Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36845 * 120.00087 * 2 1 4 4 H 1.07997 * 119.99815 * 187.84391 * 3 2 1 5 5 C 1.39065 * 119.99866 * 7.83911 * 3 2 1 6 6 N 1.31348 * 120.00359 * 7.94718 * 5 3 2 7 7 Si 1.86797 * 119.99975 * 187.94121 * 5 3 2 8 8 H 1.48498 * 109.47281 * 90.00427 * 7 5 3 9 9 H 1.48502 * 109.47418 * 210.00334 * 7 5 3 10 10 H 1.48498 * 109.47394 * 330.00137 * 7 5 3 11 11 C 1.34777 * 119.99940 * 180.02562 * 2 1 3 12 12 O 1.21599 * 119.99929 * 183.71533 * 11 2 1 13 13 C 1.47701 * 120.00189 * 3.71255 * 11 2 1 14 14 C 1.40048 * 120.95504 * 306.55999 * 13 11 2 15 15 C 1.38031 * 119.08062 * 180.02562 * 14 13 11 16 16 Cl 1.73593 * 119.47296 * 179.97438 * 15 14 13 17 17 N 1.32045 * 121.05379 * 359.97438 * 15 14 13 18 18 C 1.31755 * 122.13058 * 359.97438 * 17 15 14 19 19 Cl 1.73601 * 119.60642 * 180.27871 * 18 17 15 20 20 C 1.39009 * 120.79196 * 0.02562 * 18 17 15 21 21 O 1.35711 * 120.57619 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.47275 * 174.10563 * 1 2 3 23 23 H 1.09008 * 109.47078 * 294.10671 * 1 2 3 24 24 H 1.08995 * 109.47442 * 54.10338 * 1 2 3 25 25 H 0.97000 * 120.00452 * 179.97438 * 6 5 3 26 26 H 1.08007 * 120.45805 * 0.03943 * 14 13 11 27 27 H 0.96695 * 114.00456 * 89.99680 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.2216 1.1894 -0.1276 5 6 1.4636 2.3838 0.1643 6 7 0.1873 2.3733 0.4745 7 14 2.3578 4.0090 -0.0561 8 1 2.2642 4.4371 -1.4749 9 1 1.7348 5.0388 0.8138 10 1 3.7853 3.8432 0.3178 11 6 2.1388 -1.1672 -0.0005 12 8 3.3529 -1.1683 0.0677 13 6 1.4026 -2.4450 -0.0839 14 6 0.3706 -2.7418 0.8151 15 6 -0.2913 -3.9477 0.7022 16 17 -1.5717 -4.3263 1.8115 17 7 0.0339 -4.8180 -0.2362 18 6 0.9961 -4.5845 -1.1053 19 17 1.3642 -5.7721 -2.3169 20 6 1.7167 -3.3963 -1.0672 21 8 2.7066 -3.1602 -1.9649 22 1 -0.3634 -1.0222 -0.1055 23 1 -0.3634 0.4198 0.9381 24 1 -0.3634 0.6025 -0.8324 25 1 -0.2908 3.2094 0.5894 26 1 0.0963 -2.0366 1.5859 27 1 2.4085 -2.7194 -2.7723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193091934.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -28.864251 kcal Electronic energy + Delta-G solvation = -18580.193831 eV Core-core repulsion = 15198.448822 eV Total energy + Delta-G solvation = -3381.745009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.001 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71714 -38.37421 -37.46085 -36.68054 -36.39332 -34.93518 -32.76418 -31.46459 -29.89798 -26.71146 -25.54032 -23.72927 -23.40417 -20.13222 -18.45546 -17.67358 -17.21903 -17.01038 -15.99568 -15.43094 -14.96949 -14.64777 -14.34958 -14.12298 -13.88181 -13.17389 -12.74304 -12.39573 -11.94688 -11.78014 -11.71991 -11.34096 -11.26159 -11.17573 -11.07389 -11.00543 -10.52905 -10.50282 -9.88530 -9.55091 -9.32202 -8.69989 -8.68592 -8.13679 -6.53889 -4.06616 0.65266 0.77196 1.42391 1.95154 2.98048 3.11449 3.16007 3.20697 3.67125 3.86065 3.99872 4.27856 4.74400 4.78589 4.91400 5.07633 5.24102 5.58873 5.86479 6.01970 6.13624 6.76655 7.12780 7.30528 7.30858 7.58440 7.75931 8.18810 8.89271 9.09453 9.65376 10.39275 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.005426 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.159897 B = 5158.645187 C = 6239.294434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.419 5.419 3 C -0.299 4.299 4 H 0.111 0.889 5 C 0.031 3.969 6 N -0.872 5.872 7 Si 0.937 3.063 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.266 1.266 11 C 0.460 3.540 12 O -0.568 6.568 13 C -0.043 4.043 14 C -0.112 4.112 15 C 0.175 3.825 16 Cl -0.021 7.021 17 N -0.463 5.463 18 C 0.163 3.837 19 Cl -0.016 7.016 20 C 0.112 3.888 21 O -0.459 6.459 22 H 0.029 0.971 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.272 0.728 26 H 0.161 0.839 27 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 -8.474 -2.471 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.136 5.136 3 C -0.426 4.426 4 H 0.129 0.871 5 C -0.174 4.174 6 N -0.511 5.511 7 Si 0.763 3.237 8 H -0.200 1.200 9 H -0.206 1.206 10 H -0.190 1.190 11 C 0.247 3.753 12 O -0.453 6.453 13 C -0.055 4.055 14 C -0.134 4.134 15 C 0.012 3.988 16 Cl 0.007 6.993 17 N -0.179 5.179 18 C -0.003 4.003 19 Cl 0.012 6.988 20 C 0.061 3.939 21 O -0.268 6.268 22 H 0.048 0.952 23 H 0.107 0.893 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.179 0.821 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.518 -9.432 -2.049 10.657 hybrid contribution 0.073 1.503 -0.388 1.554 sum -4.445 -7.929 -2.437 9.411 Atomic orbital electron populations 1.22138 0.80100 0.97148 1.05281 1.43690 1.06264 1.04624 1.58977 1.19923 0.94349 0.81628 1.46727 0.87141 1.25446 0.95948 1.00232 0.95741 1.70057 1.08537 1.28204 1.44339 0.85739 0.79627 0.79905 0.78451 1.20038 1.20600 1.19033 1.17174 0.87255 0.81929 0.88919 1.90696 1.12482 1.85542 1.56577 1.21156 0.93461 0.96854 0.94070 1.22178 0.94726 0.96066 1.00449 1.21144 0.93736 0.90755 0.93172 1.98406 1.47936 1.94840 1.58082 1.65983 1.15248 1.33188 1.03448 1.21794 0.93872 0.90738 0.93900 1.98403 1.92709 1.56697 1.50942 1.18934 0.90003 0.91551 0.93398 1.84850 1.30417 1.80932 1.30578 0.95250 0.89275 0.91809 0.91699 0.82140 0.74755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.00 7.99 59.84 0.48 2.47 15 2 N -0.42 -9.99 3.02 -123.33 -0.37 -10.36 15 3 C -0.30 -7.69 9.53 -15.01 -0.14 -7.84 15 4 H 0.11 3.00 7.21 -52.49 -0.38 2.62 15 5 C 0.03 0.74 5.38 -17.45 -0.09 0.65 15 6 N -0.87 -20.92 9.67 55.50 0.54 -20.39 15 7 Si 0.94 19.19 29.56 -169.99 -5.02 14.17 15 8 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 9 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 11 C 0.46 10.74 6.88 -12.39 -0.09 10.66 15 12 O -0.57 -15.42 16.42 4.40 0.07 -15.35 15 13 C -0.04 -0.82 4.91 -104.55 -0.51 -1.33 15 14 C -0.11 -1.86 7.26 -38.98 -0.28 -2.14 15 15 C 0.17 2.72 7.26 -17.54 -0.13 2.59 15 16 Cl -0.02 -0.28 29.10 -51.86 -1.51 -1.79 15 17 N -0.46 -7.51 10.28 -7.44 -0.08 -7.59 15 18 C 0.16 2.61 7.29 -17.30 -0.13 2.48 15 19 Cl -0.02 -0.22 28.66 -51.86 -1.49 -1.70 15 20 C 0.11 1.94 6.74 -38.49 -0.26 1.68 15 21 O -0.46 -7.62 12.30 -19.72 -0.24 -7.86 15 22 H 0.03 0.52 4.57 -51.93 -0.24 0.28 15 23 H 0.09 1.94 6.74 -51.92 -0.35 1.59 15 24 H 0.06 1.38 7.44 -51.93 -0.39 0.99 15 25 H 0.27 6.18 8.31 -40.82 -0.34 5.84 15 26 H 0.16 2.50 7.36 -52.48 -0.39 2.12 15 27 H 0.39 4.75 9.06 45.56 0.41 5.16 15 LS Contribution 274.25 15.07 4.13 4.13 Total: -1.00 -28.85 274.25 -5.58 -34.43 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -0.46 Total: 3.07 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -1.15 Total: 9.23 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.09 Total: -38.33 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.17 Total: -23.21 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -3.00 Total: -3.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.85 -5.58 -34.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193091934.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.563 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds