Wall clock time and date at job start Tue Mar 31 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48494 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47176 * 300.00403 * 3 2 1 6 6 H 1.48503 * 109.47213 * 59.99942 * 3 2 1 7 7 C 1.38876 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99545 * 179.97438 * 7 2 1 9 9 N 1.37047 * 120.00380 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00066 * 180.02562 * 9 7 2 11 11 S 1.71193 * 120.00363 * 359.97438 * 10 9 7 12 12 N 1.34783 * 119.99889 * 179.97438 * 10 9 7 13 13 C 1.39909 * 119.99908 * 185.46611 * 12 10 9 14 14 C 1.38885 * 120.07307 * 44.37011 * 13 12 10 15 15 C 1.38112 * 119.96692 * 179.74523 * 14 13 12 16 16 C 1.38276 * 120.10415 * 0.55077 * 15 14 13 17 17 C 1.38375 * 120.14389 * 359.70070 * 16 15 14 18 18 Cl 1.73599 * 119.98978 * 180.02562 * 17 16 15 19 19 C 1.38339 * 120.03042 * 0.02562 * 17 16 15 20 20 Cl 1.73601 * 120.05256 * 180.02562 * 19 17 16 21 21 H 0.97007 * 119.99834 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99482 * 359.97438 * 9 7 2 23 23 H 0.97006 * 119.99772 * 5.19352 * 12 10 9 24 24 H 1.08000 * 120.01382 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.94579 * 180.27267 * 15 14 13 26 26 H 1.08005 * 119.93067 * 179.72285 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7087 1.3464 -0.0006 5 1 1.8900 2.3965 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0091 -1.2027 -0.0005 8 1 3.0892 -1.2027 -0.0010 9 7 1.3240 -2.3896 -0.0016 10 6 1.9978 -3.5567 -0.0016 11 16 3.7098 -3.5568 -0.0009 12 7 1.3239 -4.7240 -0.0021 13 6 2.0187 -5.9329 0.1133 14 6 3.0370 -6.0638 1.0486 15 6 3.7178 -7.2599 1.1643 16 6 3.3950 -8.3240 0.3425 17 6 2.3848 -8.1968 -0.5946 18 17 1.9824 -9.5355 -1.6239 19 6 1.6952 -7.0032 -0.7115 20 17 0.4273 -6.8432 -1.8864 21 1 -0.4850 0.8401 0.0004 22 1 0.3540 -2.3896 -0.0016 23 1 0.3569 -4.7256 -0.0785 24 1 3.2932 -5.2322 1.6883 25 1 4.5066 -7.3627 1.8948 26 1 3.9323 -9.2566 0.4323 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201023057.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:43 Heat of formation + Delta-G solvation = 8.300794 kcal Electronic energy + Delta-G solvation = -15744.830228 eV Core-core repulsion = 12807.449687 eV Total energy + Delta-G solvation = -2937.380541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 289.974 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.02568 -39.27873 -37.59692 -37.53232 -36.40524 -34.07296 -31.57523 -30.55166 -27.43601 -24.97134 -23.70396 -23.16247 -20.81166 -19.61762 -18.60744 -17.36796 -17.16050 -16.76719 -16.27170 -15.78814 -15.43472 -15.14466 -15.03620 -14.68740 -13.78109 -13.23722 -13.06632 -12.89070 -12.85014 -12.78767 -12.42356 -12.13397 -12.08210 -11.95546 -11.84631 -11.68063 -10.75130 -9.72606 -9.54016 -8.96278 -8.64103 -7.95695 -6.32761 -0.03813 0.10989 0.74827 0.81473 1.21659 1.36942 1.46609 1.50517 1.57864 2.03227 2.28816 2.61693 2.83302 3.11964 3.93285 3.97654 4.29813 4.36758 4.46622 5.01079 5.11468 5.14534 5.32173 5.38136 5.52642 5.85087 6.23549 6.35153 6.81116 7.00216 8.17261 Molecular weight = 289.97amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.004463 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.454355 B = 6272.497936 C = 6901.975160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.010 3.990 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.311 4.311 8 H 0.128 0.872 9 N -0.450 5.450 10 C 0.441 3.559 11 S -0.793 6.793 12 N -0.647 5.647 13 C 0.174 3.826 14 C -0.075 4.075 15 C -0.090 4.090 16 C -0.100 4.100 17 C -0.034 4.034 18 Cl -0.049 7.049 19 C -0.065 4.065 20 Cl -0.056 7.056 21 H 0.296 0.704 22 H 0.401 0.599 23 H 0.407 0.593 24 H 0.132 0.868 25 H 0.167 0.833 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -12.628 1.380 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.199 4.199 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.446 4.446 8 H 0.145 0.855 9 N -0.050 5.050 10 C 0.079 3.921 11 S -0.664 6.664 12 N -0.279 5.279 13 C 0.077 3.923 14 C -0.098 4.098 15 C -0.110 4.110 16 C -0.119 4.119 17 C -0.063 4.063 18 Cl -0.020 7.020 19 C -0.097 4.097 20 Cl -0.027 7.027 21 H 0.107 0.893 22 H 0.238 0.762 23 H 0.246 0.754 24 H 0.150 0.850 25 H 0.185 0.815 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.524 -12.320 1.164 12.386 hybrid contribution -1.910 0.863 -0.467 2.147 sum -2.434 -11.457 0.698 11.733 Atomic orbital electron populations 1.69685 1.07463 1.31768 1.42027 1.26563 0.96554 1.03615 0.93178 0.84595 0.78562 0.74804 0.78972 1.18840 1.18916 1.18625 1.20876 0.95440 0.80968 1.47320 0.85474 1.41051 1.09393 1.03838 1.50739 1.20601 0.93072 0.81154 0.97258 1.92459 0.95667 1.94302 1.83977 1.41260 1.08770 1.01496 1.76336 1.17023 0.96673 0.83353 0.95237 1.21480 0.93982 0.98109 0.96237 1.21301 0.99645 0.90458 0.99623 1.21298 0.95610 1.01251 0.93766 1.20535 0.99486 0.88231 0.98027 1.98359 1.93324 1.43891 1.66474 1.20656 0.97807 0.95587 0.95600 1.98349 1.49676 1.97971 1.56696 0.89336 0.76229 0.75424 0.85037 0.81539 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -40.30 13.05 21.65 0.28 -40.02 15 2 C 0.01 0.44 5.50 84.90 0.47 0.91 15 3 Si 1.01 37.32 29.55 68.60 2.03 39.35 15 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 7 C -0.31 -15.49 9.50 84.03 0.80 -14.69 15 8 H 0.13 6.89 6.22 -2.91 -0.02 6.87 15 9 N -0.45 -20.78 5.29 -193.58 -1.02 -21.80 15 10 C 0.44 20.00 7.70 179.06 1.38 21.38 15 11 S -0.79 -41.00 24.66 -56.49 -1.39 -42.39 15 12 N -0.65 -23.98 4.88 -189.93 -0.93 -24.91 15 13 C 0.17 6.06 5.83 38.18 0.22 6.28 15 14 C -0.07 -2.50 7.88 22.39 0.18 -2.33 15 15 C -0.09 -2.26 10.04 22.25 0.22 -2.04 15 16 C -0.10 -2.26 9.82 22.31 0.22 -2.05 15 17 C -0.03 -0.91 6.32 22.33 0.14 -0.77 15 18 Cl -0.05 -1.17 27.96 -2.72 -0.08 -1.24 15 19 C -0.07 -2.04 6.34 22.46 0.14 -1.89 15 20 Cl -0.06 -1.65 27.17 -2.72 -0.07 -1.72 15 21 H 0.30 12.49 8.31 -92.70 -0.77 11.72 15 22 H 0.40 17.31 7.92 -92.71 -0.73 16.57 15 23 H 0.41 13.11 8.45 -92.70 -0.78 12.32 15 24 H 0.13 5.06 6.53 -2.91 -0.02 5.05 15 25 H 0.17 3.10 8.06 -2.91 -0.02 3.08 15 26 H 0.17 2.66 8.06 -2.91 -0.02 2.64 15 Total: -1.00 -58.59 276.36 2.34 -56.25 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.25 Total: 31.69 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 3.77 Total: 4.80 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.67 Total: -86.73 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 16 Polarization: -41.00 SS G_CDS: -1.39 Total: -42.39 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.15 Total: -2.97 kcal Total: -58.59 2.34 -56.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201023057.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.553 kcal (2) G-P(sol) polarization free energy of solvation -58.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds