Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46996 * 2 1 4 4 H 1.08999 * 109.47135 * 183.90121 * 3 2 1 5 5 C 1.50709 * 109.47219 * 303.89749 * 3 2 1 6 6 H 1.07995 * 119.99931 * 115.35671 * 5 3 2 7 7 C 1.37876 * 119.99636 * 295.36750 * 5 3 2 8 8 N 1.31512 * 120.00683 * 354.18406 * 7 5 3 9 9 Si 1.86805 * 119.99680 * 174.19013 * 7 5 3 10 10 H 1.48504 * 109.46971 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46735 * 299.99415 * 9 7 5 12 12 H 1.48499 * 109.47413 * 59.99225 * 9 7 5 13 13 N 1.46902 * 109.47214 * 63.89700 * 3 2 1 14 14 C 1.46900 * 110.99920 * 80.80597 * 13 3 2 15 15 C 1.50691 * 109.47232 * 184.82360 * 14 13 3 16 16 C 1.38238 * 120.00237 * 269.73096 * 15 14 13 17 17 C 1.38240 * 119.99762 * 179.76686 * 16 15 14 18 18 C 1.38231 * 120.00259 * 0.47761 * 17 16 15 19 19 C 1.50693 * 120.00235 * 179.76881 * 18 17 16 20 20 C 1.52992 * 109.47362 * 120.02559 * 19 18 17 21 21 C 1.53005 * 109.47484 * 240.03064 * 19 18 17 22 22 C 1.53003 * 109.46941 * 0.02562 * 19 18 17 23 23 C 1.53002 * 109.47205 * 179.97438 * 22 19 18 24 24 C 1.38238 * 119.99806 * 359.79785 * 18 17 16 25 25 C 1.38231 * 119.99990 * 359.95220 * 24 18 17 26 26 H 1.09001 * 109.46960 * 304.86944 * 1 2 3 27 27 H 1.08992 * 109.47453 * 64.86828 * 1 2 3 28 28 H 1.09004 * 109.46951 * 184.87214 * 1 2 3 29 29 H 1.08998 * 109.46983 * 240.00471 * 2 1 3 30 30 H 1.08994 * 109.46939 * 119.99681 * 2 1 3 31 31 H 0.97002 * 119.99241 * 354.16788 * 8 7 5 32 32 H 1.00894 * 110.99694 * 316.84965 * 13 3 2 33 33 H 1.08998 * 109.46999 * 304.82836 * 14 13 3 34 34 H 1.09009 * 109.46890 * 64.82253 * 14 13 3 35 35 H 1.08001 * 119.99920 * 359.97438 * 16 15 14 36 36 H 1.07997 * 119.99596 * 180.24932 * 17 16 15 37 37 H 1.09002 * 109.47233 * 59.99815 * 20 19 18 38 38 H 1.09003 * 109.47684 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47143 * 300.00363 * 20 19 18 40 40 H 1.09001 * 109.47416 * 59.99660 * 21 19 18 41 41 H 1.08993 * 109.47142 * 180.02562 * 21 19 18 42 42 H 1.09002 * 109.46322 * 299.99702 * 21 19 18 43 43 H 1.09001 * 109.47377 * 299.99983 * 22 19 18 44 44 H 1.08999 * 109.46728 * 60.00149 * 22 19 18 45 45 H 1.09001 * 109.47145 * 59.99956 * 23 22 19 46 46 H 1.08998 * 109.47451 * 180.02562 * 23 22 19 47 47 H 1.09001 * 109.47074 * 300.00334 * 23 22 19 48 48 H 1.07994 * 120.00001 * 179.97438 * 24 18 17 49 49 H 1.07999 * 120.00075 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1277 1.4433 -0.0699 5 6 1.4603 2.1803 -1.1794 6 1 0.7873 3.0097 -1.0198 7 6 1.7891 1.7962 -2.4621 8 7 2.6949 0.8629 -2.6574 9 14 0.9481 2.6017 -3.9227 10 1 1.4751 2.0167 -5.1818 11 1 -0.5161 2.3670 -3.8421 12 1 1.2169 4.0621 -3.9054 13 7 1.6287 2.1073 1.2437 14 6 2.5284 1.7563 2.3507 15 6 2.0091 2.3590 3.6305 16 6 2.4156 3.6234 4.0139 17 6 1.9355 4.1781 5.1855 18 6 1.0565 3.4646 5.9787 19 6 0.5372 4.0673 7.2585 20 6 -0.9880 4.1680 7.1927 21 6 0.9394 3.1815 8.4395 22 6 1.1330 5.4644 7.4428 23 6 0.6053 6.0767 8.7419 24 6 0.6544 2.1980 5.5982 25 6 1.1305 1.6453 4.4240 26 1 -0.3633 0.5875 0.8432 27 1 -0.3634 0.4364 -0.9303 28 1 -0.3633 -1.0240 0.0873 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1921 0.5048 -1.9054 32 1 0.6711 1.8865 1.4721 33 1 2.5739 0.6720 2.4519 34 1 3.5261 2.1442 2.1449 35 1 3.1058 4.1791 3.3964 36 1 2.2500 5.1676 5.4829 37 1 -1.4125 3.1727 7.0613 38 1 -1.3637 4.6043 8.1182 39 1 -1.2745 4.7990 6.3514 40 1 2.0260 3.1098 8.4864 41 1 0.5633 3.6173 9.3650 42 1 0.5149 2.1862 8.3081 43 1 2.2197 5.3928 7.4898 44 1 0.8465 6.0955 6.6016 45 1 0.8914 5.4457 9.5834 46 1 1.0294 7.0721 8.8731 47 1 -0.4814 6.1484 8.6946 48 1 -0.0320 1.6403 6.2180 49 1 0.8160 0.6558 4.1265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194942591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -19.586697 kcal Electronic energy + Delta-G solvation = -23173.406986 eV Core-core repulsion = 20098.379350 eV Total energy + Delta-G solvation = -3075.027636 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98132 -38.94769 -37.70849 -34.80487 -33.01405 -32.15612 -31.41013 -30.18132 -28.12012 -27.98637 -26.12544 -25.45754 -24.81546 -23.02105 -22.25158 -21.40661 -19.66593 -18.88214 -17.62121 -16.68417 -16.30901 -16.11495 -15.69253 -15.58038 -15.48018 -15.14516 -14.91002 -14.56861 -14.42632 -14.33407 -14.13515 -13.93110 -13.55650 -13.20746 -13.00132 -12.97358 -12.83666 -12.64852 -12.62447 -12.32625 -12.15784 -12.03173 -12.01188 -11.91820 -11.88941 -11.69076 -11.47671 -11.35391 -11.15097 -10.63391 -10.41540 -9.79748 -9.49646 -9.03230 -8.51129 -6.21656 0.42392 0.52709 1.55023 1.61965 1.81125 2.59613 2.82146 3.24500 3.63217 3.69736 3.77921 3.94687 4.07486 4.08966 4.15014 4.30382 4.31869 4.38033 4.43307 4.50446 4.53990 4.54326 4.60276 4.66743 4.77639 4.80257 4.86322 4.91602 4.98888 5.05591 5.08030 5.11293 5.15647 5.19119 5.19607 5.20653 5.26353 5.28869 5.39137 5.48281 5.50653 5.53524 5.61972 5.76625 5.77416 5.95447 6.13296 6.19591 6.52421 6.72215 6.77890 7.53888 8.84181 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.003019 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.193993 B = 9271.358790 C = 9560.665142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.144 4.144 3 C 0.207 3.793 4 H -0.008 1.008 5 C -0.576 4.576 6 H 0.044 0.956 7 C -0.027 4.027 8 N -0.939 5.939 9 Si 1.107 2.893 10 H -0.287 1.287 11 H -0.271 1.271 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.100 3.900 15 C -0.093 4.093 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.074 4.074 19 C -0.021 4.021 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.117 4.117 23 C -0.153 4.153 24 C -0.116 4.116 25 C -0.121 4.121 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.257 0.743 32 H 0.334 0.666 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.138 0.862 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 5.692 24.183 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.184 4.184 3 C 0.098 3.902 4 H 0.010 0.990 5 C -0.615 4.615 6 H 0.062 0.938 7 C -0.225 4.225 8 N -0.578 5.578 9 Si 0.930 3.070 10 H -0.213 1.213 11 H -0.196 1.196 12 H -0.202 1.202 13 N -0.306 5.306 14 C -0.029 4.029 15 C -0.093 4.093 16 C -0.130 4.130 17 C -0.143 4.143 18 C -0.075 4.075 19 C -0.021 4.021 20 C -0.196 4.196 21 C -0.195 4.195 22 C -0.154 4.154 23 C -0.210 4.210 24 C -0.134 4.134 25 C -0.140 4.140 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.156 0.844 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.556 6.240 22.394 23.901 hybrid contribution 0.448 -1.125 1.209 1.711 sum -5.108 5.115 23.603 24.685 Atomic orbital electron populations 1.21446 0.94990 0.99971 1.01264 1.22067 0.97628 0.99834 0.98897 1.19118 0.93235 0.89610 0.88214 0.98974 1.22082 1.29795 1.17331 0.92270 0.93802 1.26979 0.96639 0.95844 1.03060 1.70905 1.23749 1.28261 1.34878 0.83052 0.75718 0.75365 0.72829 1.21252 1.19645 1.20208 1.60763 1.05625 1.62148 1.02084 1.20833 0.96599 0.96697 0.88779 1.19815 0.98609 0.95557 0.95333 1.21127 1.00291 0.94698 0.96920 1.21323 0.98020 1.00663 0.94257 1.20085 0.96541 0.94198 0.96629 1.19517 0.95931 0.95333 0.91338 1.21939 0.93339 1.02048 1.02304 1.21926 1.01228 0.99158 0.97141 1.21662 1.00288 0.94690 0.98766 1.21892 1.01564 1.00647 0.96938 1.21091 1.00356 0.95593 0.96321 1.21136 0.97416 1.00101 0.95315 0.93062 0.93781 0.92861 0.94107 0.94369 0.93286 0.84706 0.95384 0.92398 0.86736 0.84328 0.92440 0.90515 0.93513 0.93127 0.90572 0.92428 0.91863 0.92247 0.91777 0.92488 0.92011 0.84419 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.38 71.98 0.68 -4.24 16 2 C -0.14 -6.70 5.46 30.60 0.17 -6.53 16 3 C 0.21 10.53 1.95 44.17 0.09 10.61 16 4 H -0.01 -0.43 7.31 -2.39 -0.02 -0.45 16 5 C -0.58 -32.39 7.43 25.60 0.19 -32.20 16 6 H 0.04 2.51 7.82 -2.91 -0.02 2.49 16 7 C -0.03 -1.56 5.27 84.65 0.45 -1.12 16 8 N -0.94 -57.02 12.88 21.45 0.28 -56.74 16 9 Si 1.11 50.92 29.91 68.60 2.05 52.97 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.67 -29.52 6.24 -499.45 -3.12 -32.64 16 14 C 0.10 3.74 5.63 85.55 0.48 4.22 16 15 C -0.09 -2.96 5.34 -19.87 -0.11 -3.07 16 16 C -0.11 -3.34 9.70 22.27 0.22 -3.12 16 17 C -0.12 -3.07 8.98 22.27 0.20 -2.87 16 18 C -0.07 -1.64 4.76 -19.87 -0.09 -1.73 16 19 C -0.02 -0.34 0.63 -52.93 -0.03 -0.37 16 20 C -0.14 -2.07 7.93 71.98 0.57 -1.50 16 21 C -0.14 -1.89 7.93 71.98 0.57 -1.32 16 22 C -0.12 -1.71 3.65 30.60 0.11 -1.60 16 23 C -0.15 -1.72 9.21 71.98 0.66 -1.06 16 24 C -0.12 -2.68 8.71 22.27 0.19 -2.48 16 25 C -0.12 -3.35 9.70 22.27 0.22 -3.14 16 26 H 0.05 1.93 6.24 -2.39 -0.01 1.91 16 27 H 0.04 2.01 7.30 -2.39 -0.02 1.99 16 28 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.04 2.12 6.27 -2.39 -0.01 2.10 16 30 H 0.04 1.60 7.04 -2.39 -0.02 1.58 16 31 H 0.26 15.76 6.04 -92.71 -0.56 15.20 16 32 H 0.33 13.93 6.43 -89.70 -0.58 13.36 16 33 H 0.03 1.03 6.94 -2.39 -0.02 1.02 16 34 H 0.06 2.27 8.08 -2.38 -0.02 2.25 16 35 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.14 2.86 5.90 -2.91 -0.02 2.84 16 37 H 0.06 0.84 7.39 -2.39 -0.02 0.83 16 38 H 0.08 0.88 6.43 -2.39 -0.02 0.87 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.81 6.43 -2.39 -0.02 0.79 16 42 H 0.06 0.78 7.39 -2.39 -0.02 0.76 16 43 H 0.06 0.95 7.51 -2.39 -0.02 0.93 16 44 H 0.06 0.95 7.51 -2.39 -0.02 0.94 16 45 H 0.06 0.63 6.43 -2.39 -0.02 0.62 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 48 H 0.14 2.53 7.10 -2.91 -0.02 2.51 16 49 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -63.35 368.70 4.31 -59.03 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.55 Total: 28.90 kcal Atomic # 6 Polarization: -56.08 SS G_CDS: 4.56 Total: -51.52 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -2.84 Total: -89.38 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -63.35 4.31 -59.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194942591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.446 kcal (2) G-P(sol) polarization free energy of solvation -63.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds