Wall clock time and date at job start Tue Mar 31 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 S 1.65609 * 119.99795 * 94.99975 * 12 2 1 14 14 O 1.42104 * 106.39806 * 178.54309 * 13 12 2 15 15 O 1.42100 * 106.39979 * 311.46308 * 13 12 2 16 16 C 1.76195 * 107.21769 * 65.00337 * 13 12 2 17 17 C 1.38236 * 119.60034 * 269.72464 * 16 13 12 18 18 C 1.38614 * 119.16937 * 179.79574 * 17 16 13 19 19 C 1.38775 * 118.41307 * 0.47350 * 18 17 16 20 20 Cl 1.73604 * 120.43327 * 179.77128 * 19 18 17 21 21 C 1.38310 * 119.13601 * 359.74744 * 19 18 17 22 22 N 1.31851 * 119.60532 * 89.99655 * 16 13 12 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 0.96993 * 119.99985 * 275.00012 * 12 2 1 28 28 H 1.07995 * 120.41685 * 0.02562 * 17 16 13 29 29 H 1.08001 * 120.79067 * 180.19598 * 18 17 16 30 30 H 1.07999 * 119.62527 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 16 2.4123 0.1772 -2.5505 14 8 2.8777 -0.7636 -3.5084 15 8 1.3247 1.0593 -2.7921 16 6 3.7928 1.1910 -2.1371 17 6 3.5811 2.4625 -1.6379 18 6 4.6735 3.2508 -1.3116 19 6 5.9452 2.7318 -1.5101 20 17 7.3503 3.6758 -1.1250 21 6 6.0785 1.4523 -2.0182 22 7 5.0155 0.7297 -2.3128 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7082 1.1610 3.4844 27 1 2.1111 -1.6561 -1.1948 28 1 2.5770 2.8356 -1.5002 29 1 4.5383 4.2469 -0.9167 30 1 7.0644 1.0404 -2.1754 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196266432.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:36 Heat of formation + Delta-G solvation = -69.998191 kcal Electronic energy + Delta-G solvation = -18955.651287 eV Core-core repulsion = 15709.999377 eV Total energy + Delta-G solvation = -3245.651910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37711 -38.39198 -37.90669 -37.27997 -36.98987 -34.14459 -33.79270 -32.54246 -30.14363 -27.22679 -25.42152 -25.04080 -22.84836 -20.84438 -19.48530 -18.94469 -18.17825 -17.93024 -17.73284 -17.07380 -16.29266 -15.99978 -15.63698 -15.35572 -14.62322 -14.50962 -14.17730 -13.98203 -13.56068 -13.36992 -13.30513 -13.17498 -13.01011 -12.84971 -12.79430 -12.37354 -12.29231 -12.21806 -12.02425 -11.19434 -11.09698 -10.91080 -10.61478 -10.46419 -10.14617 -8.14974 -6.28502 -0.88528 -0.58033 -0.10589 0.68678 1.42595 1.46877 1.56095 1.89504 2.20177 2.44395 2.69476 2.93254 3.15004 3.47743 3.51069 3.72629 3.86329 4.30272 4.41445 4.48013 4.64070 4.91685 5.09561 5.11716 5.17757 5.59521 5.75437 6.02522 6.07131 6.28745 6.38605 6.81478 7.41167 8.90140 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.006749 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.971069 B = 4147.477758 C = 5504.533854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.274 3.726 3 H 0.031 0.969 4 C -0.540 4.540 5 H 0.064 0.936 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.280 1.280 12 N -1.093 6.093 13 S 2.715 3.285 14 O -0.975 6.975 15 O -0.969 6.969 16 C -0.456 4.456 17 C -0.074 4.074 18 C -0.078 4.078 19 C -0.039 4.039 20 Cl -0.022 7.022 21 C 0.087 3.913 22 N -0.402 5.402 23 H 0.038 0.962 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.266 0.734 27 H 0.420 0.580 28 H 0.169 0.831 29 H 0.187 0.813 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.375 5.660 -5.742 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.169 3.831 3 H 0.049 0.951 4 C -0.580 4.580 5 H 0.083 0.917 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.855 5.855 13 S 2.801 3.199 14 O -0.965 6.965 15 O -0.958 6.958 16 C -0.674 4.674 17 C -0.095 4.095 18 C -0.105 4.105 19 C -0.068 4.068 20 Cl 0.007 6.993 21 C -0.076 4.076 22 N -0.112 5.112 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.255 0.745 28 H 0.187 0.813 29 H 0.204 0.796 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 9.071 5.193 -6.722 12.427 hybrid contribution 0.726 0.462 1.763 1.962 sum 9.798 5.654 -4.959 12.352 Atomic orbital electron populations 1.22152 0.97895 1.00251 1.00991 1.18384 0.91580 0.91669 0.81423 0.95131 1.21610 1.31987 1.13438 0.90928 0.91744 1.25572 0.95019 0.95646 1.01492 1.69969 1.36742 1.23569 1.24501 0.85557 0.78162 0.78701 0.79514 1.19379 1.20769 1.20564 1.55386 1.80505 1.19133 1.30511 1.01361 0.72959 0.73002 0.72583 1.93515 1.82141 1.61512 1.59358 1.93577 1.50168 1.67756 1.84335 1.33606 1.12703 1.09278 1.11831 1.22292 1.02646 0.92464 0.92142 1.22032 0.89714 1.02317 0.96417 1.22466 0.90544 0.94466 0.99360 1.98409 1.37896 1.70974 1.91987 1.23592 0.99428 0.89719 0.94831 1.67860 0.97576 1.34577 1.11149 0.94311 0.94648 0.90787 0.92449 0.74468 0.81309 0.79584 0.78027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.05 9.29 71.98 0.67 -6.38 16 2 C 0.27 12.64 2.76 44.24 0.12 12.76 16 3 H 0.03 1.46 7.22 -2.39 -0.02 1.44 16 4 C -0.54 -27.01 8.76 25.60 0.22 -26.79 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.02 1.19 5.30 84.66 0.45 1.64 16 7 N -0.91 -47.63 11.32 21.45 0.24 -47.38 16 8 Si 0.95 40.55 29.54 68.60 2.03 42.58 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 N -1.09 -43.24 5.46 -172.53 -0.94 -44.19 16 13 S 2.72 102.24 5.71 -56.49 -0.32 101.92 16 14 O -0.98 -39.66 17.85 -128.00 -2.29 -41.95 16 15 O -0.97 -38.93 16.51 -128.00 -2.11 -41.04 16 16 C -0.46 -15.84 6.70 84.69 0.57 -15.27 16 17 C -0.07 -2.25 8.93 22.36 0.20 -2.05 16 18 C -0.08 -1.90 9.98 22.49 0.22 -1.67 16 19 C -0.04 -0.92 6.34 22.42 0.14 -0.78 16 20 Cl -0.02 -0.40 28.99 -2.72 -0.08 -0.48 16 21 C 0.09 2.27 10.99 84.70 0.93 3.20 16 22 N -0.40 -13.43 10.11 -193.22 -1.95 -15.39 16 23 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.03 1.52 7.64 -2.39 -0.02 1.50 16 25 H 0.07 3.70 6.07 -2.38 -0.01 3.68 16 26 H 0.27 13.25 8.31 -92.70 -0.77 12.48 16 27 H 0.42 15.23 8.83 -96.75 -0.85 14.37 16 28 H 0.17 4.85 7.60 -2.91 -0.02 4.83 16 29 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.20 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -62.30 293.62 -1.56 -63.86 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.34 Total: 17.41 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.53 Total: -35.34 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -2.65 Total: -106.96 kcal Atomic # 8 Polarization: -78.59 SS G_CDS: -4.40 Total: -82.99 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 102.24 SS G_CDS: -0.32 Total: 101.92 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -62.30 -1.56 -63.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196266432.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.134 kcal (2) G-P(sol) polarization free energy of solvation -62.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds