Wall clock time and date at job start Tue Mar 31 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48504 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47048 * 299.99912 * 3 2 1 6 6 H 1.48504 * 109.47216 * 60.00047 * 3 2 1 7 7 C 1.38885 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00750 * 179.97438 * 7 2 1 9 9 N 1.37056 * 119.99313 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99147 * 179.72609 * 9 7 2 11 11 S 1.71195 * 120.00574 * 359.97438 * 10 9 7 12 12 N 1.34781 * 119.99639 * 180.02562 * 10 9 7 13 13 C 1.39854 * 120.00259 * 175.76753 * 12 10 9 14 14 C 1.38869 * 120.06232 * 225.20338 * 13 12 10 15 15 C 1.38233 * 119.94215 * 179.78836 * 14 13 12 16 16 Cl 1.73603 * 119.97053 * 180.25100 * 15 14 13 17 17 C 1.38378 * 120.05762 * 0.48851 * 15 14 13 18 18 C 1.38382 * 120.12104 * 359.74305 * 17 15 14 19 19 Cl 1.73600 * 119.97434 * 180.02562 * 18 17 15 20 20 C 1.38230 * 120.05507 * 0.02562 * 18 17 15 21 21 H 0.96996 * 120.00468 * 359.97438 * 1 2 3 22 22 H 0.96989 * 120.00366 * 359.97438 * 9 7 2 23 23 H 0.97005 * 120.00105 * 355.76612 * 12 10 9 24 24 H 1.08008 * 120.02934 * 359.97438 * 14 13 12 25 25 H 1.08008 * 119.94052 * 179.72311 * 17 15 14 26 26 H 1.08010 * 120.02615 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.7088 1.3464 -0.0006 5 1 1.8900 2.3964 -1.2125 6 1 1.8900 2.3964 1.2125 7 6 2.0093 -1.2027 0.0005 8 1 3.0893 -1.2028 0.0001 9 7 1.3240 -2.3896 0.0005 10 6 1.9980 -3.5567 -0.0045 11 16 3.7099 -3.5567 -0.0116 12 7 1.3241 -4.7240 -0.0050 13 6 2.0202 -5.9333 -0.0997 14 6 1.5768 -6.9254 -0.9643 15 6 2.2693 -8.1180 -1.0591 16 17 1.7193 -9.3562 -2.1446 17 6 3.3976 -8.3277 -0.2859 18 6 3.8389 -7.3427 0.5801 19 17 5.2552 -7.6096 1.5478 20 6 3.1529 -6.1464 0.6752 21 1 -0.4851 0.8400 0.0004 22 1 0.3541 -2.3897 0.0005 23 1 0.3563 -4.7254 0.0602 24 1 0.6934 -6.7641 -1.5644 25 1 3.9346 -9.2620 -0.3582 26 1 3.4975 -5.3780 1.3516 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200999983.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:40 Heat of formation + Delta-G solvation = 8.634758 kcal Electronic energy + Delta-G solvation = -15546.197227 eV Core-core repulsion = 12608.831167 eV Total energy + Delta-G solvation = -2937.366059 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 289.974 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02453 -39.30887 -37.66185 -37.47468 -36.21496 -34.05253 -31.64376 -30.62877 -27.44619 -24.95315 -23.74452 -23.19626 -20.81247 -19.59801 -18.61250 -17.23400 -17.09715 -16.75124 -16.34094 -15.82167 -15.42319 -15.36908 -14.96060 -14.63423 -13.77572 -13.25682 -13.19343 -13.16925 -12.88542 -12.79344 -12.26926 -12.13176 -12.08203 -11.93986 -11.84893 -11.52174 -10.69932 -9.74076 -9.57026 -8.96194 -8.70342 -7.89202 -6.32447 -0.04777 0.12078 0.71721 0.82546 1.35765 1.38428 1.47078 1.49963 1.57365 2.03075 2.29245 2.54166 2.83006 3.15573 3.96834 4.07170 4.16526 4.26569 4.36806 5.00838 5.07164 5.13863 5.17735 5.33908 5.38034 5.81646 6.30073 6.36892 6.82134 7.02409 8.17192 Molecular weight = 289.97amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.004324 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.453493 B = 6473.987682 C = 7447.940963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.012 3.988 3 Si 1.008 2.992 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.313 4.313 8 H 0.125 0.875 9 N -0.448 5.448 10 C 0.439 3.561 11 S -0.796 6.796 12 N -0.644 5.644 13 C 0.174 3.826 14 C -0.120 4.120 15 C -0.021 4.021 16 Cl -0.049 7.049 17 C -0.106 4.106 18 C -0.027 4.027 19 Cl -0.061 7.061 20 C -0.074 4.074 21 H 0.296 0.704 22 H 0.403 0.597 23 H 0.416 0.584 24 H 0.156 0.844 25 H 0.160 0.840 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -12.405 -0.507 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.197 4.197 3 Si 0.828 3.172 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.447 4.447 8 H 0.143 0.857 9 N -0.049 5.049 10 C 0.076 3.924 11 S -0.665 6.665 12 N -0.277 5.277 13 C 0.077 3.923 14 C -0.142 4.142 15 C -0.049 4.049 16 Cl -0.020 7.020 17 C -0.126 4.126 18 C -0.057 4.057 19 Cl -0.032 7.032 20 C -0.099 4.099 21 H 0.107 0.893 22 H 0.240 0.760 23 H 0.255 0.745 24 H 0.173 0.827 25 H 0.178 0.822 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.514 -12.102 -0.535 12.208 hybrid contribution -1.361 0.812 0.051 1.585 sum -2.875 -11.290 -0.484 11.660 Atomic orbital electron populations 1.69665 1.07331 1.31759 1.42046 1.26501 0.96546 1.03468 0.93215 0.84630 0.78514 0.75020 0.79003 1.19078 1.18784 1.18707 1.20841 0.95373 0.81082 1.47444 0.85714 1.40993 1.09443 1.03664 1.50769 1.20591 0.93030 0.81487 0.97265 1.92586 0.96198 1.93710 1.84013 1.41152 1.08970 1.01042 1.76507 1.16973 0.94574 0.84850 0.95872 1.20947 1.02848 0.92402 0.98039 1.20211 0.96659 0.91206 0.96865 1.98365 1.89112 1.52176 1.62338 1.20948 0.96236 0.99998 0.95464 1.20404 0.92054 0.95010 0.98215 1.98350 1.38528 1.96314 1.70026 1.21523 0.94462 0.94601 0.99273 0.89326 0.75955 0.74461 0.82651 0.82198 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -39.33 13.05 21.66 0.28 -39.04 15 2 C 0.01 0.53 5.50 84.90 0.47 0.99 15 3 Si 1.01 37.04 29.55 68.60 2.03 39.07 15 4 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 5 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 7 C -0.31 -15.32 9.51 84.03 0.80 -14.52 15 8 H 0.13 6.74 6.22 -2.91 -0.02 6.72 15 9 N -0.45 -19.96 5.29 -193.57 -1.02 -20.99 15 10 C 0.44 19.23 7.81 179.05 1.40 20.63 15 11 S -0.80 -41.15 24.23 -56.49 -1.37 -42.52 15 12 N -0.64 -21.88 5.32 -190.03 -1.01 -22.89 15 13 C 0.17 5.71 5.93 38.17 0.23 5.94 15 14 C -0.12 -3.21 9.75 22.42 0.22 -2.99 15 15 C -0.02 -0.52 6.32 22.30 0.14 -0.38 15 16 Cl -0.05 -1.01 28.95 -2.72 -0.08 -1.09 15 17 C -0.11 -2.72 9.61 22.34 0.21 -2.50 15 18 C -0.03 -0.84 6.32 22.30 0.14 -0.70 15 19 Cl -0.06 -1.76 28.95 -2.72 -0.08 -1.84 15 20 C -0.07 -2.63 7.65 22.42 0.17 -2.46 15 21 H 0.30 12.23 8.31 -92.71 -0.77 11.46 15 22 H 0.40 16.44 7.91 -92.72 -0.73 15.70 15 23 H 0.42 11.00 8.84 -92.70 -0.82 10.18 15 24 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 25 H 0.16 3.29 8.06 -2.91 -0.02 3.27 15 26 H 0.14 5.81 6.11 -7.87 -0.05 5.76 15 Total: -1.00 -57.60 278.56 2.21 -55.39 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.32 Total: 29.92 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 3.78 Total: 4.01 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.75 Total: -82.92 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: -41.15 SS G_CDS: -1.37 Total: -42.52 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -0.16 Total: -2.93 kcal Total: -57.60 2.21 -55.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200999983.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.021 kcal (2) G-P(sol) polarization free energy of solvation -57.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds