Wall clock time and date at job start Tue Mar 31 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86795 * 119.99598 * 2 1 4 4 H 1.48501 * 109.46897 * 269.99675 * 3 2 1 5 5 H 1.48498 * 109.47771 * 29.99891 * 3 2 1 6 6 H 1.48501 * 109.47238 * 150.00392 * 3 2 1 7 7 C 1.37872 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47353 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.47282 * 179.97438 * 10 9 7 12 12 S 1.65595 * 119.99876 * 164.99994 * 11 10 9 13 13 O 1.42105 * 106.40149 * 178.54167 * 12 11 10 14 14 O 1.42098 * 106.40317 * 311.46040 * 12 11 10 15 15 C 1.76204 * 107.21987 * 65.00402 * 12 11 10 16 16 C 1.38192 * 119.60924 * 209.72718 * 15 12 11 17 17 C 1.38664 * 119.19040 * 179.77044 * 16 15 12 18 18 C 1.38611 * 118.43666 * 0.48817 * 17 16 15 19 19 C 1.38343 * 119.15071 * 359.75442 * 18 17 16 20 20 Cl 1.73602 * 119.63351 * 179.97438 * 19 18 17 21 21 N 1.31871 * 119.60975 * 29.99452 * 15 12 11 22 22 H 0.96996 * 120.00100 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47289 * 59.99216 * 9 7 2 24 24 H 1.09006 * 109.46936 * 300.00470 * 9 7 2 25 25 H 1.09006 * 109.47413 * 60.00106 * 10 9 7 26 26 H 1.08993 * 109.47590 * 299.99958 * 10 9 7 27 27 H 0.96997 * 120.00091 * 344.99966 * 11 10 9 28 28 H 1.08002 * 120.40282 * 359.97438 * 16 15 12 29 29 H 1.08001 * 120.77859 * 180.21710 * 17 16 15 30 30 H 1.08003 * 120.42147 * 179.76870 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5129 -4.9308 0.0045 12 16 2.2985 -6.3409 -0.3653 13 8 1.3366 -7.3798 -0.2438 14 8 3.0278 -6.0927 -1.5593 15 6 3.4937 -6.6191 0.8991 16 6 4.6589 -7.2992 0.5996 17 6 5.5957 -7.5091 1.6001 18 6 5.3199 -7.0341 2.8728 19 6 4.1297 -6.3664 3.0996 20 17 3.7713 -5.7667 4.6889 21 7 3.2635 -6.1806 2.1213 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5575 -0.8879 24 1 0.6248 -2.5563 0.8920 25 1 2.8721 -3.6035 0.8927 26 1 2.8720 -3.6051 -0.8872 27 1 0.5678 -4.9449 0.2222 28 1 4.8390 -7.6598 -0.4024 29 1 6.5165 -8.0343 1.3937 30 1 6.0253 -7.1831 3.6769 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198256056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:41 Heat of formation + Delta-G solvation = -51.674481 kcal Electronic energy + Delta-G solvation = -18366.030393 eV Core-core repulsion = 15121.173059 eV Total energy + Delta-G solvation = -3244.857334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.52333 -37.12098 -36.91797 -35.83306 -35.41929 -33.15082 -32.69957 -31.66349 -29.12745 -24.67754 -24.51204 -24.00140 -21.14611 -19.75534 -18.39877 -17.64144 -16.83111 -16.54369 -16.30900 -15.59516 -15.51471 -14.96014 -14.52761 -14.05788 -13.95014 -13.69734 -12.95217 -12.58200 -12.20423 -11.99903 -11.96434 -11.84186 -11.66877 -11.58634 -11.26644 -11.08336 -10.62771 -10.53066 -10.45955 -10.02800 -9.57828 -9.55711 -9.25504 -8.91678 -8.38534 -6.05808 -4.08978 0.14164 0.46704 0.64534 1.47224 2.90798 3.04762 3.30611 3.36930 3.40012 3.63507 4.09941 4.39088 4.42698 4.44486 4.64728 4.70828 4.82410 5.23593 5.31041 5.45739 5.76525 5.84116 6.23827 6.47794 6.74216 7.03403 7.41310 7.59383 7.68732 7.92909 8.30564 8.96551 9.55295 11.05641 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.005041 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.349920 B = 5552.963286 C = 6601.207684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.019 3.981 10 C 0.120 3.880 11 N -1.091 6.091 12 S 2.701 3.299 13 O -0.956 6.956 14 O -0.946 6.946 15 C -0.413 4.413 16 C -0.088 4.088 17 C -0.074 4.074 18 C -0.111 4.111 19 C 0.159 3.841 20 Cl -0.016 7.016 21 N -0.387 5.387 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.421 0.579 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -16.039 5.632 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.020 4.020 10 C -0.005 4.005 11 N -0.855 5.855 12 S 2.783 3.217 13 O -0.946 6.946 14 O -0.935 6.935 15 C -0.631 4.631 16 C -0.109 4.109 17 C -0.101 4.101 18 C -0.131 4.131 19 C -0.009 4.009 20 Cl 0.012 6.988 21 N -0.099 5.099 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.257 0.743 28 H 0.176 0.824 29 H 0.174 0.826 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.119 -15.970 5.213 19.611 hybrid contribution 1.249 0.745 0.915 1.718 sum 11.368 -15.225 6.128 19.964 Atomic orbital electron populations 1.69960 1.06050 1.26827 1.50250 1.24987 0.94871 0.99303 0.95064 0.86543 0.79776 0.83206 0.78170 1.20555 1.21194 1.19854 1.21070 0.93137 0.90518 1.51481 0.92370 1.19278 0.94032 0.90345 0.98342 1.21684 0.96132 0.82370 1.00278 1.55170 1.21372 1.21494 1.87453 1.02155 0.73135 0.73082 0.73301 1.93610 1.58523 1.55728 1.86719 1.93637 1.74085 1.85260 1.40563 1.34100 1.14311 1.06003 1.08650 1.22004 0.92417 0.94851 1.01622 1.21721 0.99590 0.97045 0.91698 1.22131 0.96161 0.95964 0.98890 1.21974 0.92211 0.97223 0.89519 1.98436 1.95246 1.86562 1.18512 1.67237 1.30303 1.14146 0.98180 0.92842 0.95494 0.95553 0.92892 0.91406 0.74326 0.82407 0.82586 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.47 5.11 -27.89 -0.14 0.33 16 10 C 0.12 2.41 6.16 -4.04 -0.02 2.39 16 11 N -1.09 -18.75 5.94 -10.61 -0.06 -18.81 16 12 S 2.70 42.68 5.70 -107.50 -0.61 42.07 16 13 O -0.96 -16.65 18.02 -57.17 -1.03 -17.68 16 14 O -0.95 -16.41 17.13 -57.17 -0.98 -17.39 16 15 C -0.41 -5.90 6.74 -17.55 -0.12 -6.02 16 16 C -0.09 -0.96 9.57 -39.44 -0.38 -1.34 16 17 C -0.07 -0.61 10.17 -39.29 -0.40 -1.01 16 18 C -0.11 -1.02 9.88 -39.40 -0.39 -1.41 16 19 C 0.16 2.03 7.27 -17.45 -0.13 1.90 16 20 Cl -0.02 -0.19 29.11 -51.86 -1.51 -1.70 16 21 N -0.39 -5.87 10.21 -9.57 -0.10 -5.97 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 27 H 0.42 6.71 8.65 -34.47 -0.30 6.42 16 28 H 0.16 1.32 7.94 -52.49 -0.42 0.91 16 29 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -33.89 300.67 -8.81 -42.70 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.77 Total: -0.30 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.99 Total: -18.26 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.58 Total: -50.23 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -2.01 Total: -35.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 42.68 SS G_CDS: -0.61 Total: 42.07 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.89 -8.81 -42.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198256056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.978 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds