Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36845 * 120.00087 * 2 1 4 4 H 1.07997 * 119.99815 * 187.84391 * 3 2 1 5 5 C 1.39065 * 119.99866 * 7.83911 * 3 2 1 6 6 N 1.31348 * 120.00359 * 7.94718 * 5 3 2 7 7 Si 1.86797 * 119.99975 * 187.94121 * 5 3 2 8 8 H 1.48498 * 109.47281 * 90.00427 * 7 5 3 9 9 H 1.48502 * 109.47418 * 210.00334 * 7 5 3 10 10 H 1.48498 * 109.47394 * 330.00137 * 7 5 3 11 11 C 1.34777 * 119.99940 * 180.02562 * 2 1 3 12 12 O 1.21599 * 119.99929 * 183.71533 * 11 2 1 13 13 C 1.47701 * 120.00189 * 3.71255 * 11 2 1 14 14 C 1.40048 * 120.95504 * 306.55999 * 13 11 2 15 15 C 1.38031 * 119.08062 * 180.02562 * 14 13 11 16 16 Cl 1.73593 * 119.47296 * 179.97438 * 15 14 13 17 17 N 1.32045 * 121.05379 * 359.97438 * 15 14 13 18 18 C 1.31755 * 122.13058 * 359.97438 * 17 15 14 19 19 Cl 1.73601 * 119.60642 * 180.27871 * 18 17 15 20 20 C 1.39009 * 120.79196 * 0.02562 * 18 17 15 21 21 O 1.35711 * 120.57619 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.47275 * 174.10563 * 1 2 3 23 23 H 1.09008 * 109.47078 * 294.10671 * 1 2 3 24 24 H 1.08995 * 109.47442 * 54.10338 * 1 2 3 25 25 H 0.97000 * 120.00452 * 179.97438 * 6 5 3 26 26 H 1.08007 * 120.45805 * 0.03943 * 14 13 11 27 27 H 0.96695 * 114.00456 * 89.99680 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.2216 1.1894 -0.1276 5 6 1.4636 2.3838 0.1643 6 7 0.1873 2.3733 0.4745 7 14 2.3578 4.0090 -0.0561 8 1 2.2642 4.4371 -1.4749 9 1 1.7348 5.0388 0.8138 10 1 3.7853 3.8432 0.3178 11 6 2.1388 -1.1672 -0.0005 12 8 3.3529 -1.1683 0.0677 13 6 1.4026 -2.4450 -0.0839 14 6 0.3706 -2.7418 0.8151 15 6 -0.2913 -3.9477 0.7022 16 17 -1.5717 -4.3263 1.8115 17 7 0.0339 -4.8180 -0.2362 18 6 0.9961 -4.5845 -1.1053 19 17 1.3642 -5.7721 -2.3169 20 6 1.7167 -3.3963 -1.0672 21 8 2.7066 -3.1602 -1.9649 22 1 -0.3634 -1.0222 -0.1055 23 1 -0.3634 0.4198 0.9381 24 1 -0.3634 0.6025 -0.8324 25 1 -0.2908 3.2094 0.5894 26 1 0.0963 -2.0366 1.5859 27 1 2.4085 -2.7194 -2.7723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193091934.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -49.186340 kcal Electronic energy + Delta-G solvation = -18581.075063 eV Core-core repulsion = 15198.448822 eV Total energy + Delta-G solvation = -3382.626241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.001 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.12030 -40.09278 -38.75176 -37.89529 -37.58591 -36.81049 -34.35194 -33.16544 -31.21978 -28.48020 -27.20634 -25.30860 -24.75538 -21.74527 -19.80086 -19.23700 -18.86116 -18.54111 -17.57621 -16.88093 -16.35896 -16.28624 -15.91418 -15.65307 -15.49464 -14.62093 -14.42382 -13.73989 -13.57918 -13.45770 -12.99069 -12.89241 -12.74074 -12.53227 -12.48905 -12.25792 -12.20585 -12.12979 -11.32088 -11.13868 -10.98037 -10.49918 -10.01286 -9.94217 -8.36695 -6.01174 -0.64801 -0.61500 0.19809 0.72017 1.34671 1.43251 1.54611 1.74161 2.08813 2.19854 2.62511 2.70694 3.03940 3.32150 3.45467 3.60724 3.88566 4.11778 4.46336 4.48759 4.74557 5.04344 5.35875 5.42331 5.89318 6.01988 6.32735 6.44700 7.02204 7.26521 7.81841 8.54616 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.005426 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.159897 B = 5158.645187 C = 6239.294434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.430 5.430 3 C -0.341 4.341 4 H 0.084 0.916 5 C 0.005 3.995 6 N -0.881 5.881 7 Si 0.995 3.005 8 H -0.267 1.267 9 H -0.269 1.269 10 H -0.275 1.275 11 C 0.460 3.540 12 O -0.615 6.615 13 C -0.064 4.064 14 C -0.105 4.105 15 C 0.178 3.822 16 Cl 0.007 6.993 17 N -0.460 5.460 18 C 0.165 3.835 19 Cl 0.010 6.990 20 C 0.116 3.884 21 O -0.471 6.471 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.279 0.721 26 H 0.169 0.831 27 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -9.194 -2.640 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.146 5.146 3 C -0.469 4.469 4 H 0.102 0.898 5 C -0.199 4.199 6 N -0.519 5.519 7 Si 0.818 3.182 8 H -0.192 1.192 9 H -0.194 1.194 10 H -0.200 1.200 11 C 0.249 3.751 12 O -0.504 6.504 13 C -0.076 4.076 14 C -0.127 4.127 15 C 0.015 3.985 16 Cl 0.035 6.965 17 N -0.176 5.176 18 C -0.002 4.002 19 Cl 0.038 6.962 20 C 0.065 3.935 21 O -0.283 6.283 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.187 0.813 27 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -5.868 -10.156 -2.231 11.940 hybrid contribution 0.427 1.578 -0.344 1.671 sum -5.441 -8.578 -2.575 10.479 Atomic orbital electron populations 1.22021 0.78420 0.98717 1.04117 1.43840 1.07320 1.04398 1.59001 1.19819 0.93743 0.83306 1.49997 0.89827 1.26110 0.96713 1.02362 0.94670 1.70120 1.08999 1.29217 1.43609 0.84891 0.78050 0.76418 0.78800 1.19179 1.19365 1.19970 1.17691 0.86935 0.83072 0.87397 1.90646 1.14740 1.86688 1.58277 1.20806 0.94976 0.95493 0.96331 1.22186 0.93821 0.96756 0.99929 1.21227 0.93965 0.90142 0.93165 1.98421 1.46446 1.94605 1.56993 1.66157 1.15003 1.33065 1.03337 1.21830 0.93346 0.90787 0.94215 1.98414 1.92531 1.55454 1.49774 1.18952 0.89771 0.91588 0.93160 1.84796 1.30808 1.81236 1.31474 0.92244 0.90307 0.92995 0.91087 0.81340 0.72623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.52 7.99 127.77 1.02 5.55 15 2 N -0.43 -20.92 3.02 -662.37 -2.00 -22.92 15 3 C -0.34 -18.14 9.53 84.11 0.80 -17.33 15 4 H 0.08 4.79 7.21 -2.91 -0.02 4.77 15 5 C 0.00 0.24 5.38 84.96 0.46 0.70 15 6 N -0.88 -42.03 9.67 21.68 0.21 -41.82 15 7 Si 1.00 39.33 29.56 68.60 2.03 41.36 15 8 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 9 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 11 C 0.46 21.98 6.88 86.74 0.60 22.57 15 12 O -0.62 -34.63 16.42 -3.18 -0.05 -34.69 15 13 C -0.06 -2.41 4.91 -19.82 -0.10 -2.50 15 14 C -0.11 -3.33 7.26 22.66 0.16 -3.17 15 15 C 0.18 5.13 7.26 84.61 0.61 5.74 15 16 Cl 0.01 0.16 29.10 -2.72 -0.08 0.08 15 17 N -0.46 -13.79 10.28 -177.46 -1.82 -15.61 15 18 C 0.16 4.94 7.29 84.89 0.62 5.56 15 19 Cl 0.01 0.24 28.66 -2.72 -0.08 0.16 15 20 C 0.12 3.90 6.74 22.97 0.15 4.06 15 21 O -0.47 -15.36 12.30 -89.48 -1.10 -16.46 15 22 H 0.06 2.05 4.57 -2.39 -0.01 2.04 15 23 H 0.08 3.41 6.74 -2.38 -0.02 3.39 15 24 H 0.05 2.24 7.44 -2.39 -0.02 2.22 15 25 H 0.28 12.38 8.31 -92.71 -0.77 11.61 15 26 H 0.17 5.02 7.36 -2.91 -0.02 5.00 15 27 H 0.41 9.66 9.06 -74.06 -0.67 8.99 15 Total: -1.00 -62.01 274.25 2.03 -59.99 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.59 Total: 8.74 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 4.33 Total: 21.17 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.61 Total: -80.36 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -1.15 Total: -51.15 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.16 Total: 0.24 kcal Total: -62.01 2.03 -59.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193091934.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.799 kcal (2) G-P(sol) polarization free energy of solvation -62.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds