Wall clock time and date at job start Tue Mar 31 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48494 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47176 * 300.00403 * 3 2 1 6 6 H 1.48503 * 109.47213 * 59.99942 * 3 2 1 7 7 C 1.38876 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99545 * 179.97438 * 7 2 1 9 9 N 1.37047 * 120.00380 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00066 * 180.02562 * 9 7 2 11 11 S 1.71193 * 120.00363 * 359.97438 * 10 9 7 12 12 N 1.34783 * 119.99889 * 179.97438 * 10 9 7 13 13 C 1.39909 * 119.99908 * 185.46611 * 12 10 9 14 14 C 1.38885 * 120.07307 * 44.37011 * 13 12 10 15 15 C 1.38112 * 119.96692 * 179.74523 * 14 13 12 16 16 C 1.38276 * 120.10415 * 0.55077 * 15 14 13 17 17 C 1.38375 * 120.14389 * 359.70070 * 16 15 14 18 18 Cl 1.73599 * 119.98978 * 180.02562 * 17 16 15 19 19 C 1.38339 * 120.03042 * 0.02562 * 17 16 15 20 20 Cl 1.73601 * 120.05256 * 180.02562 * 19 17 16 21 21 H 0.97007 * 119.99834 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99482 * 359.97438 * 9 7 2 23 23 H 0.97006 * 119.99772 * 5.19352 * 12 10 9 24 24 H 1.08000 * 120.01382 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.94579 * 180.27267 * 15 14 13 26 26 H 1.08005 * 119.93067 * 179.72285 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7087 1.3464 -0.0006 5 1 1.8900 2.3965 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0091 -1.2027 -0.0005 8 1 3.0892 -1.2027 -0.0010 9 7 1.3240 -2.3896 -0.0016 10 6 1.9978 -3.5567 -0.0016 11 16 3.7098 -3.5568 -0.0009 12 7 1.3239 -4.7240 -0.0021 13 6 2.0187 -5.9329 0.1133 14 6 3.0370 -6.0638 1.0486 15 6 3.7178 -7.2599 1.1643 16 6 3.3950 -8.3240 0.3425 17 6 2.3848 -8.1968 -0.5946 18 17 1.9824 -9.5355 -1.6239 19 6 1.6952 -7.0032 -0.7115 20 17 0.4273 -6.8432 -1.8864 21 1 -0.4850 0.8401 0.0004 22 1 0.3540 -2.3896 -0.0016 23 1 0.3569 -4.7256 -0.0785 24 1 3.2932 -5.2322 1.6883 25 1 4.5066 -7.3627 1.8948 26 1 3.9323 -9.2566 0.4323 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201023057.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:43 Heat of formation + Delta-G solvation = 22.195115 kcal Electronic energy + Delta-G solvation = -15744.227725 eV Core-core repulsion = 12807.449687 eV Total energy + Delta-G solvation = -2936.778038 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 289.974 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.67062 -37.70782 -36.39925 -36.29103 -34.90503 -32.37483 -30.36175 -29.19507 -25.72509 -23.39877 -22.44037 -21.69303 -19.14357 -18.05024 -17.16796 -16.06204 -15.63390 -15.29403 -14.72932 -14.19725 -13.99665 -13.86629 -13.74007 -13.13436 -12.11878 -11.97002 -11.80651 -11.64463 -11.42068 -11.17357 -11.02269 -10.93651 -10.68376 -10.58738 -10.22141 -10.03008 -9.16201 -8.50192 -8.12576 -7.22707 -6.74839 -6.03951 -4.48063 1.24046 1.34325 2.00421 2.37312 2.45245 2.95647 3.03466 3.04432 3.22386 3.65987 3.81141 3.90014 4.61217 4.81628 5.04363 5.19500 5.51864 5.53276 5.69029 6.14593 6.43035 6.57175 6.79225 6.86038 7.01419 7.29961 7.80207 8.11184 8.61369 8.75968 9.89722 Molecular weight = 289.97amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.004463 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.454355 B = 6272.497936 C = 6901.975160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.035 3.965 3 Si 0.952 3.048 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.279 4.279 8 H 0.151 0.849 9 N -0.448 5.448 10 C 0.421 3.579 11 S -0.738 6.738 12 N -0.659 5.659 13 C 0.204 3.796 14 C -0.058 4.058 15 C -0.101 4.101 16 C -0.116 4.116 17 C -0.028 4.028 18 Cl -0.066 7.066 19 C -0.059 4.059 20 Cl -0.059 7.059 21 H 0.288 0.712 22 H 0.395 0.605 23 H 0.395 0.605 24 H 0.156 0.844 25 H 0.136 0.864 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -11.355 1.337 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.414 4.414 8 H 0.168 0.832 9 N -0.047 5.047 10 C 0.062 3.938 11 S -0.607 6.607 12 N -0.290 5.290 13 C 0.106 3.894 14 C -0.082 4.082 15 C -0.122 4.122 16 C -0.136 4.136 17 C -0.056 4.056 18 Cl -0.037 7.037 19 C -0.091 4.091 20 Cl -0.030 7.030 21 H 0.099 0.901 22 H 0.231 0.769 23 H 0.232 0.768 24 H 0.174 0.826 25 H 0.154 0.846 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.518 -10.980 1.117 11.049 hybrid contribution -1.880 0.713 -0.449 2.061 sum -2.398 -10.267 0.667 10.564 Atomic orbital electron populations 1.69671 1.06797 1.30650 1.41989 1.25883 0.95850 1.01662 0.94211 0.85408 0.80500 0.78130 0.78400 1.17601 1.19823 1.19804 1.21033 0.96092 0.79790 1.44529 0.83222 1.41130 1.09249 1.04054 1.50260 1.20848 0.94071 0.80152 0.98742 1.92429 0.92623 1.93425 1.82222 1.41408 1.08270 1.02117 1.77223 1.16810 0.95477 0.83436 0.93724 1.21555 0.93240 0.97265 0.96135 1.20954 1.00064 0.91704 0.99452 1.20870 0.96846 1.00287 0.95638 1.20292 0.99498 0.88256 0.97593 1.98349 1.93395 1.45027 1.66918 1.20567 0.97504 0.95388 0.95656 1.98350 1.49821 1.97933 1.56907 0.90132 0.76906 0.76774 0.82628 0.84625 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -19.87 13.05 55.49 0.72 -19.14 15 2 C 0.03 0.80 5.50 -17.47 -0.10 0.70 15 3 Si 0.95 18.29 29.55 -169.99 -5.02 13.27 15 4 H -0.25 -4.96 7.11 56.52 0.40 -4.56 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 7 C -0.28 -6.79 9.50 -14.98 -0.14 -6.93 15 8 H 0.15 3.91 6.22 -52.48 -0.33 3.59 15 9 N -0.45 -10.14 5.29 -12.54 -0.07 -10.20 15 10 C 0.42 9.38 7.70 -86.92 -0.67 8.71 15 11 S -0.74 -18.64 24.66 -107.50 -2.65 -21.29 15 12 N -0.66 -12.16 4.88 -11.38 -0.06 -12.21 15 13 C 0.20 3.59 5.83 -83.67 -0.49 3.11 15 14 C -0.06 -0.99 7.88 -39.39 -0.31 -1.30 15 15 C -0.10 -1.39 10.04 -39.61 -0.40 -1.78 15 16 C -0.12 -1.52 9.82 -39.52 -0.39 -1.91 15 17 C -0.03 -0.40 6.32 -39.49 -0.25 -0.65 15 18 Cl -0.07 -0.86 27.96 -51.86 -1.45 -2.31 15 19 C -0.06 -0.97 6.34 -39.28 -0.25 -1.21 15 20 Cl -0.06 -0.90 27.17 -51.86 -1.41 -2.31 15 21 H 0.29 6.20 8.31 -40.82 -0.34 5.86 15 22 H 0.39 8.41 7.92 -40.82 -0.32 8.08 15 23 H 0.40 6.38 8.45 -40.82 -0.34 6.03 15 24 H 0.16 2.93 6.53 -52.49 -0.34 2.59 15 25 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 26 H 0.13 1.38 8.06 -52.48 -0.42 0.96 15 LS Contribution 276.36 15.07 4.16 4.16 Total: -1.00 -27.13 276.36 -10.07 -37.20 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -1.32 Total: 14.12 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.99 Total: -1.27 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.60 Total: -41.56 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 16 Polarization: -18.64 SS G_CDS: -2.65 Total: -21.29 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.86 Total: -4.63 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.13 -10.07 -37.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201023057.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.397 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds