Wall clock time and date at job start Tue Mar 31 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46996 * 2 1 4 4 H 1.08999 * 109.47135 * 183.90121 * 3 2 1 5 5 C 1.50709 * 109.47219 * 303.89749 * 3 2 1 6 6 H 1.07995 * 119.99931 * 115.35671 * 5 3 2 7 7 C 1.37876 * 119.99636 * 295.36750 * 5 3 2 8 8 N 1.31512 * 120.00683 * 354.18406 * 7 5 3 9 9 Si 1.86805 * 119.99680 * 174.19013 * 7 5 3 10 10 H 1.48504 * 109.46971 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46735 * 299.99415 * 9 7 5 12 12 H 1.48499 * 109.47413 * 59.99225 * 9 7 5 13 13 N 1.46902 * 109.47214 * 63.89700 * 3 2 1 14 14 C 1.46900 * 110.99920 * 80.80597 * 13 3 2 15 15 C 1.50691 * 109.47232 * 184.82360 * 14 13 3 16 16 C 1.38238 * 120.00237 * 269.73096 * 15 14 13 17 17 C 1.38240 * 119.99762 * 179.76686 * 16 15 14 18 18 C 1.38231 * 120.00259 * 0.47761 * 17 16 15 19 19 C 1.50693 * 120.00235 * 179.76881 * 18 17 16 20 20 C 1.52992 * 109.47362 * 120.02559 * 19 18 17 21 21 C 1.53005 * 109.47484 * 240.03064 * 19 18 17 22 22 C 1.53003 * 109.46941 * 0.02562 * 19 18 17 23 23 C 1.53002 * 109.47205 * 179.97438 * 22 19 18 24 24 C 1.38238 * 119.99806 * 359.79785 * 18 17 16 25 25 C 1.38231 * 119.99990 * 359.95220 * 24 18 17 26 26 H 1.09001 * 109.46960 * 304.86944 * 1 2 3 27 27 H 1.08992 * 109.47453 * 64.86828 * 1 2 3 28 28 H 1.09004 * 109.46951 * 184.87214 * 1 2 3 29 29 H 1.08998 * 109.46983 * 240.00471 * 2 1 3 30 30 H 1.08994 * 109.46939 * 119.99681 * 2 1 3 31 31 H 0.97002 * 119.99241 * 354.16788 * 8 7 5 32 32 H 1.00894 * 110.99694 * 316.84965 * 13 3 2 33 33 H 1.08998 * 109.46999 * 304.82836 * 14 13 3 34 34 H 1.09009 * 109.46890 * 64.82253 * 14 13 3 35 35 H 1.08001 * 119.99920 * 359.97438 * 16 15 14 36 36 H 1.07997 * 119.99596 * 180.24932 * 17 16 15 37 37 H 1.09002 * 109.47233 * 59.99815 * 20 19 18 38 38 H 1.09003 * 109.47684 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47143 * 300.00363 * 20 19 18 40 40 H 1.09001 * 109.47416 * 59.99660 * 21 19 18 41 41 H 1.08993 * 109.47142 * 180.02562 * 21 19 18 42 42 H 1.09002 * 109.46322 * 299.99702 * 21 19 18 43 43 H 1.09001 * 109.47377 * 299.99983 * 22 19 18 44 44 H 1.08999 * 109.46728 * 60.00149 * 22 19 18 45 45 H 1.09001 * 109.47145 * 59.99956 * 23 22 19 46 46 H 1.08998 * 109.47451 * 180.02562 * 23 22 19 47 47 H 1.09001 * 109.47074 * 300.00334 * 23 22 19 48 48 H 1.07994 * 120.00001 * 179.97438 * 24 18 17 49 49 H 1.07999 * 120.00075 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1277 1.4433 -0.0699 5 6 1.4603 2.1803 -1.1794 6 1 0.7873 3.0097 -1.0198 7 6 1.7891 1.7962 -2.4621 8 7 2.6949 0.8629 -2.6574 9 14 0.9481 2.6017 -3.9227 10 1 1.4751 2.0167 -5.1818 11 1 -0.5161 2.3670 -3.8421 12 1 1.2169 4.0621 -3.9054 13 7 1.6287 2.1073 1.2437 14 6 2.5284 1.7563 2.3507 15 6 2.0091 2.3590 3.6305 16 6 2.4156 3.6234 4.0139 17 6 1.9355 4.1781 5.1855 18 6 1.0565 3.4646 5.9787 19 6 0.5372 4.0673 7.2585 20 6 -0.9880 4.1680 7.1927 21 6 0.9394 3.1815 8.4395 22 6 1.1330 5.4644 7.4428 23 6 0.6053 6.0767 8.7419 24 6 0.6544 2.1980 5.5982 25 6 1.1305 1.6453 4.4240 26 1 -0.3633 0.5875 0.8432 27 1 -0.3634 0.4364 -0.9303 28 1 -0.3633 -1.0240 0.0873 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1921 0.5048 -1.9054 32 1 0.6711 1.8865 1.4721 33 1 2.5739 0.6720 2.4519 34 1 3.5261 2.1442 2.1449 35 1 3.1058 4.1791 3.3964 36 1 2.2500 5.1676 5.4829 37 1 -1.4125 3.1727 7.0613 38 1 -1.3637 4.6043 8.1182 39 1 -1.2745 4.7990 6.3514 40 1 2.0260 3.1098 8.4864 41 1 0.5633 3.6173 9.3650 42 1 0.5149 2.1862 8.3081 43 1 2.2197 5.3928 7.4898 44 1 0.8465 6.0955 6.6016 45 1 0.8914 5.4457 9.5834 46 1 1.0294 7.0721 8.8731 47 1 -0.4814 6.1484 8.6946 48 1 -0.0320 1.6403 6.2180 49 1 0.8160 0.6558 4.1265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194942591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:02 Heat of formation + Delta-G solvation = -5.537650 kcal Electronic energy + Delta-G solvation = -23172.797774 eV Core-core repulsion = 20098.379350 eV Total energy + Delta-G solvation = -3074.418424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.99994 -37.58231 -36.33278 -33.08675 -31.49701 -30.99984 -30.25049 -29.07339 -27.46380 -26.29386 -24.84117 -23.70933 -23.49249 -21.97588 -21.14448 -19.48719 -18.84032 -17.01075 -16.44278 -15.35551 -15.11495 -14.93946 -14.69553 -14.19083 -13.83574 -13.70793 -13.67203 -13.51492 -13.38081 -13.20817 -12.58793 -12.52382 -12.24977 -12.17201 -12.03068 -11.94925 -11.62826 -11.35243 -11.22415 -11.15662 -11.05211 -10.81681 -10.75557 -10.50015 -10.37603 -10.19879 -10.07260 -10.01799 -9.83061 -8.72051 -8.59287 -8.36984 -8.25547 -7.28554 -6.27369 -3.96845 1.52379 1.60551 3.47798 3.49030 3.67690 3.91590 4.46321 4.52749 4.57129 4.75757 5.05801 5.10275 5.14111 5.15422 5.17170 5.25183 5.37386 5.41527 5.47624 5.48873 5.58079 5.65299 5.68998 5.73774 5.78682 5.81199 5.86099 5.90357 5.99446 6.08073 6.11878 6.14841 6.16744 6.18959 6.28519 6.30298 6.35692 6.63182 6.69895 6.75168 6.91517 7.00926 7.07652 7.20378 7.27926 7.30533 7.93635 8.28738 8.48318 8.66866 8.95077 9.70987 11.08287 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.003019 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.193993 B = 9271.358790 C = 9560.665142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.025 0.975 5 C -0.569 4.569 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.092 3.908 15 C -0.072 4.072 16 C -0.097 4.097 17 C -0.123 4.123 18 C -0.080 4.080 19 C -0.022 4.022 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.156 4.156 24 C -0.117 4.117 25 C -0.115 4.115 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.268 0.732 32 H 0.329 0.671 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.115 0.885 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 5.105 21.934 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.192 4.192 3 C 0.095 3.905 4 H 0.043 0.957 5 C -0.608 4.608 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.301 5.301 14 C -0.037 4.037 15 C -0.072 4.072 16 C -0.116 4.116 17 C -0.141 4.141 18 C -0.081 4.081 19 C -0.022 4.022 20 C -0.197 4.197 21 C -0.196 4.196 22 C -0.153 4.153 23 C -0.213 4.213 24 C -0.135 4.135 25 C -0.134 4.134 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.133 0.867 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.812 5.648 20.113 21.236 hybrid contribution -0.118 -0.982 1.781 2.037 sum -3.930 4.667 21.894 22.728 Atomic orbital electron populations 1.21540 0.96815 0.98193 1.01938 1.22221 0.96106 1.01436 0.99486 1.19338 0.95399 0.88420 0.87329 0.95670 1.21834 1.30359 1.17607 0.91007 0.92717 1.25696 0.96711 0.95963 1.00133 1.70797 1.22495 1.26792 1.35335 0.83617 0.75638 0.75610 0.75850 1.20999 1.21555 1.21520 1.60904 1.04913 1.62214 1.02058 1.20935 0.97718 0.96532 0.88510 1.20011 0.96713 0.94668 0.95820 1.21060 0.99800 0.94807 0.95899 1.21109 0.98136 0.99856 0.95002 1.19696 0.97841 0.94560 0.95971 1.19455 0.95532 0.94826 0.92425 1.21937 0.93960 1.02015 1.01795 1.21932 1.01481 0.99202 0.97001 1.21664 1.00359 0.95229 0.98066 1.21912 1.01344 1.00363 0.97713 1.20831 1.00502 0.95278 0.96881 1.21025 0.97684 0.99862 0.94804 0.94599 0.91372 0.95504 0.91264 0.96168 0.92071 0.85187 0.95486 0.91139 0.86034 0.86061 0.92564 0.92263 0.92441 0.92607 0.92251 0.92596 0.91683 0.91561 0.92498 0.92944 0.92430 0.86704 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.38 37.16 0.35 -2.33 16 2 C -0.15 -3.51 5.46 -26.73 -0.15 -3.65 16 3 C 0.20 5.03 1.95 -68.86 -0.13 4.89 16 4 H 0.03 0.69 7.31 -51.93 -0.38 0.31 16 5 C -0.57 -15.70 7.43 -34.44 -0.26 -15.95 16 6 H 0.05 1.55 7.82 -52.49 -0.41 1.14 16 7 C 0.02 0.51 5.27 -17.82 -0.09 0.42 16 8 N -0.92 -27.12 12.88 55.43 0.71 -26.41 16 9 Si 1.06 25.21 29.91 -169.99 -5.08 20.13 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -14.42 6.24 -109.22 -0.68 -15.10 16 14 C 0.09 1.69 5.63 -4.98 -0.03 1.66 16 15 C -0.07 -1.15 5.34 -104.63 -0.56 -1.70 16 16 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 17 C -0.12 -1.58 8.98 -39.58 -0.36 -1.94 16 18 C -0.08 -0.97 4.76 -104.63 -0.50 -1.46 16 19 C -0.02 -0.21 0.63 -155.66 -0.10 -0.31 16 20 C -0.14 -1.24 7.93 37.15 0.29 -0.95 16 21 C -0.14 -1.17 7.93 37.16 0.29 -0.87 16 22 C -0.12 -0.99 3.65 -26.73 -0.10 -1.08 16 23 C -0.16 -1.10 9.21 37.16 0.34 -0.76 16 24 C -0.12 -1.48 8.71 -39.58 -0.34 -1.82 16 25 C -0.12 -1.66 9.70 -39.58 -0.38 -2.05 16 26 H 0.04 0.70 6.24 -51.93 -0.32 0.37 16 27 H 0.07 1.58 7.30 -51.93 -0.38 1.20 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.76 6.27 -51.93 -0.33 1.43 16 30 H 0.02 0.42 7.04 -51.93 -0.37 0.05 16 31 H 0.27 7.89 6.04 -40.82 -0.25 7.64 16 32 H 0.33 6.91 6.43 -39.30 -0.25 6.65 16 33 H 0.03 0.49 6.94 -51.93 -0.36 0.13 16 34 H 0.07 1.31 8.08 -51.92 -0.42 0.89 16 35 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.12 1.33 5.90 -52.49 -0.31 1.02 16 37 H 0.06 0.50 7.39 -51.93 -0.38 0.11 16 38 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 42 H 0.05 0.47 7.39 -51.93 -0.38 0.08 16 43 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 44 H 0.07 0.60 7.51 -51.93 -0.39 0.21 16 45 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 48 H 0.11 1.23 7.10 -52.49 -0.37 0.86 16 49 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -29.10 368.70 -9.96 -39.05 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.36 Total: 6.52 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -2.10 Total: -29.74 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.03 Total: -41.51 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.10 -9.96 -39.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194942591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.514 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds