0.0712 47 1 -4.1896 4.1639 0.7399 48 1 -0.7999 3.6739 3.0877 49 1 1.5628 4.3512 3.2345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173244840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = 21.846802 kcal Electronic energy + Delta-G solvation = -25190.547321 eV Core-core repulsion = 22117.316377 eV Total energy + Delta-G solvation = -3073.230945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.11080 -36.75146 -34.39029 -33.53492 -32.22580 -30.18356 -30.04271 -29.12154 -27.21816 -25.71072 -24.06316 -22.77160 -21.98713 -21.65139 -20.23999 -19.60636 -19.37073 -16.20276 -15.48205 -15.36855 -14.83817 -14.51780 -14.10149 -13.81512 -13.45370 -13.40000 -13.21802 -13.17131 -12.68628 -12.62172 -12.40496 -12.02427 -11.93078 -11.69522 -11.35414 -11.26814 -11.13317 -10.96861 -10.83235 -10.79350 -10.74140 -10.41959 -10.30761 -10.13236 -9.97202 -9.90552 -9.79705 -9.70909 -9.34301 -9.04020 -8.19421 -8.04052 -7.67289 -6.71345 -5.66963 -2.95540 2.08186 2.20255 3.43047 3.50655 3.52927 4.49732 4.56869 5.14836 5.21477 5.39827 5.41585 5.56592 5.57093 5.68290 5.70462 5.84820 5.92121 5.93574 5.99241 6.03234 6.04504 6.13416 6.18934 6.24986 6.31230 6.34627 6.40058 6.50544 6.57376 6.60595 6.66611 6.69951 6.74175 6.86041 6.88125 6.89479 7.02951 7.07779 7.14714 7.19085 7.35639 7.39055 7.47069 7.57291 7.78991 7.83119 7.95339 8.30321 8.46293 9.35415 9.99331 10.45765 11.35284 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.006530 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.234949 B = 4286.598117 C = 4780.188610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.172 3.828 5 N -0.588 5.588 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.001 4.001 9 N -0.888 5.888 10 Si 0.884 3.116 11 H -0.292 1.292 12 H -0.296 1.296 13 H -0.285 1.285 14 C 0.178 3.822 15 H 0.050 0.950 16 C -0.154 4.154 17 C -0.092 4.092 18 C -0.061 4.061 19 C -0.060 4.060 20 C -0.115 4.115 21 C -0.096 4.096 22 C -0.080 4.080 23 C -0.144 4.144 24 C -0.132 4.132 25 C -0.128 4.128 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.107 0.893 33 H 0.086 0.914 34 H -0.007 1.007 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.104 0.896 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 2.243 7.688 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.161 4.161 4 C 0.047 3.953 5 N -0.308 5.308 6 C -0.366 4.366 7 H 0.088 0.912 8 C -0.198 4.198 9 N -0.534 5.534 10 Si 0.716 3.284 11 H -0.220 1.220 12 H -0.223 1.223 13 H -0.211 1.211 14 C 0.070 3.930 15 H 0.068 0.932 16 C -0.213 4.213 17 C -0.132 4.132 18 C -0.061 4.061 19 C -0.078 4.078 20 C -0.133 4.133 21 C -0.096 4.096 22 C -0.117 4.117 23 C -0.201 4.201 24 C -0.150 4.150 25 C -0.146 4.146 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.012 0.988 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.123 0.877 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.197 2.152 7.538 10.642 hybrid contribution 0.527 0.006 -0.863 1.011 sum -6.670 2.159 6.675 9.680 Atomic orbital electron populations 1.21683 0.97596 0.99289 1.01093 1.21427 0.94231 1.00114 0.99642 1.22451 0.98203 0.93324 1.02104 1.20870 0.92398 0.84387 0.97694 1.44183 1.75257 1.10149 1.01207 1.19078 1.30948 1.02996 0.83529 0.91173 1.24606 0.98186 1.00276 0.96775 1.70163 1.27145 1.31648 1.24452 0.86565 0.80900 0.77593 0.83389 1.22016 1.22275 1.21092 1.20258 0.92021 0.91320 0.89445 0.93202 1.22181 0.98881 1.00734 0.99536 1.21145 0.91820 0.99256 1.00955 1.19720 0.95313 0.98346 0.92719 1.21181 0.93486 0.94888 0.98198 1.20898 0.94747 1.00724 0.96976 1.19613 0.95096 1.01463 0.93388 1.20453 0.91874 0.97368 1.02043 1.21739 0.98502 0.97919 1.01955 1.20682 0.95121 1.02874 0.96293 1.20857 0.94196 1.01977 0.97548 0.93751 0.93172 0.94765 0.92759 0.94912 0.95361 0.87496 0.89602 0.98837 0.94089 0.92645 0.94530 0.93365 0.93161 0.90917 0.84819 0.87393 0.91512 0.91900 0.92904 0.92675 0.93106 0.87742 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.12 -2.26 5.93 -26.73 -0.16 -2.42 16 3 C -0.12 -2.61 3.11 -26.73 -0.08 -2.69 16 4 C 0.17 3.97 4.82 -4.04 -0.02 3.95 16 5 N -0.59 -13.30 1.87 -165.65 -0.31 -13.61 16 6 C -0.24 -5.83 7.71 -15.06 -0.12 -5.94 16 7 H 0.07 1.75 6.82 -52.48 -0.36 1.39 16 8 C 0.00 -0.03 4.90 -17.43 -0.09 -0.12 16 9 N -0.89 -23.02 8.63 55.49 0.48 -22.54 16 10 Si 0.88 20.94 29.62 -169.99 -5.04 15.90 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.18 3.47 2.74 -67.92 -0.19 3.29 16 15 H 0.05 0.98 7.88 -51.93 -0.41 0.57 16 16 C -0.15 -2.74 9.16 37.16 0.34 -2.40 16 17 C -0.09 -1.68 4.75 -27.88 -0.13 -1.81 16 18 C -0.06 -1.12 3.59 -104.63 -0.38 -1.50 16 19 C -0.06 -1.17 6.28 -39.58 -0.25 -1.42 16 20 C -0.12 -2.06 8.74 -39.58 -0.35 -2.41 16 21 C -0.10 -1.52 5.13 -104.62 -0.54 -2.05 16 22 C -0.08 -1.05 6.06 -27.88 -0.17 -1.22 16 23 C -0.14 -1.64 9.90 37.16 0.37 -1.28 16 24 C -0.13 -2.07 9.70 -39.58 -0.38 -2.46 16 25 C -0.13 -2.13 9.28 -39.58 -0.37 -2.50 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.61 5.69 -51.93 -0.30 0.31 16 32 H 0.11 2.54 4.69 -51.93 -0.24 2.29 16 33 H 0.09 2.23 5.83 -51.93 -0.30 1.93 16 34 H -0.01 -0.15 8.05 -51.93 -0.42 -0.57 16 35 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.05 1.03 7.12 -51.93 -0.37 0.66 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 40 H 0.07 1.43 7.22 -51.93 -0.38 1.05 16 41 H 0.13 3.04 7.39 -52.49 -0.39 2.65 16 42 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 44 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 49 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -24.94 372.01 -10.44 -35.38 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -9.05 Total: 4.24 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -2.13 Total: -24.98 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.17 Total: -36.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.04 Total: 15.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -24.94 -10.44 -35.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173244840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.227 kcal (2) G-P(sol) polarization free energy of solvation -24.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds