Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47313 * 179.97438 * 4 3 2 6 6 C 1.36931 * 120.00175 * 263.77767 * 5 4 3 7 7 H 1.08005 * 119.99931 * 188.23436 * 6 5 4 8 8 C 1.38808 * 120.00101 * 8.23009 * 6 5 4 9 9 N 1.31621 * 120.00183 * 25.23174 * 8 6 5 10 10 Si 1.86806 * 120.00007 * 205.23239 * 8 6 5 11 11 H 1.48501 * 109.47013 * 84.98935 * 10 8 6 12 12 H 1.48500 * 109.47251 * 204.98836 * 10 8 6 13 13 H 1.48497 * 109.47115 * 324.98822 * 10 8 6 14 14 C 1.46506 * 119.99469 * 83.77364 * 5 4 3 15 15 H 1.08997 * 109.47541 * 0.02562 * 14 5 4 16 16 C 1.53000 * 109.46883 * 120.00519 * 14 5 4 17 17 C 1.53007 * 109.46775 * 240.00013 * 14 5 4 18 18 C 1.50693 * 109.47204 * 65.00544 * 17 14 5 19 19 C 1.38234 * 120.00026 * 269.72634 * 18 17 14 20 20 C 1.38236 * 120.00461 * 179.76836 * 19 18 17 21 21 C 1.38246 * 119.99424 * 0.49903 * 20 19 18 22 22 C 1.50700 * 119.99697 * 179.72797 * 21 20 19 23 23 C 1.53008 * 109.46853 * 270.02437 * 22 21 20 24 24 C 1.38236 * 120.00011 * 359.75415 * 21 20 19 25 25 C 1.38231 * 119.99894 * 359.97438 * 24 21 20 26 26 H 1.08998 * 109.46965 * 300.00316 * 1 2 3 27 27 H 1.08997 * 109.47248 * 60.00396 * 1 2 3 28 28 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46965 * 239.99684 * 2 1 3 30 30 H 1.09004 * 109.46730 * 119.99989 * 2 1 3 31 31 H 1.08998 * 109.47464 * 59.99989 * 3 2 1 32 32 H 1.09004 * 109.47315 * 299.99631 * 3 2 1 33 33 H 1.09002 * 109.47425 * 59.99844 * 4 3 2 34 34 H 1.08997 * 109.47248 * 299.99604 * 4 3 2 35 35 H 0.96995 * 119.99805 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47444 * 59.99436 * 16 14 5 37 37 H 1.08994 * 109.47220 * 179.97438 * 16 14 5 38 38 H 1.09002 * 109.46976 * 299.99946 * 16 14 5 39 39 H 1.08998 * 109.46663 * 185.00693 * 17 14 5 40 40 H 1.08994 * 109.47295 * 305.00071 * 17 14 5 41 41 H 1.08001 * 120.00039 * 359.97438 * 19 18 17 42 42 H 1.07992 * 120.00255 * 180.22725 * 20 19 18 43 43 H 1.08994 * 109.47137 * 30.01906 * 22 21 20 44 44 H 1.09001 * 109.46747 * 150.02653 * 22 21 20 45 45 H 1.09005 * 109.46526 * 300.00091 * 23 22 21 46 46 H 1.09001 * 109.47174 * 59.99753 * 23 22 21 47 47 H 1.08997 * 109.46909 * 180.02562 * 23 22 21 48 48 H 1.08000 * 119.99818 * 179.97438 * 24 21 20 49 49 H 1.08002 * 119.99703 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4083 3.4256 -1.1790 7 1 4.8916 4.3915 -1.1696 8 6 4.1420 2.7945 -2.3863 9 7 3.1630 1.9186 -2.4692 10 14 5.1730 3.1884 -3.8935 11 1 6.3983 2.3494 -3.8881 12 1 4.3849 2.9056 -5.1200 13 1 5.5553 4.6231 -3.8706 14 6 4.1723 3.5608 1.2610 15 1 3.8515 2.9233 2.0849 16 6 5.6279 3.9792 1.4774 17 6 3.2863 4.8070 1.2050 18 6 1.8405 4.3919 1.1151 19 6 1.2502 4.2062 -0.1210 20 6 -0.0747 3.8207 -0.2034 21 6 -0.8124 3.6309 0.9503 22 6 -2.2585 3.2167 0.8604 23 6 -3.1436 4.4635 0.8044 24 6 -0.2235 3.8217 2.1864 25 6 1.1030 4.2017 2.2687 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 2.9772 1.4774 -3.3128 36 1 5.9491 4.6166 0.6536 37 1 5.7127 4.5280 2.4153 38 1 6.2591 3.0914 1.5172 39 1 3.4384 5.4016 2.1057 40 1 3.5490 5.4005 0.3293 41 1 1.8252 4.3590 -1.0224 42 1 -0.5348 3.6721 -1.1691 43 1 -2.4108 2.6223 -0.0404 44 1 -2.5216 2.6233 1.7361 45 1 -2.9912 5.0579 1.7054 46 1 -2.8805 5.0569 -0.0712 47 1 -4.1896 4.1639 0.7399 48 1 -0.7999 3.6739 3.0877 49 1 1.5628 4.3512 3.2345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173244840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = 14.585902 kcal Electronic energy + Delta-G solvation = -25190.862177 eV Core-core repulsion = 22117.316377 eV Total energy + Delta-G solvation = -3073.545801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.49783 -38.37172 -35.89657 -34.92007 -33.90221 -31.71031 -31.49444 -30.50840 -28.94706 -27.02103 -25.85780 -24.02397 -23.38191 -23.16695 -21.74982 -21.18742 -20.96228 -18.02794 -17.09625 -16.80813 -16.24757 -15.88765 -15.76084 -15.47697 -15.12216 -14.88066 -14.45103 -14.38852 -14.13775 -13.98291 -13.74226 -13.50977 -13.36087 -13.18907 -13.16403 -12.70442 -12.67365 -12.51271 -12.35095 -12.26807 -12.15791 -11.94345 -11.82636 -11.72677 -11.57600 -11.42011 -11.30942 -11.27748 -11.07210 -10.84645 -10.11871 -9.42874 -9.04276 -8.55257 -7.63390 -4.90282 0.74524 0.84774 1.48307 1.54282 1.56557 2.62730 3.14520 3.43623 3.72618 4.04334 4.12973 4.24755 4.37036 4.40232 4.41360 4.49174 4.53727 4.62224 4.65865 4.73384 4.75411 4.82488 4.86883 4.90157 4.93750 5.03525 5.11719 5.13402 5.15470 5.17737 5.20670 5.25888 5.32279 5.36971 5.42865 5.47080 5.51056 5.59183 5.60017 5.63331 5.74322 5.81007 5.84358 6.00788 6.06960 6.17836 6.45710 6.48572 6.54093 7.39918 8.12731 8.54186 9.36273 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.006530 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.234949 B = 4286.598117 C = 4780.188610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 C -0.101 4.101 4 C 0.174 3.826 5 N -0.595 5.595 6 C -0.224 4.224 7 H 0.065 0.935 8 C -0.044 4.044 9 N -0.899 5.899 10 Si 0.929 3.071 11 H -0.300 1.300 12 H -0.306 1.306 13 H -0.282 1.282 14 C 0.173 3.827 15 H 0.054 0.946 16 C -0.146 4.146 17 C -0.084 4.084 18 C -0.076 4.076 19 C -0.074 4.074 20 C -0.127 4.127 21 C -0.089 4.089 22 C -0.079 4.079 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.126 4.126 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.054 0.946 34 H -0.002 1.002 35 H 0.238 0.762 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.136 0.864 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 2.390 10.472 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.154 4.154 3 C -0.140 4.140 4 C 0.049 3.951 5 N -0.316 5.316 6 C -0.354 4.354 7 H 0.083 0.917 8 C -0.239 4.239 9 N -0.547 5.547 10 Si 0.761 3.239 11 H -0.228 1.228 12 H -0.233 1.233 13 H -0.208 1.208 14 C 0.066 3.934 15 H 0.072 0.928 16 C -0.205 4.205 17 C -0.123 4.123 18 C -0.076 4.076 19 C -0.092 4.092 20 C -0.146 4.146 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.197 4.197 24 C -0.147 4.147 25 C -0.144 4.144 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.017 0.983 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.153 0.847 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.542 2.320 10.339 13.610 hybrid contribution 0.935 -0.013 -1.665 1.910 sum -7.607 2.307 8.674 11.765 Atomic orbital electron populations 1.21568 0.95496 1.00729 1.00817 1.21400 0.96095 0.98589 0.99284 1.22143 0.96750 0.94313 1.00817 1.20746 0.93584 0.84559 0.96223 1.44269 1.75306 1.10165 1.01810 1.19117 1.29522 1.02410 0.84333 0.91711 1.25022 0.99247 1.01280 0.98338 1.70301 1.27952 1.32598 1.23862 0.85843 0.79414 0.77185 0.81416 1.22848 1.23331 1.20806 1.20456 0.93405 0.91668 0.87872 0.92784 1.22081 0.97203 1.00488 1.00714 1.21027 0.91618 0.98452 1.01224 1.19756 0.95554 0.99409 0.92910 1.20845 0.94095 0.97034 0.97263 1.20887 0.94401 1.01546 0.97727 1.19899 0.96389 0.99939 0.92670 1.20512 0.90143 0.98291 1.02732 1.21703 0.99321 0.97001 1.01691 1.21050 0.94977 1.01488 0.97206 1.21118 0.94583 1.01029 0.97689 0.93029 0.94343 0.92471 0.94551 0.93778 0.95330 0.89861 0.92818 0.98333 0.95204 0.94047 0.91162 0.94086 0.90238 0.93259 0.89130 0.88270 0.91869 0.90105 0.92411 0.93774 0.91052 0.84664 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.91 71.98 0.71 -3.49 16 2 C -0.12 -4.44 5.93 30.59 0.18 -4.26 16 3 C -0.10 -4.36 3.11 30.59 0.10 -4.27 16 4 C 0.17 8.20 4.82 86.38 0.42 8.62 16 5 N -0.59 -27.29 1.87 -678.01 -1.26 -28.56 16 6 C -0.22 -11.34 7.71 84.03 0.65 -10.70 16 7 H 0.07 3.32 6.82 -2.91 -0.02 3.30 16 8 C -0.04 -2.31 4.90 84.86 0.42 -1.90 16 9 N -0.90 -48.74 8.63 21.65 0.19 -48.56 16 10 Si 0.93 44.60 29.62 68.60 2.03 46.63 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 12 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 14 C 0.17 6.58 2.74 44.99 0.12 6.71 16 15 H 0.05 2.01 7.88 -2.39 -0.02 2.00 16 16 C -0.15 -4.96 9.16 71.98 0.66 -4.30 16 17 C -0.08 -2.98 4.75 29.85 0.14 -2.84 16 18 C -0.08 -2.75 3.59 -19.87 -0.07 -2.82 16 19 C -0.07 -2.99 6.28 22.27 0.14 -2.85 16 20 C -0.13 -4.59 8.74 22.27 0.19 -4.40 16 21 C -0.09 -2.64 5.13 -19.86 -0.10 -2.75 16 22 C -0.08 -1.86 6.06 29.85 0.18 -1.68 16 23 C -0.14 -2.81 9.90 71.98 0.71 -2.10 16 24 C -0.13 -3.63 9.70 22.27 0.22 -3.42 16 25 C -0.13 -3.85 9.28 22.27 0.21 -3.64 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.03 1.21 5.69 -2.39 -0.01 1.19 16 32 H 0.08 4.08 4.69 -2.38 -0.01 4.07 16 33 H 0.05 2.89 5.83 -2.39 -0.01 2.88 16 34 H 0.00 -0.07 8.05 -2.39 -0.02 -0.09 16 35 H 0.24 13.06 8.31 -92.71 -0.77 12.29 16 36 H 0.04 1.51 7.12 -2.39 -0.02 1.49 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 40 H 0.05 1.96 7.22 -2.39 -0.02 1.94 16 41 H 0.09 4.41 7.39 -2.91 -0.02 4.39 16 42 H 0.10 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 44 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 45 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 49 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -55.39 372.01 6.70 -48.69 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.88 Total: 21.88 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 4.87 Total: -40.08 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -1.08 Total: -77.11 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -55.39 6.70 -48.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173244840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.272 kcal (2) G-P(sol) polarization free energy of solvation -55.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds