Wall clock time and date at job start Tue Mar 31 2020 06:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38618 * 120.77862 * 2 1 4 4 C 1.38350 * 119.14654 * 179.72749 * 3 2 1 5 5 Cl 1.73601 * 119.63119 * 180.24949 * 4 3 2 6 6 N 1.31977 * 120.73528 * 0.55578 * 4 3 2 7 7 C 1.31883 * 121.70830 * 359.71430 * 6 4 3 8 8 C 1.38190 * 120.77384 * 0.02562 * 7 6 4 9 9 S 1.76203 * 120.39855 * 180.02562 * 8 7 6 10 10 O 1.42103 * 106.40334 * 228.51578 * 9 8 7 11 11 O 1.42100 * 106.40574 * 1.43661 * 9 8 7 12 12 N 1.65600 * 107.21867 * 114.97705 * 9 8 7 13 13 C 1.46494 * 120.00171 * 270.00356 * 12 9 8 14 14 C 1.36940 * 120.00044 * 89.99829 * 12 9 8 15 15 H 1.07995 * 119.99835 * 22.79487 * 14 12 9 16 16 C 1.38810 * 120.00248 * 202.79892 * 14 12 9 17 17 N 1.31622 * 120.00030 * 10.92537 * 16 14 12 18 18 Si 1.86799 * 120.00315 * 190.92865 * 16 14 12 19 19 H 1.48498 * 109.47119 * 89.99528 * 18 16 14 20 20 H 1.48505 * 109.47218 * 209.99935 * 18 16 14 21 21 H 1.48503 * 109.46833 * 329.99680 * 18 16 14 22 22 H 1.09002 * 109.46872 * 269.72015 * 1 2 3 23 23 H 1.08996 * 109.46344 * 149.72291 * 1 2 3 24 24 H 1.08997 * 109.47028 * 29.72388 * 1 2 3 25 25 H 1.07995 * 120.42568 * 0.02562 * 3 2 1 26 26 H 1.07990 * 119.61067 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47834 * 94.24916 * 13 12 9 28 28 H 1.09003 * 109.47446 * 214.24858 * 13 12 9 29 29 H 1.09002 * 109.46853 * 334.24464 * 13 12 9 30 30 H 0.96996 * 120.00676 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1909 0.0000 4 6 3.5993 1.1515 0.0057 5 17 4.5002 2.6355 0.0124 6 7 4.2413 -0.0016 0.0002 7 6 3.5981 -1.1529 -0.0054 8 6 2.2167 -1.1912 -0.0061 9 16 1.3676 -2.7351 -0.0129 10 8 0.3834 -2.6473 -1.0342 11 8 2.3682 -3.7436 0.0175 12 7 0.5455 -2.8487 1.4201 13 6 1.1893 -3.4554 2.5878 14 6 -0.7361 -2.3755 1.5137 15 1 -1.3402 -2.2733 0.6244 16 6 -1.2588 -2.0271 2.7515 17 7 -0.4678 -1.9446 3.8003 18 14 -3.0848 -1.6755 2.9291 19 1 -3.8015 -2.9338 3.2580 20 1 -3.2951 -0.6870 4.0172 21 1 -3.6094 -1.1261 1.6530 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3632 -0.8875 -0.5181 24 1 -0.3633 0.8924 -0.5095 25 1 1.6962 2.1373 0.0004 26 1 4.1576 -2.0766 -0.0103 27 1 1.6454 -2.6754 3.1975 28 1 0.4437 -3.9883 3.1780 29 1 1.9579 -4.1539 2.2569 30 1 -0.8328 -1.7009 4.6653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192344185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:10 Heat of formation + Delta-G solvation = -53.122468 kcal Electronic energy + Delta-G solvation = -19593.330803 eV Core-core repulsion = 16348.410680 eV Total energy + Delta-G solvation = -3244.920124 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30139 -37.97551 -37.83755 -37.55592 -36.38594 -35.00237 -33.35883 -32.26280 -29.12184 -28.10620 -25.44834 -24.94881 -23.42534 -20.35168 -19.13862 -18.69789 -18.25584 -17.76770 -17.70433 -16.38451 -16.16753 -15.73583 -15.62119 -15.04510 -14.71889 -14.21784 -14.00431 -13.86200 -13.63861 -13.42445 -13.17992 -12.90759 -12.80721 -12.64579 -12.54467 -12.44099 -12.20859 -12.11696 -11.83848 -11.78078 -11.08788 -10.77100 -10.68469 -10.31800 -9.95096 -8.38519 -5.92187 -0.55514 -0.10469 0.00997 0.55898 1.56535 1.60106 1.68390 2.19885 2.34736 2.65733 2.93976 3.16359 3.30822 3.64420 3.67337 3.88467 4.16199 4.31057 4.51749 4.59787 4.66780 4.88071 4.98973 5.05264 5.25705 5.30264 5.38091 5.50783 5.59409 6.40194 6.42626 6.77482 7.23816 8.56663 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.006749 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.619301 B = 4147.592048 C = 4837.687236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.068 3.932 3 C -0.179 4.179 4 C 0.194 3.806 5 Cl -0.015 7.015 6 N -0.519 5.519 7 C 0.187 3.813 8 C -0.732 4.732 9 S 2.535 3.465 10 O -0.999 6.999 11 O -1.019 7.019 12 N -0.807 5.807 13 C 0.128 3.872 14 C -0.253 4.253 15 H 0.121 0.879 16 C 0.006 3.994 17 N -0.847 5.847 18 Si 0.980 3.020 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.251 1.251 22 H 0.103 0.897 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.178 0.822 26 H 0.179 0.821 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 6.631 -1.090 6.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 C -0.201 4.201 4 C 0.030 3.970 5 Cl 0.013 6.987 6 N -0.231 5.231 7 C 0.029 3.971 8 C -0.812 4.812 9 S 2.634 3.366 10 O -0.989 6.989 11 O -1.008 7.008 12 N -0.631 5.631 13 C -0.018 4.018 14 C -0.402 4.402 15 H 0.138 0.862 16 C -0.206 4.206 17 N -0.487 5.487 18 Si 0.802 3.198 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.174 1.174 22 H 0.121 0.879 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.196 0.804 26 H 0.196 0.804 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.213 6.211 -1.768 6.570 hybrid contribution -0.717 0.937 0.513 1.286 sum 0.496 7.148 -1.255 7.274 Atomic orbital electron populations 1.21811 0.87714 1.06576 1.05653 1.20255 0.98038 0.90656 0.85146 1.22089 0.92256 1.00807 1.04900 1.22076 0.89696 0.88923 0.96272 1.98384 1.76170 1.27935 1.96173 1.67066 1.41764 0.98076 1.16229 1.22529 0.90381 0.95425 0.88726 1.33252 1.07201 1.26135 1.14597 1.11913 0.72054 0.75327 0.77305 1.93273 1.58917 1.87290 1.59414 1.93281 1.60946 1.58659 1.87961 1.54185 1.17549 1.62115 1.29267 1.21286 0.96839 0.96452 0.87243 1.20306 0.84813 1.38600 0.96484 0.86190 1.26436 1.04255 0.94725 0.95150 1.70163 1.37428 1.39807 1.01260 0.85086 0.76819 0.78588 0.79284 1.19754 1.20248 1.17403 0.87863 0.88448 0.87817 0.80428 0.80432 0.93617 0.90782 0.92874 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.47 8.27 71.24 0.59 -4.88 16 2 C 0.07 2.50 5.91 -19.67 -0.12 2.38 16 3 C -0.18 -5.73 9.58 22.39 0.21 -5.51 16 4 C 0.19 6.54 7.27 84.70 0.62 7.15 16 5 Cl -0.02 -0.41 29.11 -2.72 -0.08 -0.49 16 6 N -0.52 -19.64 10.34 -186.70 -1.93 -21.57 16 7 C 0.19 7.38 10.71 84.67 0.91 8.28 16 8 C -0.73 -29.92 5.92 22.36 0.13 -29.79 16 9 S 2.53 112.90 5.18 -56.49 -0.29 112.60 16 10 O -1.00 -47.48 14.42 -128.00 -1.85 -49.33 16 11 O -1.02 -48.33 15.56 -128.00 -1.99 -50.32 16 12 N -0.81 -35.71 3.31 -364.91 -1.21 -36.92 16 13 C 0.13 5.40 8.92 127.77 1.14 6.54 16 14 C -0.25 -10.94 6.41 84.03 0.54 -10.40 16 15 H 0.12 5.11 6.34 -2.91 -0.02 5.09 16 16 C 0.01 0.26 5.03 84.86 0.43 0.68 16 17 N -0.85 -36.74 10.59 21.65 0.23 -36.51 16 18 Si 0.98 32.79 29.57 68.60 2.03 34.82 16 19 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 20 H -0.28 -9.18 7.11 99.48 0.71 -8.47 16 21 H -0.25 -7.97 7.11 99.48 0.71 -7.27 16 22 H 0.10 3.61 6.78 -2.39 -0.02 3.60 16 23 H 0.10 3.73 3.87 -2.39 -0.01 3.72 16 24 H 0.10 2.69 8.10 -2.39 -0.02 2.67 16 25 H 0.18 4.28 8.06 -2.91 -0.02 4.25 16 26 H 0.18 6.60 7.34 -2.92 -0.02 6.58 16 27 H 0.05 1.97 7.41 -2.39 -0.02 1.95 16 28 H 0.07 3.12 7.21 -2.39 -0.02 3.10 16 29 H 0.05 2.13 6.93 -2.39 -0.02 2.11 16 30 H 0.28 11.47 8.31 -92.71 -0.77 10.70 16 Total: -1.00 -54.23 277.77 0.55 -53.68 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.19 Total: 19.57 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.45 Total: -25.54 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -2.91 Total: -95.00 kcal Atomic # 8 Polarization: -95.81 SS G_CDS: -3.84 Total: -99.65 kcal Atomic # 14 Polarization: 32.79 SS G_CDS: 2.03 Total: 34.82 kcal Atomic # 16 Polarization: 112.90 SS G_CDS: -0.29 Total: 112.60 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -54.23 0.55 -53.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192344185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.562 kcal (2) G-P(sol) polarization free energy of solvation -54.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds