Wall clock time and date at job start Tue Mar 31 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46910 * 2 1 4 4 H 1.09001 * 109.47170 * 174.08884 * 3 2 1 5 5 C 1.50702 * 109.47561 * 54.08604 * 3 2 1 6 6 H 1.07999 * 119.99778 * 239.99889 * 5 3 2 7 7 C 1.37874 * 120.00131 * 59.99743 * 5 3 2 8 8 N 1.31523 * 119.99826 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00275 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46821 * 90.00329 * 9 7 5 11 11 H 1.48501 * 109.47100 * 209.99967 * 9 7 5 12 12 H 1.48501 * 109.46822 * 330.00232 * 9 7 5 13 13 N 1.46899 * 109.46974 * 294.08304 * 3 2 1 14 14 C 1.46897 * 111.00317 * 275.74433 * 13 3 2 15 15 C 1.50696 * 109.47564 * 176.25715 * 14 13 3 16 16 C 1.38240 * 119.99599 * 89.99985 * 15 14 13 17 17 C 1.38237 * 119.99628 * 180.28206 * 16 15 14 18 18 C 1.38231 * 120.00045 * 359.46416 * 17 16 15 19 19 C 1.50705 * 120.00083 * 180.28171 * 18 17 16 20 20 C 1.52997 * 109.47142 * 120.27802 * 19 18 17 21 21 C 1.53001 * 109.47218 * 240.27899 * 19 18 17 22 22 C 1.53003 * 109.47076 * 0.27429 * 19 18 17 23 23 C 1.52995 * 109.47133 * 180.02562 * 22 19 18 24 24 C 1.38235 * 120.00228 * 0.56059 * 18 17 16 25 25 C 1.38233 * 120.00316 * 270.02588 * 15 14 13 26 26 H 1.09000 * 109.47332 * 298.55791 * 1 2 3 27 27 H 1.08993 * 109.46991 * 58.56314 * 1 2 3 28 28 H 1.09004 * 109.46979 * 178.55986 * 1 2 3 29 29 H 1.09001 * 109.47144 * 239.99275 * 2 1 3 30 30 H 1.09005 * 109.46997 * 119.99583 * 2 1 3 31 31 H 0.97003 * 119.99735 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00147 * 39.70372 * 13 3 2 33 33 H 1.09002 * 109.46850 * 56.25506 * 14 13 3 34 34 H 1.09003 * 109.46885 * 296.26296 * 14 13 3 35 35 H 1.07995 * 120.00216 * 0.02562 * 16 15 14 36 36 H 1.08003 * 120.00159 * 179.72368 * 17 16 15 37 37 H 1.09003 * 109.47415 * 59.99969 * 20 19 18 38 38 H 1.08998 * 109.47092 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47255 * 299.99714 * 20 19 18 40 40 H 1.09003 * 109.47439 * 59.99684 * 21 19 18 41 41 H 1.08998 * 109.47300 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.47215 * 300.00083 * 21 19 18 43 43 H 1.08994 * 109.47235 * 300.00205 * 22 19 18 44 44 H 1.08999 * 109.46587 * 60.00157 * 22 19 18 45 45 H 1.09007 * 109.47208 * 300.00444 * 23 22 19 46 46 H 1.09000 * 109.47644 * 59.99794 * 23 22 19 47 47 H 1.08995 * 109.47506 * 180.02562 * 23 22 19 48 48 H 1.07997 * 120.00533 * 179.71911 * 24 18 17 49 49 H 1.07996 * 119.99987 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1058 5 6 1.4217 2.1940 1.1507 6 1 0.8148 3.0671 0.9616 7 6 1.6307 1.7668 2.4448 8 7 2.3701 0.7038 2.6751 9 14 0.8638 2.6979 3.8712 10 1 -0.4783 2.1343 4.1657 11 1 1.7296 2.5670 5.0705 12 1 0.7302 4.1324 3.5111 13 7 1.6703 2.0925 -1.2644 14 6 2.6516 1.7944 -2.3162 15 6 2.1926 2.3999 -3.6176 16 6 2.5700 3.6870 -3.9522 17 6 2.1442 4.2445 -5.1433 18 6 1.3503 3.5110 -6.0050 19 6 0.8914 4.1165 -7.3065 20 6 1.4011 3.2666 -8.4721 21 6 -0.6377 4.1601 -7.3376 22 6 1.4447 5.5375 -7.4311 23 6 0.9783 6.1524 -8.7520 24 6 0.9726 2.2240 -5.6703 25 6 1.3940 1.6684 -4.4767 26 1 -0.3634 0.4913 0.9026 27 1 -0.3633 0.5360 -0.8768 28 1 -0.3633 -1.0274 -0.0258 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.5175 0.4035 3.5856 32 1 0.7407 1.8242 -1.5507 33 1 2.7447 0.7145 -2.4307 34 1 3.6186 2.2153 -2.0406 35 1 3.1939 4.2585 -3.2811 36 1 2.4352 5.2517 -5.4027 37 1 1.0069 2.2542 -8.3834 38 1 1.0688 3.7043 -9.4135 39 1 2.4904 3.2356 -8.4501 40 1 -1.0009 4.7655 -6.5071 41 1 -0.9696 4.5985 -8.2787 42 1 -1.0320 3.1478 -7.2488 43 1 1.0815 6.1429 -6.6006 44 1 2.5340 5.5064 -7.4089 45 1 1.3411 5.5471 -9.5828 46 1 -0.1111 6.1835 -8.7739 47 1 1.3728 7.1646 -8.8410 48 1 0.3486 1.6525 -6.3414 49 1 1.0992 0.6628 -4.2153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194942592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:05 Heat of formation + Delta-G solvation = -15.711417 kcal Electronic energy + Delta-G solvation = -23128.165798 eV Core-core repulsion = 20053.306206 eV Total energy + Delta-G solvation = -3074.859591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92711 -38.74320 -37.54718 -34.63752 -33.00288 -32.10785 -31.32950 -30.12860 -28.30088 -28.09688 -26.23847 -25.17153 -24.73096 -22.96908 -22.18827 -21.17771 -19.62842 -18.33301 -17.45612 -16.78692 -16.51438 -16.14621 -15.78344 -15.55654 -15.33879 -14.88459 -14.69112 -14.51111 -14.33907 -14.26977 -14.21540 -13.77662 -13.46912 -13.19226 -12.92557 -12.83217 -12.81067 -12.68547 -12.59816 -12.46422 -12.23969 -12.09108 -12.00679 -11.84709 -11.68940 -11.45657 -11.43326 -11.29644 -11.11926 -10.96787 -10.44097 -9.74449 -9.42506 -8.91165 -8.05906 -6.14533 0.48204 0.57915 1.42254 1.43653 1.53979 2.45357 2.87965 3.22718 3.68971 3.78110 3.85110 4.03178 4.11091 4.15772 4.20326 4.40979 4.48049 4.52538 4.56240 4.58888 4.59957 4.65086 4.68897 4.77799 4.81868 4.85626 4.88516 5.02113 5.07779 5.09265 5.14979 5.18111 5.21236 5.24974 5.29373 5.31245 5.35260 5.41369 5.51780 5.55826 5.65531 5.67516 5.73452 5.80733 5.81714 5.85798 6.18450 6.31080 6.67249 6.82899 6.98016 7.53260 8.99545 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.027277 B = 0.003016 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.269817 B = 9282.566213 C = 9620.546909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.221 3.779 4 H -0.003 1.003 5 C -0.500 4.500 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.680 5.680 14 C 0.101 3.899 15 C -0.091 4.091 16 C -0.111 4.111 17 C -0.125 4.125 18 C -0.076 4.076 19 C -0.021 4.021 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.153 4.153 24 C -0.116 4.116 25 C -0.122 4.122 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.062 0.938 31 H 0.259 0.741 32 H 0.331 0.669 33 H 0.026 0.974 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.137 0.863 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 5.720 -23.566 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.015 0.985 5 C -0.539 4.539 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.312 5.312 14 C -0.028 4.028 15 C -0.091 4.091 16 C -0.130 4.130 17 C -0.143 4.143 18 C -0.076 4.076 19 C -0.021 4.021 20 C -0.194 4.194 21 C -0.196 4.196 22 C -0.154 4.154 23 C -0.210 4.210 24 C -0.134 4.134 25 C -0.140 4.140 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.150 0.850 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.155 0.845 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.260 6.224 -23.241 24.280 hybrid contribution -0.133 -0.787 1.327 1.549 sum -3.393 5.437 -21.914 22.832 Atomic orbital electron populations 1.21440 0.95915 0.99356 1.00795 1.21946 0.96530 0.99951 0.99352 1.18972 0.93691 0.89590 0.86532 0.98514 1.21264 1.30352 1.11380 0.90930 0.93119 1.25594 0.95969 0.95936 1.00930 1.70019 1.40145 1.25299 1.20683 0.85652 0.78365 0.79195 0.79000 1.20094 1.21160 1.19714 1.60804 1.04644 1.62894 1.02811 1.20807 0.96120 0.96766 0.89075 1.19853 0.98843 0.95285 0.95134 1.21130 1.00251 0.94580 0.97046 1.21317 0.98630 1.00620 0.93750 1.20069 0.97052 0.94060 0.96425 1.19514 0.96084 0.95288 0.91220 1.21923 1.00836 0.99402 0.97284 1.21939 0.93319 1.02070 1.02290 1.21657 1.00547 0.94477 0.98702 1.21891 1.01744 1.00607 0.96801 1.21082 1.00412 0.95485 0.96449 1.21140 0.98012 1.00069 0.94796 0.93965 0.93475 0.93688 0.95603 0.91958 0.93174 0.84982 0.95613 0.92284 0.86637 0.84394 0.92449 0.90625 0.93127 0.93509 0.90569 0.92463 0.92234 0.91863 0.91804 0.92028 0.92501 0.84535 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.39 71.98 0.68 -4.32 16 2 C -0.14 -6.57 5.50 30.59 0.17 -6.40 16 3 C 0.22 11.26 2.33 44.17 0.10 11.36 16 4 H 0.00 -0.18 7.86 -2.39 -0.02 -0.20 16 5 C -0.50 -27.81 7.35 25.60 0.19 -27.62 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.77 5.22 84.65 0.44 1.21 16 8 N -0.92 -53.22 11.39 21.45 0.24 -52.98 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.68 -29.73 6.24 -499.48 -3.12 -32.85 16 14 C 0.10 3.82 5.61 85.56 0.48 4.30 16 15 C -0.09 -2.91 5.35 -19.87 -0.11 -3.02 16 16 C -0.11 -3.34 9.70 22.27 0.22 -3.12 16 17 C -0.13 -3.11 8.98 22.27 0.20 -2.91 16 18 C -0.08 -1.69 4.76 -19.87 -0.09 -1.78 16 19 C -0.02 -0.34 0.63 -52.93 -0.03 -0.38 16 20 C -0.14 -1.93 7.93 71.98 0.57 -1.35 16 21 C -0.14 -2.11 7.93 71.98 0.57 -1.54 16 22 C -0.12 -1.73 3.65 30.59 0.11 -1.62 16 23 C -0.15 -1.75 9.21 71.98 0.66 -1.09 16 24 C -0.12 -2.73 8.71 22.27 0.19 -2.54 16 25 C -0.12 -3.41 9.70 22.27 0.22 -3.19 16 26 H 0.04 1.98 7.05 -2.39 -0.02 1.97 16 27 H 0.05 1.81 6.42 -2.39 -0.02 1.79 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.03 1.12 7.24 -2.39 -0.02 1.10 16 30 H 0.06 3.36 6.25 -2.38 -0.01 3.34 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.33 13.84 6.55 -89.70 -0.59 13.25 16 33 H 0.03 0.97 7.18 -2.39 -0.02 0.95 16 34 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 35 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.14 2.86 5.90 -2.91 -0.02 2.85 16 37 H 0.06 0.79 7.39 -2.39 -0.02 0.78 16 38 H 0.07 0.82 6.43 -2.39 -0.02 0.81 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.90 6.43 -2.39 -0.02 0.88 16 42 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 43 H 0.06 0.97 7.50 -2.39 -0.02 0.95 16 44 H 0.06 0.96 7.53 -2.39 -0.02 0.95 16 45 H 0.06 0.65 6.43 -2.38 -0.02 0.63 16 46 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.14 2.57 7.10 -2.91 -0.02 2.54 16 49 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -60.29 370.40 4.04 -56.25 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.33 Total: 27.20 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 4.57 Total: -44.02 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.87 Total: -85.83 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.29 4.04 -56.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194942592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.540 kcal (2) G-P(sol) polarization free energy of solvation -60.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds