Wall clock time and date at job start Tue Mar 31 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 S 1.65609 * 119.99795 * 94.99975 * 12 2 1 14 14 O 1.42104 * 106.39806 * 178.54309 * 13 12 2 15 15 O 1.42100 * 106.39979 * 311.46308 * 13 12 2 16 16 C 1.76195 * 107.21769 * 65.00337 * 13 12 2 17 17 C 1.38236 * 119.60034 * 269.72464 * 16 13 12 18 18 C 1.38614 * 119.16937 * 179.79574 * 17 16 13 19 19 C 1.38775 * 118.41307 * 0.47350 * 18 17 16 20 20 Cl 1.73604 * 120.43327 * 179.77128 * 19 18 17 21 21 C 1.38310 * 119.13601 * 359.74744 * 19 18 17 22 22 N 1.31851 * 119.60532 * 89.99655 * 16 13 12 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 0.96993 * 119.99985 * 275.00012 * 12 2 1 28 28 H 1.07995 * 120.41685 * 0.02562 * 17 16 13 29 29 H 1.08001 * 120.79067 * 180.19598 * 18 17 16 30 30 H 1.07999 * 119.62527 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 16 2.4123 0.1772 -2.5505 14 8 2.8777 -0.7636 -3.5084 15 8 1.3247 1.0593 -2.7921 16 6 3.7928 1.1910 -2.1371 17 6 3.5811 2.4625 -1.6379 18 6 4.6735 3.2508 -1.3116 19 6 5.9452 2.7318 -1.5101 20 17 7.3503 3.6758 -1.1250 21 6 6.0785 1.4523 -2.0182 22 7 5.0155 0.7297 -2.3128 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7082 1.1610 3.4844 27 1 2.1111 -1.6561 -1.1948 28 1 2.5770 2.8356 -1.5002 29 1 4.5383 4.2469 -0.9167 30 1 7.0644 1.0404 -2.1754 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196266432.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:36 Heat of formation + Delta-G solvation = -48.223128 kcal Electronic energy + Delta-G solvation = -18954.707049 eV Core-core repulsion = 15709.999377 eV Total energy + Delta-G solvation = -3244.707672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23292 -36.93283 -36.83367 -35.53063 -35.43193 -32.65675 -32.28913 -31.39247 -28.36514 -25.29503 -24.24117 -23.89761 -21.04361 -19.43056 -18.02482 -17.41160 -16.94831 -16.59713 -16.22045 -15.29106 -14.87975 -14.60525 -14.45794 -13.72834 -13.46373 -12.98513 -12.72410 -12.35984 -12.27872 -11.81529 -11.72175 -11.68192 -11.59271 -11.22703 -11.09437 -11.06568 -10.61478 -10.37052 -10.19698 -10.02709 -9.74792 -9.37331 -9.27414 -8.71897 -8.40706 -6.22196 -4.30387 0.32920 0.84663 1.00064 1.70189 3.18104 3.18787 3.27214 3.30897 3.58540 4.09233 4.17972 4.28224 4.48657 4.64429 4.85834 5.09959 5.20384 5.39718 5.54775 5.68913 6.17461 6.19606 6.73149 6.96046 7.00132 7.45040 7.49116 7.62563 7.71577 7.94748 8.17915 8.73544 9.36768 10.83371 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.006749 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.971069 B = 4147.477758 C = 5504.533854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.272 3.728 3 H 0.038 0.962 4 C -0.527 4.527 5 H 0.066 0.934 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -1.091 6.091 13 S 2.697 3.303 14 O -0.957 6.957 15 O -0.951 6.951 16 C -0.433 4.433 17 C -0.063 4.063 18 C -0.081 4.081 19 C -0.045 4.045 20 Cl -0.050 7.050 21 C 0.090 3.910 22 N -0.374 5.374 23 H 0.034 0.966 24 H 0.027 0.973 25 H 0.093 0.907 26 H 0.264 0.736 27 H 0.414 0.586 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 5.031 -6.238 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.168 3.832 3 H 0.056 0.944 4 C -0.566 4.566 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.207 1.207 12 N -0.854 5.854 13 S 2.779 3.221 14 O -0.947 6.947 15 O -0.941 6.941 16 C -0.650 4.650 17 C -0.084 4.084 18 C -0.108 4.108 19 C -0.074 4.074 20 Cl -0.021 7.021 21 C -0.072 4.072 22 N -0.083 5.083 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.249 0.751 28 H 0.183 0.817 29 H 0.173 0.827 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.544 4.598 -7.201 11.397 hybrid contribution 1.070 0.558 1.940 2.284 sum 8.614 5.155 -5.261 11.334 Atomic orbital electron populations 1.22241 0.97703 1.00254 1.01611 1.18597 0.91735 0.91944 0.80957 0.94402 1.21338 1.32029 1.13361 0.89915 0.91585 1.24910 0.94770 0.95000 0.99098 1.69873 1.35997 1.22624 1.23934 0.86427 0.78714 0.79690 0.82540 1.19632 1.20956 1.20747 1.55552 1.79958 1.18657 1.31266 1.02183 0.73074 0.73504 0.73341 1.93547 1.81760 1.60527 1.58877 1.93611 1.48728 1.67609 1.84122 1.34148 1.12922 1.08594 1.09294 1.22127 1.01481 0.92719 0.92032 1.21661 0.90312 1.01345 0.97488 1.22373 0.89631 0.94583 1.00818 1.98393 1.39486 1.71810 1.92390 1.23070 0.99079 0.89331 0.95685 1.67917 0.97171 1.33330 1.09921 0.94642 0.95417 0.88877 0.92549 0.75124 0.81679 0.82714 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.29 37.16 0.35 -3.28 16 2 C 0.27 6.23 2.76 -69.08 -0.19 6.04 16 3 H 0.04 0.89 7.22 -51.93 -0.38 0.52 16 4 C -0.53 -13.23 8.76 -34.44 -0.30 -13.54 16 5 H 0.07 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.27 11.32 55.43 0.63 -22.64 16 8 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 N -1.09 -21.48 5.46 -5.88 -0.03 -21.51 16 13 S 2.70 50.43 5.71 -107.50 -0.61 49.82 16 14 O -0.96 -19.34 17.85 -57.17 -1.02 -20.36 16 15 O -0.95 -18.96 16.51 -57.17 -0.94 -19.90 16 16 C -0.43 -7.60 6.70 -17.54 -0.12 -7.71 16 17 C -0.06 -0.98 8.93 -39.44 -0.35 -1.33 16 18 C -0.08 -1.07 9.98 -39.24 -0.39 -1.47 16 19 C -0.04 -0.59 6.34 -39.36 -0.25 -0.84 16 20 Cl -0.05 -0.54 28.99 -51.86 -1.50 -2.04 16 21 C 0.09 1.27 10.99 -17.51 -0.19 1.08 16 22 N -0.37 -6.42 10.11 -12.42 -0.13 -6.54 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 25 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 26 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.41 7.46 8.83 -34.48 -0.30 7.15 16 28 H 0.17 2.39 7.60 -52.49 -0.40 1.99 16 29 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 293.62 15.07 4.42 4.42 Total: -1.00 -29.97 293.62 -8.36 -38.33 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.60 Total: 4.88 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -1.55 Total: -19.47 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.47 Total: -50.70 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.96 Total: -40.26 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.61 Total: 49.82 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.97 -8.36 -38.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196266432.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.896 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds