Wall clock time and date at job start Tue Mar 31 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46910 * 2 1 4 4 H 1.09001 * 109.47170 * 174.08884 * 3 2 1 5 5 C 1.50702 * 109.47561 * 54.08604 * 3 2 1 6 6 H 1.07999 * 119.99778 * 239.99889 * 5 3 2 7 7 C 1.37874 * 120.00131 * 59.99743 * 5 3 2 8 8 N 1.31523 * 119.99826 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00275 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46821 * 90.00329 * 9 7 5 11 11 H 1.48501 * 109.47100 * 209.99967 * 9 7 5 12 12 H 1.48501 * 109.46822 * 330.00232 * 9 7 5 13 13 N 1.46899 * 109.46974 * 294.08304 * 3 2 1 14 14 C 1.46897 * 111.00317 * 275.74433 * 13 3 2 15 15 C 1.50696 * 109.47564 * 176.25715 * 14 13 3 16 16 C 1.38240 * 119.99599 * 89.99985 * 15 14 13 17 17 C 1.38237 * 119.99628 * 180.28206 * 16 15 14 18 18 C 1.38231 * 120.00045 * 359.46416 * 17 16 15 19 19 C 1.50705 * 120.00083 * 180.28171 * 18 17 16 20 20 C 1.52997 * 109.47142 * 120.27802 * 19 18 17 21 21 C 1.53001 * 109.47218 * 240.27899 * 19 18 17 22 22 C 1.53003 * 109.47076 * 0.27429 * 19 18 17 23 23 C 1.52995 * 109.47133 * 180.02562 * 22 19 18 24 24 C 1.38235 * 120.00228 * 0.56059 * 18 17 16 25 25 C 1.38233 * 120.00316 * 270.02588 * 15 14 13 26 26 H 1.09000 * 109.47332 * 298.55791 * 1 2 3 27 27 H 1.08993 * 109.46991 * 58.56314 * 1 2 3 28 28 H 1.09004 * 109.46979 * 178.55986 * 1 2 3 29 29 H 1.09001 * 109.47144 * 239.99275 * 2 1 3 30 30 H 1.09005 * 109.46997 * 119.99583 * 2 1 3 31 31 H 0.97003 * 119.99735 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00147 * 39.70372 * 13 3 2 33 33 H 1.09002 * 109.46850 * 56.25506 * 14 13 3 34 34 H 1.09003 * 109.46885 * 296.26296 * 14 13 3 35 35 H 1.07995 * 120.00216 * 0.02562 * 16 15 14 36 36 H 1.08003 * 120.00159 * 179.72368 * 17 16 15 37 37 H 1.09003 * 109.47415 * 59.99969 * 20 19 18 38 38 H 1.08998 * 109.47092 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47255 * 299.99714 * 20 19 18 40 40 H 1.09003 * 109.47439 * 59.99684 * 21 19 18 41 41 H 1.08998 * 109.47300 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.47215 * 300.00083 * 21 19 18 43 43 H 1.08994 * 109.47235 * 300.00205 * 22 19 18 44 44 H 1.08999 * 109.46587 * 60.00157 * 22 19 18 45 45 H 1.09007 * 109.47208 * 300.00444 * 23 22 19 46 46 H 1.09000 * 109.47644 * 59.99794 * 23 22 19 47 47 H 1.08995 * 109.47506 * 180.02562 * 23 22 19 48 48 H 1.07997 * 120.00533 * 179.71911 * 24 18 17 49 49 H 1.07996 * 119.99987 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1058 5 6 1.4217 2.1940 1.1507 6 1 0.8148 3.0671 0.9616 7 6 1.6307 1.7668 2.4448 8 7 2.3701 0.7038 2.6751 9 14 0.8638 2.6979 3.8712 10 1 -0.4783 2.1343 4.1657 11 1 1.7296 2.5670 5.0705 12 1 0.7302 4.1324 3.5111 13 7 1.6703 2.0925 -1.2644 14 6 2.6516 1.7944 -2.3162 15 6 2.1926 2.3999 -3.6176 16 6 2.5700 3.6870 -3.9522 17 6 2.1442 4.2445 -5.1433 18 6 1.3503 3.5110 -6.0050 19 6 0.8914 4.1165 -7.3065 20 6 1.4011 3.2666 -8.4721 21 6 -0.6377 4.1601 -7.3376 22 6 1.4447 5.5375 -7.4311 23 6 0.9783 6.1524 -8.7520 24 6 0.9726 2.2240 -5.6703 25 6 1.3940 1.6684 -4.4767 26 1 -0.3634 0.4913 0.9026 27 1 -0.3633 0.5360 -0.8768 28 1 -0.3633 -1.0274 -0.0258 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.5175 0.4035 3.5856 32 1 0.7407 1.8242 -1.5507 33 1 2.7447 0.7145 -2.4307 34 1 3.6186 2.2153 -2.0406 35 1 3.1939 4.2585 -3.2811 36 1 2.4352 5.2517 -5.4027 37 1 1.0069 2.2542 -8.3834 38 1 1.0688 3.7043 -9.4135 39 1 2.4904 3.2356 -8.4501 40 1 -1.0009 4.7655 -6.5071 41 1 -0.9696 4.5985 -8.2787 42 1 -1.0320 3.1478 -7.2488 43 1 1.0815 6.1429 -6.6006 44 1 2.5340 5.5064 -7.4089 45 1 1.3411 5.5471 -9.5828 46 1 -0.1111 6.1835 -8.7739 47 1 1.3728 7.1646 -8.8410 48 1 0.3486 1.6525 -6.3414 49 1 1.0992 0.6628 -4.2153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194942592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:06 Heat of formation + Delta-G solvation = -2.809531 kcal Electronic energy + Delta-G solvation = -23127.606330 eV Core-core repulsion = 20053.306206 eV Total energy + Delta-G solvation = -3074.300123 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.94464 -37.46713 -36.09418 -32.91920 -31.47150 -30.96378 -30.17468 -28.97987 -27.43172 -26.50987 -24.99026 -23.77605 -23.14705 -21.92112 -21.08345 -19.25342 -18.79634 -16.77094 -16.02681 -15.27136 -14.98682 -14.90935 -14.71784 -14.52223 -13.90244 -13.71725 -13.62458 -13.35151 -13.28501 -12.89748 -12.50272 -12.37486 -12.19193 -12.15465 -11.98768 -11.84903 -11.57481 -11.35267 -11.27712 -11.07391 -10.90000 -10.79765 -10.70243 -10.51951 -10.39370 -10.32434 -9.95274 -9.78490 -9.53330 -8.95693 -8.66090 -8.32695 -8.29121 -7.16650 -5.95410 -3.96746 1.58675 1.66406 3.33773 3.40572 3.45376 3.97715 4.47198 4.50176 4.56407 4.78956 5.10520 5.15866 5.17875 5.21428 5.22469 5.29754 5.36328 5.40869 5.51643 5.58187 5.65441 5.71436 5.72100 5.76873 5.83386 5.84751 5.90382 5.96254 6.06285 6.17872 6.20352 6.22171 6.33851 6.35528 6.40094 6.40253 6.58873 6.69511 6.80502 6.91392 7.00419 7.25653 7.29762 7.31820 7.52356 7.71952 7.91618 8.30546 8.57633 8.65112 9.09140 9.66856 11.11711 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.027277 B = 0.003016 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.269817 B = 9282.566213 C = 9620.546909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.094 3.906 15 C -0.070 4.070 16 C -0.097 4.097 17 C -0.124 4.124 18 C -0.082 4.082 19 C -0.022 4.022 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.116 4.116 23 C -0.156 4.156 24 C -0.117 4.117 25 C -0.115 4.115 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.022 0.978 29 H 0.010 0.990 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.327 0.673 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.114 0.886 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 5.114 -21.417 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.035 4.035 15 C -0.071 4.071 16 C -0.116 4.116 17 C -0.142 4.142 18 C -0.082 4.082 19 C -0.022 4.022 20 C -0.196 4.196 21 C -0.197 4.197 22 C -0.153 4.153 23 C -0.213 4.213 24 C -0.135 4.135 25 C -0.134 4.134 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.132 0.868 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.849 5.614 -21.076 21.890 hybrid contribution -0.601 -0.628 0.757 1.153 sum -2.450 4.986 -20.319 21.065 Atomic orbital electron populations 1.21562 0.97679 0.97951 1.01271 1.22106 0.95039 1.01194 1.00161 1.19224 0.96085 0.88630 0.85367 0.94927 1.21065 1.30351 1.11481 0.89716 0.92047 1.24911 0.95587 0.95204 0.98684 1.69891 1.39281 1.24232 1.20278 0.86576 0.78967 0.80406 0.81940 1.20878 1.21442 1.19897 1.60942 1.03799 1.63108 1.02990 1.20909 0.97327 0.96709 0.88575 1.20055 0.96805 0.94444 0.95746 1.21062 0.99728 0.94754 0.96051 1.21103 0.98835 0.99749 0.94473 1.19682 0.98498 0.94379 0.95645 1.19452 0.95603 0.94779 0.92383 1.21929 1.01170 0.99417 0.97091 1.21938 0.93996 1.02021 1.01745 1.21661 1.00666 0.95035 0.97943 1.21912 1.01475 1.00321 0.97625 1.20828 1.00681 0.95105 0.96924 1.21034 0.98200 0.99847 0.94304 0.91534 0.95192 0.95936 0.97109 0.88966 0.93155 0.85461 0.95514 0.91090 0.86018 0.86140 0.92595 0.92303 0.92611 0.92450 0.92315 0.92564 0.91564 0.91685 0.92516 0.92441 0.92972 0.86778 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.39 37.16 0.35 -2.40 16 2 C -0.15 -3.42 5.50 -26.73 -0.15 -3.57 16 3 C 0.21 5.32 2.33 -68.87 -0.16 5.16 16 4 H 0.03 0.90 7.86 -51.93 -0.41 0.49 16 5 C -0.49 -13.27 7.35 -34.44 -0.25 -13.52 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -25.40 11.39 55.43 0.63 -24.77 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -14.53 6.24 -109.22 -0.68 -15.21 16 14 C 0.09 1.73 5.61 -4.98 -0.03 1.70 16 15 C -0.07 -1.12 5.35 -104.62 -0.56 -1.68 16 16 C -0.10 -1.46 9.70 -39.58 -0.38 -1.84 16 17 C -0.12 -1.60 8.98 -39.58 -0.36 -1.96 16 18 C -0.08 -0.99 4.76 -104.62 -0.50 -1.49 16 19 C -0.02 -0.21 0.63 -155.66 -0.10 -0.31 16 20 C -0.14 -1.18 7.93 37.16 0.29 -0.89 16 21 C -0.14 -1.26 7.93 37.16 0.29 -0.96 16 22 C -0.12 -1.00 3.65 -26.73 -0.10 -1.09 16 23 C -0.16 -1.12 9.21 37.15 0.34 -0.77 16 24 C -0.12 -1.49 8.71 -39.58 -0.34 -1.84 16 25 C -0.12 -1.67 9.70 -39.58 -0.38 -2.06 16 26 H 0.07 1.58 7.05 -51.93 -0.37 1.21 16 27 H 0.03 0.59 6.42 -51.93 -0.33 0.25 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.23 7.24 -51.93 -0.38 -0.15 16 30 H 0.09 2.43 6.25 -51.93 -0.32 2.11 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 32 H 0.33 6.84 6.55 -39.29 -0.26 6.58 16 33 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 34 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 35 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.12 1.33 5.90 -52.48 -0.31 1.02 16 37 H 0.05 0.47 7.39 -51.93 -0.38 0.09 16 38 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 42 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 43 H 0.07 0.60 7.50 -51.93 -0.39 0.21 16 44 H 0.06 0.56 7.53 -51.93 -0.39 0.17 16 45 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 46 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.11 1.24 7.10 -52.49 -0.37 0.87 16 49 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -27.91 370.40 -10.12 -38.03 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.50 Total: 5.97 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -2.12 Total: -26.04 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.05 Total: -39.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.91 -10.12 -38.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194942592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.219 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds