Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46923 * 2 1 4 4 C 1.50704 * 109.46857 * 119.99304 * 2 1 3 5 5 H 1.08003 * 119.99286 * 94.63268 * 4 2 1 6 6 C 1.37875 * 120.00446 * 274.62984 * 4 2 1 7 7 N 1.31513 * 119.99836 * 6.44952 * 6 4 2 8 8 Si 1.86797 * 120.00254 * 186.45125 * 6 4 2 9 9 H 1.48500 * 109.47319 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47070 * 300.00133 * 8 6 4 11 11 H 1.48502 * 109.47133 * 59.99638 * 8 6 4 12 12 N 1.46493 * 109.47559 * 239.99688 * 2 1 3 13 13 S 1.65604 * 119.99998 * 94.99983 * 12 2 1 14 14 O 1.42095 * 106.40350 * 178.54229 * 13 12 2 15 15 O 1.42101 * 106.40146 * 311.46174 * 13 12 2 16 16 C 1.76194 * 107.21990 * 64.99941 * 13 12 2 17 17 C 1.38192 * 119.61358 * 269.72784 * 16 13 12 18 18 C 1.38669 * 119.19412 * 179.76846 * 17 16 13 19 19 C 1.38607 * 118.43196 * 0.49861 * 18 17 16 20 20 C 1.38351 * 119.15625 * 359.74102 * 19 18 17 21 21 Cl 1.73596 * 119.63428 * 179.97438 * 20 19 18 22 22 N 1.31885 * 119.61068 * 89.99836 * 16 13 12 23 23 H 1.09000 * 109.47039 * 175.00988 * 1 2 3 24 24 H 1.08991 * 109.47102 * 295.01385 * 1 2 3 25 25 H 1.09002 * 109.46619 * 55.01373 * 1 2 3 26 26 H 0.97008 * 120.00261 * 355.08187 * 7 6 4 27 27 H 0.97002 * 119.99877 * 275.00314 * 12 2 1 28 28 H 1.08001 * 120.40013 * 0.02562 * 17 16 13 29 29 H 1.07995 * 120.78249 * 180.21873 * 18 17 16 30 30 H 1.08010 * 120.42158 * 179.77287 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.2835 -1.7597 1.1836 6 6 2.1712 -0.0206 2.4163 7 7 1.7475 1.2210 2.5083 8 14 2.9613 -0.8496 3.8921 9 1 2.9922 0.0984 5.0347 10 1 2.1724 -2.0509 4.2661 11 1 4.3478 -1.2553 3.5484 12 7 2.0184 -0.6906 -1.1960 13 16 2.4123 0.1771 -2.5504 14 8 2.8778 -0.7635 -3.5083 15 8 1.3248 1.0592 -2.7922 16 6 3.7928 1.1910 -2.1371 17 6 3.5813 2.4622 -1.6380 18 6 4.6740 3.2509 -1.3111 19 6 5.9444 2.7332 -1.5090 20 6 6.0792 1.4536 -2.0176 21 17 7.6644 0.7931 -2.2710 22 7 5.0158 0.7298 -2.3127 23 1 -0.3633 -1.0238 -0.0894 24 1 -0.3633 0.4345 0.9312 25 1 -0.3632 0.5893 -0.8420 26 1 1.4028 1.6753 1.7236 27 1 2.1111 -1.6562 -1.1947 28 1 2.5772 2.8352 -1.5004 29 1 4.5384 4.2467 -0.9158 30 1 6.8181 3.3210 -1.2688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198259416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = -75.921077 kcal Electronic energy + Delta-G solvation = -19141.301589 eV Core-core repulsion = 15895.392843 eV Total energy + Delta-G solvation = -3245.908746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.40764 -38.50870 -37.85051 -37.55587 -37.08583 -34.20451 -33.96608 -32.55495 -30.24757 -26.88744 -25.58582 -24.90696 -23.11111 -20.94963 -19.65182 -19.31785 -18.50099 -18.18873 -17.31062 -16.77250 -16.47446 -15.88078 -15.76376 -15.53586 -15.11349 -14.63204 -14.11288 -13.78582 -13.63110 -13.36345 -13.25350 -13.22383 -13.07609 -12.75369 -12.66045 -12.56608 -12.53774 -12.26324 -11.94167 -11.34432 -11.05728 -10.78976 -10.67531 -10.48300 -10.11363 -8.62891 -6.36058 -0.87692 -0.62659 -0.18172 0.53117 1.57055 1.61142 1.80271 1.82656 2.13251 2.55764 2.60155 2.95875 3.17729 3.50117 3.66839 3.80330 3.88040 4.01138 4.24073 4.54407 4.60761 4.70744 4.84988 4.93495 5.12075 5.35148 5.48020 5.83782 6.10076 6.16864 6.30202 6.59137 7.39090 8.76444 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.007372 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.520282 B = 3797.309326 C = 4858.169268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.255 3.745 3 H 0.034 0.966 4 C -0.611 4.611 5 H 0.056 0.944 6 C -0.017 4.017 7 N -0.924 5.924 8 Si 1.106 2.894 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.278 1.278 12 N -1.090 6.090 13 S 2.711 3.289 14 O -0.977 6.977 15 O -0.966 6.966 16 C -0.442 4.442 17 C -0.090 4.090 18 C -0.066 4.066 19 C -0.092 4.092 20 C 0.134 3.866 21 Cl -0.014 7.014 22 N -0.420 5.420 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.419 0.581 28 H 0.167 0.833 29 H 0.201 0.799 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 5.218 -5.872 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.150 3.850 3 H 0.052 0.948 4 C -0.650 4.650 5 H 0.075 0.925 6 C -0.218 4.218 7 N -0.560 5.560 8 Si 0.929 3.071 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.852 5.852 13 S 2.797 3.203 14 O -0.966 6.966 15 O -0.955 6.955 16 C -0.661 4.661 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.035 4.035 21 Cl 0.015 6.985 22 N -0.132 5.132 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.254 0.746 28 H 0.185 0.815 29 H 0.218 0.782 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.227 4.710 -5.471 10.945 hybrid contribution 0.125 0.199 -0.941 0.970 sum 8.352 4.909 -6.411 11.617 Atomic orbital electron populations 1.22227 0.97678 1.01069 1.00041 1.18587 0.91474 0.92119 0.82801 0.94842 1.22363 1.48072 0.98290 0.96317 0.92529 1.26955 0.94925 0.96219 1.03707 1.70924 1.39713 1.13025 1.32372 0.83033 0.76152 0.74974 0.72905 1.20860 1.19756 1.20359 1.55465 1.80470 1.19108 1.30142 1.01533 0.72988 0.73083 0.72672 1.93514 1.82095 1.61543 1.59493 1.93574 1.49950 1.67690 1.84311 1.33450 1.10618 1.09676 1.12354 1.22457 1.03705 0.92674 0.92278 1.22307 0.90237 1.02149 0.94520 1.22632 1.01224 0.93122 0.94210 1.22323 0.88630 0.92497 1.00075 1.98400 1.17982 1.87031 1.95134 1.66968 0.97614 1.36117 1.12534 0.92795 0.93515 0.93471 0.92505 0.74555 0.81502 0.78189 0.78634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.49 9.38 71.98 0.68 -5.81 16 2 C 0.26 11.61 2.38 44.25 0.11 11.72 16 3 H 0.03 1.57 6.04 -2.39 -0.01 1.55 16 4 C -0.61 -30.85 8.55 25.60 0.22 -30.63 16 5 H 0.06 2.84 7.82 -2.91 -0.02 2.81 16 6 C -0.02 -0.88 5.45 84.65 0.46 -0.41 16 7 N -0.92 -49.98 13.63 21.45 0.29 -49.68 16 8 Si 1.11 46.48 29.91 68.60 2.05 48.54 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 12 N -1.09 -43.84 5.46 -172.53 -0.94 -44.78 16 13 S 2.71 104.67 5.71 -56.49 -0.32 104.35 16 14 O -0.98 -41.31 17.85 -128.00 -2.28 -43.59 16 15 O -0.97 -38.59 16.60 -128.00 -2.12 -40.72 16 16 C -0.44 -16.07 6.70 84.67 0.57 -15.50 16 17 C -0.09 -2.72 8.93 22.36 0.20 -2.52 16 18 C -0.07 -1.48 10.17 22.46 0.23 -1.25 16 19 C -0.09 -2.03 9.88 22.38 0.22 -1.81 16 20 C 0.13 4.00 7.27 84.70 0.62 4.61 16 21 Cl -0.01 -0.36 29.11 -2.72 -0.08 -0.44 16 22 N -0.42 -15.47 10.09 -184.19 -1.86 -17.33 16 23 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 24 H 0.05 2.12 7.83 -2.39 -0.02 2.10 16 25 H 0.05 1.89 7.73 -2.39 -0.02 1.87 16 26 H 0.26 14.10 6.38 -92.70 -0.59 13.51 16 27 H 0.42 15.66 8.83 -96.74 -0.85 14.81 16 28 H 0.17 4.71 7.60 -2.91 -0.02 4.69 16 29 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -66.99 294.90 -1.46 -68.45 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.51 Total: 16.81 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.29 Total: -41.61 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -2.51 Total: -111.79 kcal Atomic # 8 Polarization: -79.90 SS G_CDS: -4.41 Total: -84.31 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.05 Total: 48.54 kcal Atomic # 16 Polarization: 104.67 SS G_CDS: -0.32 Total: 104.35 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.08 Total: -0.44 kcal Total: -66.99 -1.46 -68.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198259416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.471 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds