Wall clock time and date at job start Tue Mar 31 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46627 * 2 1 4 4 N 1.46505 * 109.46726 * 119.99386 * 2 1 3 5 5 S 1.65598 * 120.00136 * 265.00005 * 4 2 1 6 6 O 1.42096 * 106.40244 * 178.53975 * 5 4 2 7 7 O 1.42100 * 106.40133 * 311.46411 * 5 4 2 8 8 C 1.76200 * 107.21540 * 65.00278 * 5 4 2 9 9 H 1.07996 * 120.00366 * 359.97438 * 8 5 4 10 10 C 1.37883 * 119.99774 * 179.97438 * 8 5 4 11 11 N 1.31507 * 120.00188 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99644 * 180.02562 * 10 8 5 13 13 H 1.48493 * 109.47516 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47128 * 120.00351 * 12 10 8 15 15 H 1.48507 * 109.46968 * 239.99826 * 12 10 8 16 16 C 1.50697 * 109.47464 * 239.99371 * 2 1 3 17 17 C 1.38233 * 120.41358 * 280.02352 * 16 2 1 18 18 N 1.31846 * 120.79018 * 179.97438 * 17 16 2 19 19 C 1.31876 * 121.74299 * 359.97438 * 18 17 16 20 20 C 1.38302 * 120.74357 * 359.74728 * 19 18 17 21 21 Cl 1.73608 * 120.43408 * 180.28083 * 20 19 18 22 22 C 1.38613 * 120.41016 * 100.00219 * 16 2 1 23 23 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47326 * 300.00360 * 1 2 3 25 25 H 1.09009 * 109.46793 * 60.00871 * 1 2 3 26 26 H 0.97003 * 119.99898 * 85.00456 * 4 2 1 27 27 H 0.97003 * 120.00164 * 179.97438 * 11 10 8 28 28 H 1.07993 * 119.60252 * 0.02562 * 17 16 2 29 29 H 1.08004 * 119.63112 * 180.02562 * 19 18 17 30 30 H 1.08002 * 120.79267 * 359.97438 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 2.4121 0.1773 2.5506 6 8 2.8122 -0.7695 3.5317 7 8 3.2435 1.2445 2.1156 8 6 0.9273 0.9149 3.1473 9 1 -0.0047 0.7495 2.6274 10 6 0.9554 1.7034 4.2781 11 7 2.0904 1.9053 4.9110 12 14 -0.6189 2.4847 4.9112 13 1 -1.7499 2.1060 4.0267 14 1 -0.8879 2.0077 6.2915 15 1 -0.4700 3.9623 4.9183 16 6 2.0324 -0.7105 -1.2303 17 6 2.0701 -2.0916 -1.2745 18 7 2.5078 -2.7209 -2.3473 19 6 2.9239 -2.0666 -3.4140 20 6 2.9101 -0.6840 -3.4454 21 17 3.4529 0.1690 -4.8567 22 6 2.4621 0.0128 -2.3320 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 2.1109 -1.6561 1.1951 27 1 2.1102 2.4602 5.7063 28 1 1.7363 -2.6620 -0.4204 29 1 3.2751 -2.6167 -4.2745 30 1 2.4432 1.0926 -2.3260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193005271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:20 Heat of formation + Delta-G solvation = -95.650353 kcal Electronic energy + Delta-G solvation = -18690.566794 eV Core-core repulsion = 15443.802523 eV Total energy + Delta-G solvation = -3246.764271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47630 -37.91052 -37.50647 -37.15653 -36.13178 -35.15935 -33.42413 -31.86019 -30.14462 -28.19463 -25.34961 -24.83985 -22.35250 -21.03280 -19.48413 -18.71391 -18.19486 -17.57180 -17.28998 -16.75599 -16.21339 -15.92450 -15.51819 -15.40354 -14.73627 -14.30861 -14.23514 -13.97249 -13.80826 -13.35980 -13.05984 -13.00639 -12.83619 -12.51894 -12.50342 -12.38057 -12.27673 -12.19301 -12.05385 -11.23606 -11.05145 -10.73077 -10.63280 -10.32021 -9.92773 -8.72387 -7.44092 -0.18237 0.00730 0.37921 0.95208 1.36823 1.38798 1.55393 2.23409 2.54582 2.62550 2.95761 3.28095 3.55654 3.69487 3.71525 3.82493 4.02137 4.20966 4.32693 4.42490 4.51337 4.72472 4.82126 4.90809 4.96332 5.24195 5.29543 5.41750 5.47361 6.00407 6.31810 6.73727 6.83433 8.24460 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.004336 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.220943 B = 6456.285551 C = 6625.417128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.194 3.806 3 H 0.092 0.908 4 N -1.116 6.116 5 S 2.717 3.283 6 O -1.045 7.045 7 O -1.043 7.043 8 C -1.032 5.032 9 H 0.133 0.867 10 C 0.070 3.930 11 N -0.896 5.896 12 Si 0.989 3.011 13 H -0.242 1.242 14 H -0.265 1.265 15 H -0.263 1.263 16 C -0.122 4.122 17 C 0.105 3.895 18 N -0.481 5.481 19 C 0.107 3.893 20 C -0.088 4.088 21 Cl -0.045 7.045 22 C -0.063 4.063 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.414 0.586 27 H 0.297 0.703 28 H 0.174 0.826 29 H 0.189 0.811 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -3.817 -16.631 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.086 3.914 3 H 0.110 0.890 4 N -0.875 5.875 5 S 2.818 3.182 6 O -1.036 7.036 7 O -1.033 7.033 8 C -1.166 5.166 9 H 0.151 0.849 10 C -0.142 4.142 11 N -0.528 5.528 12 Si 0.808 3.192 13 H -0.164 1.164 14 H -0.189 1.189 15 H -0.187 1.187 16 C -0.126 4.126 17 C -0.052 4.052 18 N -0.189 5.189 19 C -0.051 4.051 20 C -0.117 4.117 21 Cl -0.016 7.016 22 C -0.090 4.090 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.249 0.751 27 H 0.107 0.893 28 H 0.191 0.809 29 H 0.206 0.794 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.467 -4.339 -16.277 17.198 hybrid contribution -0.706 1.120 0.532 1.427 sum -4.174 -3.219 -15.745 16.604 Atomic orbital electron populations 1.22435 0.92434 1.04074 1.03890 1.19611 0.95576 0.95525 0.80689 0.89038 1.55571 1.84755 1.19257 1.27913 0.99993 0.75700 0.71915 0.70569 1.93318 1.85076 1.65085 1.60088 1.93309 1.70228 1.57294 1.82440 1.31008 1.17338 1.45529 1.22744 0.84937 1.26000 1.01767 0.92642 0.93827 1.70007 1.29052 1.34832 1.18909 0.85110 0.77024 0.78218 0.78887 1.16419 1.18938 1.18714 1.20986 1.00231 0.95466 0.95882 1.22899 0.94390 0.91520 0.96410 1.67913 1.10519 1.40189 1.00297 1.23216 0.94986 0.89605 0.97280 1.22092 1.04389 0.94214 0.90967 1.98387 1.88176 1.77057 1.37981 1.21686 0.94310 1.02298 0.90728 0.90554 0.91351 0.89424 0.75093 0.89263 0.80941 0.79434 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 9.50 71.98 0.68 -3.58 16 2 C 0.19 5.82 3.13 44.24 0.14 5.96 16 3 H 0.09 3.01 7.39 -2.39 -0.02 2.99 16 4 N -1.12 -40.46 5.43 -172.51 -0.94 -41.40 16 5 S 2.72 139.38 5.00 -56.49 -0.28 139.10 16 6 O -1.05 -61.00 18.02 -128.00 -2.31 -63.30 16 7 O -1.04 -60.07 17.36 -128.00 -2.22 -62.29 16 8 C -1.03 -53.07 9.57 67.74 0.65 -52.43 16 9 H 0.13 5.91 5.61 -2.91 -0.02 5.89 16 10 C 0.07 3.75 5.46 84.66 0.46 4.21 16 11 N -0.90 -52.20 13.19 21.45 0.28 -51.92 16 12 Si 0.99 39.43 29.54 68.60 2.03 41.45 16 13 H -0.24 -8.73 7.11 99.48 0.71 -8.03 16 14 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 16 C -0.12 -3.11 4.97 -19.78 -0.10 -3.21 16 17 C 0.10 2.56 10.33 84.69 0.87 3.43 16 18 N -0.48 -11.62 10.36 -195.76 -2.03 -13.64 16 19 C 0.11 2.19 10.99 84.70 0.93 3.12 16 20 C -0.09 -1.82 6.34 22.41 0.14 -1.68 16 21 Cl -0.04 -0.81 28.99 -2.72 -0.08 -0.89 16 22 C -0.06 -1.45 9.63 22.49 0.22 -1.24 16 23 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.07 1.97 5.74 -2.39 -0.01 1.95 16 25 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.41 12.78 7.11 -96.74 -0.69 12.10 16 27 H 0.30 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.17 3.69 6.83 -2.91 -0.02 3.67 16 29 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -73.38 292.51 -1.04 -74.42 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.51 Total: 23.88 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 4.00 Total: -45.41 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -2.68 Total: -106.96 kcal Atomic # 8 Polarization: -121.07 SS G_CDS: -4.53 Total: -125.59 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 139.38 SS G_CDS: -0.28 Total: 139.10 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -73.38 -1.04 -74.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.229 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds