Wall clock time and date at job start Tue Mar 31 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47469 * 2 1 4 4 C 1.38265 * 119.99993 * 265.25129 * 3 2 1 5 5 C 1.38214 * 119.99948 * 180.26824 * 4 3 2 6 6 C 1.38260 * 119.99881 * 359.75386 * 5 4 3 7 7 C 1.38218 * 120.00134 * 359.97155 * 6 5 4 8 8 C 1.38214 * 120.00018 * 84.99506 * 3 2 1 9 9 C 1.50699 * 120.00080 * 0.02562 * 8 3 2 10 10 N 1.46900 * 109.47104 * 79.72732 * 9 8 3 11 11 C 1.46893 * 111.00158 * 75.33789 * 10 9 8 12 12 C 1.50702 * 109.47046 * 64.04582 * 11 10 9 13 13 H 1.07995 * 119.99609 * 4.93058 * 12 11 10 14 14 C 1.37877 * 119.99785 * 184.93249 * 12 11 10 15 15 N 1.31521 * 119.99687 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00132 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47364 * 90.00218 * 16 14 12 18 18 H 1.48507 * 109.46826 * 209.99645 * 16 14 12 19 19 H 1.48499 * 109.47263 * 329.99384 * 16 14 12 20 20 C 1.46898 * 110.99906 * 199.29814 * 10 9 8 21 21 C 1.53003 * 109.47248 * 169.99698 * 20 10 9 22 22 C 1.52997 * 109.47172 * 179.97438 * 21 20 10 23 23 C 1.53006 * 109.46866 * 65.00387 * 22 21 20 24 24 C 1.52996 * 109.47233 * 184.99950 * 22 21 20 25 25 H 1.08996 * 109.47304 * 300.00064 * 1 2 3 26 26 H 1.09008 * 109.47126 * 60.00229 * 1 2 3 27 27 H 1.09005 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47506 * 239.99563 * 2 1 3 29 29 H 1.08999 * 109.47374 * 119.99939 * 2 1 3 30 30 H 1.07997 * 119.99872 * 0.04414 * 4 3 2 31 31 H 1.07992 * 119.99960 * 179.77294 * 5 4 3 32 32 H 1.07996 * 120.00043 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.99803 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.47002 * 319.72355 * 9 8 3 35 35 H 1.09000 * 109.46947 * 199.72408 * 9 8 3 36 36 H 1.09003 * 109.46914 * 184.04254 * 11 10 9 37 37 H 1.08997 * 109.47578 * 304.03962 * 11 10 9 38 38 H 0.97004 * 119.99508 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.46861 * 289.99292 * 20 10 9 40 40 H 1.08999 * 109.47320 * 49.99420 * 20 10 9 41 41 H 1.08995 * 109.47284 * 299.99836 * 21 20 10 42 42 H 1.09008 * 109.46620 * 59.99670 * 21 20 10 43 43 H 1.08998 * 109.47387 * 305.00612 * 22 21 20 44 44 H 1.08997 * 109.46768 * 299.99414 * 23 22 21 45 45 H 1.08992 * 109.47047 * 59.99520 * 23 22 21 46 46 H 1.08995 * 109.46705 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47129 * 60.00239 * 24 22 21 48 48 H 1.09002 * 109.47372 * 180.02562 * 24 22 21 49 49 H 1.08998 * 109.47475 * 300.00609 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3563 2.0395 -1.1933 5 6 2.8223 3.3407 -1.1928 6 6 2.9598 4.0253 0.0005 7 6 2.6305 3.4087 1.1929 8 6 2.1643 2.1071 1.1924 9 6 1.8063 1.4345 2.4926 10 7 2.9090 0.5586 2.9106 11 6 4.0289 1.3423 3.4485 12 6 3.5874 2.0556 4.7004 13 1 2.6021 1.8766 5.1048 14 6 4.4413 2.9366 5.3294 15 7 4.0558 3.5595 6.4217 16 14 6.1452 3.2466 4.6293 17 1 6.0872 4.3767 3.6677 18 1 7.0800 3.5834 5.7330 19 1 6.6230 2.0263 3.9310 20 6 2.4482 -0.4390 3.8855 21 6 3.5471 -1.4801 4.1081 22 6 3.0675 -2.5187 5.1240 23 6 1.8861 -3.2959 4.5396 24 6 4.2086 -3.4874 5.4405 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2486 1.5048 -2.1254 31 1 3.0788 3.8227 -2.1246 32 1 3.3243 5.0419 0.0009 33 1 2.7375 3.9437 2.1249 34 1 0.9020 0.8412 2.3577 35 1 1.6335 2.1914 3.2577 36 1 4.8589 0.6758 3.6835 37 1 4.3495 2.0741 2.7071 38 1 4.6564 4.1796 6.8640 39 1 2.2189 0.0548 4.8299 40 1 1.5528 -0.9313 3.5061 41 1 3.7765 -1.9738 3.1639 42 1 4.4426 -0.9876 4.4876 43 1 2.7543 -2.0150 6.0384 44 1 1.0731 -2.6058 4.3142 45 1 2.1993 -3.7995 3.6252 46 1 1.5441 -4.0355 5.2635 47 1 5.0503 -2.9338 5.8568 48 1 3.8668 -4.2277 6.1639 49 1 4.5218 -3.9912 4.5261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191367669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:27 Heat of formation + Delta-G solvation = -1.293842 kcal Electronic energy + Delta-G solvation = -24193.941146 eV Core-core repulsion = 21119.706748 eV Total energy + Delta-G solvation = -3074.234398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.37121 -37.38723 -35.36736 -33.85029 -32.38263 -31.17188 -29.13006 -28.57616 -27.39311 -26.91465 -24.58082 -23.39101 -22.89000 -21.39966 -20.38257 -19.48228 -19.19400 -16.95474 -15.94316 -15.45879 -15.18892 -14.85920 -14.58043 -14.25951 -13.94318 -13.51239 -13.48817 -13.30461 -13.07585 -12.68616 -12.59498 -12.44461 -12.18545 -11.98814 -11.83424 -11.54005 -11.46629 -11.26892 -11.07990 -11.05483 -10.84105 -10.68039 -10.49775 -10.36783 -10.24099 -10.20904 -10.10044 -9.87140 -9.67903 -9.49567 -8.58536 -8.34073 -8.13583 -7.15307 -6.10999 -4.09371 1.81002 1.85863 3.27009 3.35137 3.40231 4.16836 4.39730 4.94332 5.10640 5.21775 5.23448 5.25035 5.29569 5.37158 5.38948 5.44638 5.58026 5.63969 5.74539 5.81433 5.87327 5.90564 5.94045 5.99175 6.02425 6.06725 6.11753 6.14213 6.21247 6.28287 6.33964 6.39444 6.41917 6.48570 6.57024 6.59804 6.62110 6.72766 6.86231 6.89975 6.94462 6.98180 7.04446 7.16973 7.26383 7.49688 7.59554 8.07522 8.14453 8.44835 8.91839 9.53084 11.01773 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.007458 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.176597 B = 3753.327601 C = 6016.037281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.065 4.065 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.132 4.132 7 C -0.102 4.102 8 C -0.054 4.054 9 C 0.089 3.911 10 N -0.527 5.527 11 C 0.152 3.848 12 C -0.544 4.544 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.899 5.899 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.060 3.940 21 C -0.105 4.105 22 C -0.097 4.097 23 C -0.144 4.144 24 C -0.144 4.144 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -8.246 -10.701 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.066 4.066 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.120 4.120 8 C -0.055 4.055 9 C -0.038 4.038 10 N -0.250 5.250 11 C 0.025 3.975 12 C -0.583 4.583 13 H 0.093 0.907 14 C -0.128 4.128 15 N -0.538 5.538 16 Si 0.699 3.301 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.068 4.068 21 C -0.142 4.142 22 C -0.116 4.116 23 C -0.202 4.202 24 C -0.201 4.201 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.313 -8.385 -10.971 14.466 hybrid contribution 0.822 0.948 0.488 1.346 sum -3.491 -7.437 -10.483 13.319 Atomic orbital electron populations 1.21743 0.95572 1.01094 1.01761 1.20560 0.95283 0.93246 1.03374 1.19690 0.98704 0.95743 0.92436 1.20902 1.01525 0.95214 0.97150 1.20969 1.01168 0.95062 0.97565 1.21067 1.01420 0.99771 0.92747 1.21278 0.97456 0.95050 0.98226 1.19773 0.97656 0.93441 0.94609 1.20990 0.93564 0.96207 0.93082 1.62430 1.07943 1.15438 1.39175 1.20204 0.90373 0.92796 0.94107 1.21636 1.02757 1.24606 1.09277 0.90712 1.24914 0.98030 0.95299 0.94564 1.69928 1.36600 1.28418 1.18815 0.86898 0.84971 0.79342 0.78873 1.20171 1.21415 1.18897 1.22027 0.96275 0.92831 0.95713 1.21546 0.99346 0.95385 0.97961 1.21093 0.95210 0.96019 0.99274 1.21863 0.98332 0.99683 1.00289 1.21810 0.98575 0.98923 1.00815 0.92527 0.93198 0.92880 0.92108 0.89020 0.86996 0.87020 0.86810 0.85556 0.91773 0.92069 0.95371 0.95653 0.92771 0.93317 0.92923 0.92437 0.91344 0.91250 0.92537 0.93055 0.93550 0.92724 0.93354 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.75 37.15 0.36 -1.35 16 2 C -0.09 -1.19 5.40 -27.89 -0.15 -1.34 16 3 C -0.07 -1.03 5.13 -104.62 -0.54 -1.57 16 4 C -0.13 -1.89 9.68 -39.58 -0.38 -2.27 16 5 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 6 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 7 C -0.10 -1.87 8.81 -39.58 -0.35 -2.22 16 8 C -0.05 -0.97 4.91 -104.62 -0.51 -1.49 16 9 C 0.09 1.67 4.14 -4.98 -0.02 1.65 16 10 N -0.53 -10.42 3.94 -237.52 -0.94 -11.36 16 11 C 0.15 3.55 3.83 -4.98 -0.02 3.53 16 12 C -0.54 -14.51 7.84 -34.44 -0.27 -14.78 16 13 H 0.07 2.17 6.24 -52.49 -0.33 1.84 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 16 Si 0.87 21.42 27.37 -169.99 -4.65 16.77 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.26 -6.34 6.69 56.52 0.38 -5.96 16 20 C 0.06 1.08 4.49 -3.82 -0.02 1.07 16 21 C -0.10 -1.75 4.61 -26.73 -0.12 -1.87 16 22 C -0.10 -1.38 2.92 -90.62 -0.26 -1.65 16 23 C -0.14 -1.77 8.95 37.16 0.33 -1.44 16 24 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 25 H 0.06 0.71 6.72 -51.93 -0.35 0.36 16 26 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 29 H 0.09 1.38 6.59 -51.93 -0.34 1.04 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.13 2.51 8.04 -52.49 -0.42 2.09 16 34 H 0.06 1.08 5.46 -51.93 -0.28 0.79 16 35 H 0.06 1.32 6.39 -51.93 -0.33 0.99 16 36 H 0.03 0.68 5.87 -51.93 -0.31 0.38 16 37 H 0.03 0.62 5.98 -51.93 -0.31 0.31 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 1.03 6.20 -51.93 -0.32 0.71 16 40 H 0.05 0.85 6.26 -51.93 -0.32 0.52 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.31 6.56 -51.92 -0.34 0.97 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.70 6.57 -51.93 -0.34 0.36 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -28.57 372.05 -10.36 -38.93 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.65 Total: 4.15 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -2.50 Total: -28.03 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.16 Total: -37.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.65 Total: 16.77 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.57 -10.36 -38.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191367669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.639 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds