Wall clock time and date at job start Tue Mar 31 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46923 * 2 1 4 4 C 1.50704 * 109.46857 * 119.99304 * 2 1 3 5 5 H 1.08003 * 119.99286 * 94.63268 * 4 2 1 6 6 C 1.37875 * 120.00446 * 274.62984 * 4 2 1 7 7 N 1.31513 * 119.99836 * 6.44952 * 6 4 2 8 8 Si 1.86797 * 120.00254 * 186.45125 * 6 4 2 9 9 H 1.48500 * 109.47319 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47070 * 300.00133 * 8 6 4 11 11 H 1.48502 * 109.47133 * 59.99638 * 8 6 4 12 12 N 1.46493 * 109.47559 * 239.99688 * 2 1 3 13 13 S 1.65604 * 119.99998 * 94.99983 * 12 2 1 14 14 O 1.42095 * 106.40350 * 178.54229 * 13 12 2 15 15 O 1.42101 * 106.40146 * 311.46174 * 13 12 2 16 16 C 1.76194 * 107.21990 * 64.99941 * 13 12 2 17 17 C 1.38192 * 119.61358 * 269.72784 * 16 13 12 18 18 C 1.38669 * 119.19412 * 179.76846 * 17 16 13 19 19 C 1.38607 * 118.43196 * 0.49861 * 18 17 16 20 20 C 1.38351 * 119.15625 * 359.74102 * 19 18 17 21 21 Cl 1.73596 * 119.63428 * 179.97438 * 20 19 18 22 22 N 1.31885 * 119.61068 * 89.99836 * 16 13 12 23 23 H 1.09000 * 109.47039 * 175.00988 * 1 2 3 24 24 H 1.08991 * 109.47102 * 295.01385 * 1 2 3 25 25 H 1.09002 * 109.46619 * 55.01373 * 1 2 3 26 26 H 0.97008 * 120.00261 * 355.08187 * 7 6 4 27 27 H 0.97002 * 119.99877 * 275.00314 * 12 2 1 28 28 H 1.08001 * 120.40013 * 0.02562 * 17 16 13 29 29 H 1.07995 * 120.78249 * 180.21873 * 18 17 16 30 30 H 1.08010 * 120.42158 * 179.77287 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.2835 -1.7597 1.1836 6 6 2.1712 -0.0206 2.4163 7 7 1.7475 1.2210 2.5083 8 14 2.9613 -0.8496 3.8921 9 1 2.9922 0.0984 5.0347 10 1 2.1724 -2.0509 4.2661 11 1 4.3478 -1.2553 3.5484 12 7 2.0184 -0.6906 -1.1960 13 16 2.4123 0.1771 -2.5504 14 8 2.8778 -0.7635 -3.5083 15 8 1.3248 1.0592 -2.7922 16 6 3.7928 1.1910 -2.1371 17 6 3.5813 2.4622 -1.6380 18 6 4.6740 3.2509 -1.3111 19 6 5.9444 2.7332 -1.5090 20 6 6.0792 1.4536 -2.0176 21 17 7.6644 0.7931 -2.2710 22 7 5.0158 0.7298 -2.3127 23 1 -0.3633 -1.0238 -0.0894 24 1 -0.3633 0.4345 0.9312 25 1 -0.3632 0.5893 -0.8420 26 1 1.4028 1.6753 1.7236 27 1 2.1111 -1.6562 -1.1947 28 1 2.5772 2.8352 -1.5004 29 1 4.5384 4.2467 -0.9158 30 1 6.8181 3.3210 -1.2688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198259416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:39 Heat of formation + Delta-G solvation = -52.423487 kcal Electronic energy + Delta-G solvation = -19140.282657 eV Core-core repulsion = 15895.392843 eV Total energy + Delta-G solvation = -3244.889814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23158 -36.92230 -36.73806 -35.79289 -35.49413 -32.81628 -32.34048 -31.37284 -28.50034 -24.94790 -24.38183 -23.74055 -21.30740 -19.51176 -18.12697 -17.66360 -17.04615 -16.75702 -16.18957 -15.30911 -15.06586 -14.62744 -14.05938 -13.80599 -13.58404 -13.32866 -12.63623 -12.30544 -11.99420 -11.91319 -11.75220 -11.64173 -11.44808 -11.39345 -11.36083 -10.92908 -10.82087 -10.49562 -10.23910 -10.21154 -9.76104 -9.30284 -9.07670 -8.77244 -8.30704 -6.61195 -4.33802 0.38748 0.78475 0.95710 1.66263 3.15421 3.32350 3.34228 3.50627 3.52943 4.07523 4.20432 4.35460 4.64154 4.70305 4.95099 5.02460 5.13979 5.21520 5.58284 5.78061 5.99723 6.15208 6.34001 6.63642 6.68033 7.13542 7.24073 7.31972 7.60712 7.96964 8.22206 8.59003 9.35243 10.76927 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.007372 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.520282 B = 3797.309326 C = 4858.169268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.254 3.746 3 H 0.039 0.961 4 C -0.599 4.599 5 H 0.061 0.939 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 1.068 2.932 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.287 1.287 12 N -1.087 6.087 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.953 6.953 16 C -0.415 4.415 17 C -0.077 4.077 18 C -0.074 4.074 19 C -0.108 4.108 20 C 0.154 3.846 21 Cl -0.026 7.026 22 N -0.384 5.384 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.270 0.730 27 H 0.414 0.586 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 4.193 -6.372 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.150 3.850 3 H 0.057 0.943 4 C -0.639 4.639 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.537 5.537 8 Si 0.895 3.105 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.850 5.850 13 S 2.775 3.225 14 O -0.945 6.945 15 O -0.943 6.943 16 C -0.632 4.632 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.129 4.129 20 C -0.015 4.015 21 Cl 0.002 6.998 22 N -0.095 5.095 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.249 0.751 28 H 0.179 0.821 29 H 0.174 0.826 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.980 3.726 -5.950 9.900 hybrid contribution 0.426 0.462 -0.713 0.951 sum 7.406 4.189 -6.663 10.807 Atomic orbital electron populations 1.22308 0.98280 1.00525 1.00404 1.18739 0.91017 0.92450 0.82787 0.94307 1.22088 1.48380 0.98261 0.95207 0.92124 1.25854 0.94866 0.96139 1.01236 1.70846 1.38102 1.12248 1.32467 0.83546 0.76262 0.75330 0.75348 1.20611 1.21117 1.21296 1.55673 1.79909 1.18691 1.30692 1.02415 0.73076 0.73569 0.73483 1.93549 1.81641 1.60385 1.58921 1.93603 1.48763 1.67708 1.84176 1.33985 1.11052 1.08635 1.09497 1.22173 1.02097 0.93075 0.92439 1.21736 0.91308 1.00848 0.96159 1.22090 0.99597 0.94325 0.96911 1.21862 0.88709 0.91260 0.99658 1.98401 1.19284 1.86937 1.95162 1.67097 0.96898 1.34548 1.10998 0.93544 0.92079 0.94524 0.91851 0.75101 0.82090 0.82633 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.38 37.16 0.35 -3.01 16 2 C 0.25 5.78 2.38 -69.08 -0.16 5.61 16 3 H 0.04 0.90 6.04 -51.93 -0.31 0.59 16 4 C -0.60 -15.18 8.55 -34.44 -0.29 -15.48 16 5 H 0.06 1.53 7.82 -52.48 -0.41 1.11 16 6 C 0.03 0.65 5.45 -17.82 -0.10 0.55 16 7 N -0.90 -24.47 13.63 55.43 0.76 -23.71 16 8 Si 1.07 23.45 29.91 -169.99 -5.08 18.37 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 12 N -1.09 -21.74 5.46 -5.88 -0.03 -21.77 16 13 S 2.69 51.58 5.71 -107.50 -0.61 50.97 16 14 O -0.96 -19.93 17.85 -57.17 -1.02 -20.95 16 15 O -0.95 -19.01 16.60 -57.17 -0.95 -19.95 16 16 C -0.41 -7.61 6.70 -17.55 -0.12 -7.73 16 17 C -0.08 -1.22 8.93 -39.44 -0.35 -1.57 16 18 C -0.07 -0.95 10.17 -39.29 -0.40 -1.35 16 19 C -0.11 -1.39 9.88 -39.40 -0.39 -1.78 16 20 C 0.15 2.43 7.27 -17.45 -0.13 2.30 16 21 Cl -0.03 -0.36 29.11 -51.86 -1.51 -1.87 16 22 N -0.38 -7.18 10.09 -9.57 -0.10 -7.27 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.38 7.83 -51.93 -0.41 0.97 16 25 H 0.04 0.74 7.73 -51.93 -0.40 0.33 16 26 H 0.27 7.17 6.38 -40.82 -0.26 6.91 16 27 H 0.41 7.65 8.83 -34.48 -0.30 7.35 16 28 H 0.16 2.34 7.60 -52.49 -0.40 1.94 16 29 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -31.41 294.90 -8.26 -39.67 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -2.56 Total: 4.52 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.59 Total: -22.45 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.63 Total: -52.75 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.97 Total: -40.90 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.08 Total: 18.37 kcal Atomic # 16 Polarization: 51.58 SS G_CDS: -0.61 Total: 50.97 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.41 -8.26 -39.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198259416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.756 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds