Wall clock time and date at job start Tue Mar 31 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48504 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47048 * 299.99912 * 3 2 1 6 6 H 1.48504 * 109.47216 * 60.00047 * 3 2 1 7 7 C 1.38885 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00750 * 179.97438 * 7 2 1 9 9 N 1.37056 * 119.99313 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99147 * 179.72609 * 9 7 2 11 11 S 1.71195 * 120.00574 * 359.97438 * 10 9 7 12 12 N 1.34781 * 119.99639 * 180.02562 * 10 9 7 13 13 C 1.39854 * 120.00259 * 175.76753 * 12 10 9 14 14 C 1.38869 * 120.06232 * 225.20338 * 13 12 10 15 15 C 1.38233 * 119.94215 * 179.78836 * 14 13 12 16 16 Cl 1.73603 * 119.97053 * 180.25100 * 15 14 13 17 17 C 1.38378 * 120.05762 * 0.48851 * 15 14 13 18 18 C 1.38382 * 120.12104 * 359.74305 * 17 15 14 19 19 Cl 1.73600 * 119.97434 * 180.02562 * 18 17 15 20 20 C 1.38230 * 120.05507 * 0.02562 * 18 17 15 21 21 H 0.96996 * 120.00468 * 359.97438 * 1 2 3 22 22 H 0.96989 * 120.00366 * 359.97438 * 9 7 2 23 23 H 0.97005 * 120.00105 * 355.76612 * 12 10 9 24 24 H 1.08008 * 120.02934 * 359.97438 * 14 13 12 25 25 H 1.08008 * 119.94052 * 179.72311 * 17 15 14 26 26 H 1.08010 * 120.02615 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.7088 1.3464 -0.0006 5 1 1.8900 2.3964 -1.2125 6 1 1.8900 2.3964 1.2125 7 6 2.0093 -1.2027 0.0005 8 1 3.0893 -1.2028 0.0001 9 7 1.3240 -2.3896 0.0005 10 6 1.9980 -3.5567 -0.0045 11 16 3.7099 -3.5567 -0.0116 12 7 1.3241 -4.7240 -0.0050 13 6 2.0202 -5.9333 -0.0997 14 6 1.5768 -6.9254 -0.9643 15 6 2.2693 -8.1180 -1.0591 16 17 1.7193 -9.3562 -2.1446 17 6 3.3976 -8.3277 -0.2859 18 6 3.8389 -7.3427 0.5801 19 17 5.2552 -7.6096 1.5478 20 6 3.1529 -6.1464 0.6752 21 1 -0.4851 0.8400 0.0004 22 1 0.3541 -2.3897 0.0005 23 1 0.3563 -4.7254 0.0602 24 1 0.6934 -6.7641 -1.5644 25 1 3.9346 -9.2620 -0.3582 26 1 3.4975 -5.3780 1.3516 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200999983.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:40 Heat of formation + Delta-G solvation = 22.179955 kcal Electronic energy + Delta-G solvation = -15545.609863 eV Core-core repulsion = 12608.831167 eV Total energy + Delta-G solvation = -2936.778696 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 289.974 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.67378 -37.76489 -36.54245 -36.17695 -34.77135 -32.38225 -30.40718 -29.27270 -25.75444 -23.39306 -22.45515 -21.74438 -19.16442 -18.06401 -17.16559 -15.90819 -15.55958 -15.35900 -14.80109 -14.26509 -14.07402 -13.93409 -13.64920 -13.14827 -12.14166 -12.12219 -11.98739 -11.75925 -11.41438 -11.05911 -11.01060 -10.94551 -10.70390 -10.59592 -10.11412 -10.04660 -9.15213 -8.50426 -8.17939 -7.24710 -6.82079 -5.99907 -4.50514 1.23198 1.36561 1.97890 2.34605 2.57217 2.94611 3.01988 3.03262 3.19898 3.62796 3.77413 3.87488 4.58905 4.79674 5.09007 5.23803 5.44694 5.50140 5.65180 6.19514 6.39004 6.40104 6.75431 6.83668 6.99739 7.29718 7.78840 8.08995 8.58896 8.73524 9.87714 Molecular weight = 289.97amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.004324 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.453493 B = 6473.987682 C = 7447.940963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.035 3.965 3 Si 0.952 3.048 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.280 4.280 8 H 0.150 0.850 9 N -0.448 5.448 10 C 0.417 3.583 11 S -0.732 6.732 12 N -0.661 5.661 13 C 0.197 3.803 14 C -0.133 4.133 15 C -0.022 4.022 16 Cl -0.073 7.073 17 C -0.118 4.118 18 C -0.022 4.022 19 Cl -0.067 7.067 20 C -0.056 4.056 21 H 0.288 0.712 22 H 0.395 0.605 23 H 0.396 0.604 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -11.250 0.248 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.175 4.175 3 Si 0.775 3.225 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.416 4.416 8 H 0.168 0.832 9 N -0.047 5.047 10 C 0.058 3.942 11 S -0.598 6.598 12 N -0.293 5.293 13 C 0.100 3.900 14 C -0.156 4.156 15 C -0.051 4.051 16 Cl -0.045 7.045 17 C -0.138 4.138 18 C -0.052 4.052 19 Cl -0.038 7.038 20 C -0.082 4.082 21 H 0.099 0.901 22 H 0.231 0.769 23 H 0.233 0.767 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.431 -10.879 0.217 10.890 hybrid contribution -1.656 0.694 -0.166 1.803 sum -2.087 -10.185 0.052 10.397 Atomic orbital electron populations 1.69660 1.06789 1.30674 1.42072 1.25874 0.95849 1.01656 0.94167 0.85412 0.80528 0.78125 0.78418 1.17591 1.19806 1.19788 1.21032 0.96080 0.79798 1.44644 0.83249 1.41106 1.09216 1.04012 1.50407 1.20897 0.94219 0.80314 0.98789 1.92475 0.92587 1.92626 1.82125 1.41339 1.08125 1.02087 1.77708 1.16802 0.94107 0.84596 0.94539 1.20780 1.02585 0.93139 0.99089 1.20100 0.97066 0.90906 0.97019 1.98347 1.89419 1.53412 1.63300 1.20683 0.96475 0.99785 0.96863 1.20326 0.91993 0.95143 0.97717 1.98350 1.38901 1.96424 1.70099 1.21755 0.93335 0.94172 0.98915 0.90124 0.76892 0.76694 0.84881 0.84623 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -19.61 13.05 55.49 0.72 -18.89 15 2 C 0.04 0.80 5.50 -17.46 -0.10 0.71 15 3 Si 0.95 18.17 29.55 -169.99 -5.02 13.15 15 4 H -0.25 -4.94 7.11 56.52 0.40 -4.54 15 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 6 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15 7 C -0.28 -6.74 9.51 -14.98 -0.14 -6.88 15 8 H 0.15 3.88 6.22 -52.49 -0.33 3.56 15 9 N -0.45 -9.90 5.29 -12.53 -0.07 -9.97 15 10 C 0.42 9.07 7.81 -86.92 -0.68 8.39 15 11 S -0.73 -18.38 24.23 -107.50 -2.60 -20.98 15 12 N -0.66 -11.47 5.32 -11.41 -0.06 -11.53 15 13 C 0.20 3.33 5.93 -83.73 -0.50 2.84 15 14 C -0.13 -1.94 9.75 -39.35 -0.38 -2.32 15 15 C -0.02 -0.31 6.32 -39.53 -0.25 -0.56 15 16 Cl -0.07 -0.89 28.95 -51.86 -1.50 -2.39 15 17 C -0.12 -1.64 9.61 -39.48 -0.38 -2.02 15 18 C -0.02 -0.35 6.32 -39.53 -0.25 -0.59 15 19 Cl -0.07 -0.98 28.95 -51.86 -1.50 -2.48 15 20 C -0.06 -1.00 7.65 -39.35 -0.30 -1.30 15 21 H 0.29 6.12 8.31 -40.82 -0.34 5.79 15 22 H 0.39 8.10 7.91 -40.82 -0.32 7.78 15 23 H 0.40 5.55 8.84 -40.82 -0.36 5.19 15 24 H 0.13 1.70 8.06 -52.48 -0.42 1.27 15 25 H 0.14 1.62 8.06 -52.48 -0.42 1.20 15 26 H 0.17 3.41 6.11 -44.67 -0.27 3.14 15 LS Contribution 278.56 15.07 4.20 4.20 Total: -1.00 -26.62 278.56 -10.08 -36.69 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -1.26 Total: 13.95 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.98 Total: -1.75 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.60 Total: -40.39 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.15 kcal Atomic # 16 Polarization: -18.38 SS G_CDS: -2.60 Total: -20.98 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -3.00 Total: -4.87 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.62 -10.08 -36.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200999983.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.873 kcal (2) G-P(sol) polarization free energy of solvation -26.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds