Wall clock time and date at job start Tue Mar 31 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47469 * 2 1 4 4 C 1.38265 * 119.99993 * 265.25129 * 3 2 1 5 5 C 1.38214 * 119.99948 * 180.26824 * 4 3 2 6 6 C 1.38260 * 119.99881 * 359.75386 * 5 4 3 7 7 C 1.38218 * 120.00134 * 359.97155 * 6 5 4 8 8 C 1.38214 * 120.00018 * 84.99506 * 3 2 1 9 9 C 1.50699 * 120.00080 * 0.02562 * 8 3 2 10 10 N 1.46900 * 109.47104 * 79.72732 * 9 8 3 11 11 C 1.46893 * 111.00158 * 75.33789 * 10 9 8 12 12 C 1.50702 * 109.47046 * 64.04582 * 11 10 9 13 13 H 1.07995 * 119.99609 * 4.93058 * 12 11 10 14 14 C 1.37877 * 119.99785 * 184.93249 * 12 11 10 15 15 N 1.31521 * 119.99687 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00132 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47364 * 90.00218 * 16 14 12 18 18 H 1.48507 * 109.46826 * 209.99645 * 16 14 12 19 19 H 1.48499 * 109.47263 * 329.99384 * 16 14 12 20 20 C 1.46898 * 110.99906 * 199.29814 * 10 9 8 21 21 C 1.53003 * 109.47248 * 169.99698 * 20 10 9 22 22 C 1.52997 * 109.47172 * 179.97438 * 21 20 10 23 23 C 1.53006 * 109.46866 * 65.00387 * 22 21 20 24 24 C 1.52996 * 109.47233 * 184.99950 * 22 21 20 25 25 H 1.08996 * 109.47304 * 300.00064 * 1 2 3 26 26 H 1.09008 * 109.47126 * 60.00229 * 1 2 3 27 27 H 1.09005 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47506 * 239.99563 * 2 1 3 29 29 H 1.08999 * 109.47374 * 119.99939 * 2 1 3 30 30 H 1.07997 * 119.99872 * 0.04414 * 4 3 2 31 31 H 1.07992 * 119.99960 * 179.77294 * 5 4 3 32 32 H 1.07996 * 120.00043 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.99803 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.47002 * 319.72355 * 9 8 3 35 35 H 1.09000 * 109.46947 * 199.72408 * 9 8 3 36 36 H 1.09003 * 109.46914 * 184.04254 * 11 10 9 37 37 H 1.08997 * 109.47578 * 304.03962 * 11 10 9 38 38 H 0.97004 * 119.99508 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.46861 * 289.99292 * 20 10 9 40 40 H 1.08999 * 109.47320 * 49.99420 * 20 10 9 41 41 H 1.08995 * 109.47284 * 299.99836 * 21 20 10 42 42 H 1.09008 * 109.46620 * 59.99670 * 21 20 10 43 43 H 1.08998 * 109.47387 * 305.00612 * 22 21 20 44 44 H 1.08997 * 109.46768 * 299.99414 * 23 22 21 45 45 H 1.08992 * 109.47047 * 59.99520 * 23 22 21 46 46 H 1.08995 * 109.46705 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47129 * 60.00239 * 24 22 21 48 48 H 1.09002 * 109.47372 * 180.02562 * 24 22 21 49 49 H 1.08998 * 109.47475 * 300.00609 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3563 2.0395 -1.1933 5 6 2.8223 3.3407 -1.1928 6 6 2.9598 4.0253 0.0005 7 6 2.6305 3.4087 1.1929 8 6 2.1643 2.1071 1.1924 9 6 1.8063 1.4345 2.4926 10 7 2.9090 0.5586 2.9106 11 6 4.0289 1.3423 3.4485 12 6 3.5874 2.0556 4.7004 13 1 2.6021 1.8766 5.1048 14 6 4.4413 2.9366 5.3294 15 7 4.0558 3.5595 6.4217 16 14 6.1452 3.2466 4.6293 17 1 6.0872 4.3767 3.6677 18 1 7.0800 3.5834 5.7330 19 1 6.6230 2.0263 3.9310 20 6 2.4482 -0.4390 3.8855 21 6 3.5471 -1.4801 4.1081 22 6 3.0675 -2.5187 5.1240 23 6 1.8861 -3.2959 4.5396 24 6 4.2086 -3.4874 5.4405 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2486 1.5048 -2.1254 31 1 3.0788 3.8227 -2.1246 32 1 3.3243 5.0419 0.0009 33 1 2.7375 3.9437 2.1249 34 1 0.9020 0.8412 2.3577 35 1 1.6335 2.1914 3.2577 36 1 4.8589 0.6758 3.6835 37 1 4.3495 2.0741 2.7071 38 1 4.6564 4.1796 6.8640 39 1 2.2189 0.0548 4.8299 40 1 1.5528 -0.9313 3.5061 41 1 3.7765 -1.9738 3.1639 42 1 4.4426 -0.9876 4.4876 43 1 2.7543 -2.0150 6.0384 44 1 1.0731 -2.6058 4.3142 45 1 2.1993 -3.7995 3.6252 46 1 1.5441 -4.0355 5.2635 47 1 5.0503 -2.9338 5.8568 48 1 3.8668 -4.2277 6.1639 49 1 4.5218 -3.9912 4.5261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191367669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:27 Heat of formation + Delta-G solvation = -15.204505 kcal Electronic energy + Delta-G solvation = -24194.544358 eV Core-core repulsion = 21119.706748 eV Total energy + Delta-G solvation = -3074.837610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69098 -38.85458 -36.71125 -35.04492 -34.44034 -32.51281 -30.33527 -30.23005 -28.97201 -27.93871 -26.10203 -24.81126 -24.35223 -22.68533 -21.71235 -20.85167 -20.68900 -19.01721 -17.23755 -16.84438 -16.68712 -16.39829 -15.96693 -15.87169 -15.46379 -14.84599 -14.63857 -14.50873 -14.41463 -14.21673 -13.97232 -13.84077 -13.52747 -13.25263 -13.08189 -12.95550 -12.86145 -12.64425 -12.54275 -12.49112 -12.20697 -12.15127 -11.94128 -11.89494 -11.72214 -11.55354 -11.46034 -11.39057 -11.22453 -11.16205 -10.77938 -9.62075 -9.38750 -8.91808 -8.32503 -6.34080 0.56152 0.59609 1.28619 1.30330 1.41553 2.29980 2.88450 3.03497 3.45145 3.96975 4.05072 4.05687 4.10049 4.16521 4.20080 4.27432 4.39917 4.46882 4.51927 4.66705 4.68043 4.73240 4.77763 4.82200 4.83364 4.85837 4.94237 4.97530 5.03065 5.06087 5.10551 5.14456 5.18086 5.22334 5.26754 5.28424 5.29979 5.37158 5.41648 5.49182 5.54746 5.58194 5.63705 5.69148 5.74636 5.96085 6.12516 6.25452 6.37346 6.47605 6.71941 7.31517 8.83682 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.007458 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.176597 B = 3753.327601 C = 6016.037281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.068 4.068 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.140 4.140 7 C -0.130 4.130 8 C -0.077 4.077 9 C 0.098 3.902 10 N -0.516 5.516 11 C 0.167 3.833 12 C -0.532 4.532 13 H 0.038 0.962 14 C 0.017 3.983 15 N -0.946 5.946 16 Si 0.933 3.067 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.251 1.251 20 C 0.063 3.937 21 C -0.097 4.097 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.140 4.140 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.010 0.990 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.065 0.935 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -10.310 -14.182 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.077 4.077 9 C -0.029 4.029 10 N -0.238 5.238 11 C 0.039 3.961 12 C -0.571 4.571 13 H 0.056 0.944 14 C -0.181 4.181 15 N -0.586 5.586 16 Si 0.757 3.243 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.175 1.175 20 C -0.064 4.064 21 C -0.135 4.135 22 C -0.116 4.116 23 C -0.196 4.196 24 C -0.198 4.198 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.987 -10.464 -14.463 18.291 hybrid contribution 0.598 1.586 1.543 2.292 sum -3.389 -8.878 -12.920 16.039 Atomic orbital electron populations 1.21709 0.94229 1.02292 1.01508 1.20583 0.96377 0.91671 1.03623 1.19964 0.98159 0.96799 0.91950 1.21318 0.99910 0.95308 0.97833 1.21372 0.99479 0.95062 0.98041 1.21268 1.01346 1.00623 0.92552 1.21173 0.99877 0.95742 0.98071 1.19718 0.99502 0.93591 0.94906 1.20900 0.94003 0.95197 0.92823 1.62476 1.07637 1.15012 1.38675 1.19933 0.91561 0.92443 0.92154 1.21804 1.01051 1.24203 1.10075 0.94402 1.25729 1.02113 0.95320 0.94908 1.70066 1.38228 1.29763 1.20578 0.85917 0.80247 0.79747 0.78376 1.19497 1.20915 1.17520 1.22072 0.98079 0.92663 0.93634 1.21484 0.97387 0.95381 0.99235 1.21073 0.96894 0.95883 0.97718 1.21809 0.96966 0.99639 1.01169 1.21778 0.97407 0.98706 1.01878 0.94019 0.92222 0.90963 0.89941 0.90632 0.83570 0.83527 0.85452 0.88984 0.89771 0.96310 0.95692 0.96297 0.92711 0.97184 0.90213 0.90978 0.94428 0.93350 0.93006 0.91711 0.91956 0.94013 0.91617 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.75 71.98 0.70 -2.21 16 2 C -0.09 -2.08 5.40 29.84 0.16 -1.92 16 3 C -0.07 -2.02 5.13 -19.86 -0.10 -2.12 16 4 C -0.13 -3.19 9.68 22.27 0.22 -2.97 16 5 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 6 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16 7 C -0.13 -4.95 8.81 22.27 0.20 -4.75 16 8 C -0.08 -2.78 4.91 -19.87 -0.10 -2.88 16 9 C 0.10 3.86 4.14 85.56 0.35 4.21 16 10 N -0.52 -20.95 3.94 -905.39 -3.57 -24.52 16 11 C 0.17 8.07 3.83 85.56 0.33 8.39 16 12 C -0.53 -30.21 7.84 25.60 0.20 -30.01 16 13 H 0.04 2.39 6.24 -2.91 -0.02 2.37 16 14 C 0.02 1.01 5.47 84.65 0.46 1.47 16 15 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 16 Si 0.93 45.36 27.37 68.60 1.88 47.24 16 17 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.25 -11.61 6.69 99.48 0.67 -10.94 16 20 C 0.06 2.37 4.49 86.30 0.39 2.76 16 21 C -0.10 -3.26 4.61 30.59 0.14 -3.11 16 22 C -0.10 -2.70 2.92 -10.79 -0.03 -2.74 16 23 C -0.14 -3.10 8.95 71.98 0.64 -2.46 16 24 C -0.14 -3.38 9.19 71.98 0.66 -2.72 16 25 H 0.04 0.98 6.72 -2.39 -0.02 0.96 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.08 1.67 8.05 -2.39 -0.02 1.65 16 29 H 0.08 2.09 6.59 -2.39 -0.02 2.08 16 30 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.09 4.02 8.04 -2.91 -0.02 4.00 16 34 H 0.08 2.89 5.46 -2.39 -0.01 2.88 16 35 H 0.02 0.88 6.39 -2.39 -0.02 0.87 16 36 H 0.03 1.24 5.87 -2.39 -0.01 1.22 16 37 H 0.02 0.95 5.98 -2.39 -0.01 0.93 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.01 0.45 6.20 -2.38 -0.01 0.43 16 40 H 0.08 2.55 6.26 -2.39 -0.01 2.53 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.04 1.48 6.56 -2.38 -0.02 1.46 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.19 6.57 -2.39 -0.02 1.18 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -65.83 372.05 4.13 -61.69 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.85 Total: 22.74 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 4.67 Total: -48.09 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.27 Total: -83.59 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -65.83 4.13 -61.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191367669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.490 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds