Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31481 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48494 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47355 * 299.99991 * 3 2 1 6 6 H 1.48500 * 109.47242 * 59.99751 * 3 2 1 7 7 C 1.38883 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00060 * 180.02562 * 7 2 1 9 9 N 1.37047 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99803 * 179.97438 * 9 7 2 11 11 S 1.71194 * 120.00002 * 359.97438 * 10 9 7 12 12 N 1.34770 * 119.99672 * 179.97438 * 10 9 7 13 13 C 1.39908 * 119.99604 * 185.53889 * 12 10 9 14 14 C 1.38912 * 120.05154 * 221.87784 * 13 12 10 15 15 C 1.38100 * 119.96631 * 180.02562 * 14 13 12 16 16 C 1.38377 * 120.06899 * 359.97438 * 15 14 13 17 17 Cl 1.73596 * 119.94445 * 180.27608 * 16 15 14 18 18 C 1.38480 * 120.11098 * 0.02562 * 16 15 14 19 19 Cl 1.73596 * 119.98631 * 180.02562 * 18 16 15 20 20 C 1.38242 * 120.03187 * 0.02562 * 18 16 15 21 21 H 0.97004 * 119.99640 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00191 * 359.97438 * 9 7 2 23 23 H 0.97004 * 120.00448 * 5.53711 * 12 10 9 24 24 H 1.07999 * 120.01655 * 0.03993 * 14 13 12 25 25 H 1.07997 * 119.96353 * 180.02562 * 15 14 13 26 26 H 1.07997 * 120.03333 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7088 1.3465 -0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8900 2.3965 1.2125 7 6 2.0093 -1.2027 0.0005 8 1 3.0892 -1.2027 0.0010 9 7 1.3240 -2.3896 0.0005 10 6 1.9979 -3.5568 0.0005 11 16 3.7098 -3.5568 -0.0001 12 7 1.3240 -4.7239 0.0011 13 6 2.0187 -5.9327 0.1180 14 6 1.6574 -7.0213 -0.6656 15 6 2.3440 -8.2138 -0.5483 16 6 3.3919 -8.3252 0.3486 17 17 4.2573 -9.8235 0.4882 18 6 3.7546 -7.2419 1.1312 19 17 5.0701 -7.3850 2.2548 20 6 3.0696 -6.0464 1.0181 21 1 -0.4850 0.8401 -0.0004 22 1 0.3540 -2.3896 0.0005 23 1 0.3573 -4.7259 -0.0796 24 1 0.8401 -6.9351 -1.3663 25 1 2.0633 -9.0600 -1.1578 26 1 3.3522 -5.2017 1.6288 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201166864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 7.737361 kcal Electronic energy + Delta-G solvation = -15583.722630 eV Core-core repulsion = 12646.317657 eV Total energy + Delta-G solvation = -2937.404973 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 289.974 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.99761 -39.30274 -37.65110 -37.40821 -36.21265 -34.02450 -31.87458 -30.36311 -27.40487 -25.01483 -23.65933 -23.20789 -20.80109 -19.56641 -18.57672 -17.48600 -17.13710 -16.71531 -16.26465 -15.75180 -15.45269 -15.15431 -14.85106 -14.56130 -13.79982 -13.42326 -13.24418 -12.89030 -12.80371 -12.78267 -12.46832 -12.12495 -11.97930 -11.92571 -11.79208 -11.55623 -10.68402 -9.90708 -9.39407 -8.97042 -8.64105 -7.93265 -6.32613 -0.11992 0.24564 0.75136 0.94911 1.26345 1.38508 1.47420 1.50121 1.57687 2.03710 2.30123 2.58773 2.82897 3.15977 3.79416 4.13719 4.21736 4.32897 4.71095 4.91064 5.08277 5.12601 5.17841 5.37918 5.44778 5.84586 6.31551 6.37717 6.82005 7.02617 8.16213 Molecular weight = 289.97amu Principal moments of inertia in cm(-1) A = 0.034465 B = 0.004026 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.227666 B = 6953.967465 C = 7521.490621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.012 3.988 3 Si 1.007 2.993 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.312 4.312 8 H 0.125 0.875 9 N -0.448 5.448 10 C 0.438 3.562 11 S -0.802 6.802 12 N -0.643 5.643 13 C 0.171 3.829 14 C -0.116 4.116 15 C -0.082 4.082 16 C -0.051 4.051 17 Cl -0.054 7.054 18 C -0.034 4.034 19 Cl -0.062 7.062 20 C -0.076 4.076 21 H 0.297 0.703 22 H 0.403 0.597 23 H 0.417 0.583 24 H 0.169 0.831 25 H 0.177 0.823 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 -12.522 -0.134 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.197 4.197 3 Si 0.828 3.172 4 H -0.192 1.192 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.446 4.446 8 H 0.142 0.858 9 N -0.048 5.048 10 C 0.075 3.925 11 S -0.673 6.673 12 N -0.275 5.275 13 C 0.074 3.926 14 C -0.137 4.137 15 C -0.101 4.101 16 C -0.079 4.079 17 Cl -0.025 7.025 18 C -0.064 4.064 19 Cl -0.033 7.033 20 C -0.101 4.101 21 H 0.107 0.893 22 H 0.241 0.759 23 H 0.256 0.744 24 H 0.186 0.814 25 H 0.194 0.806 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.133 -12.239 -0.026 12.423 hybrid contribution -1.075 0.882 0.210 1.407 sum -3.207 -11.356 0.184 11.802 Atomic orbital electron populations 1.69667 1.07293 1.31773 1.41902 1.26499 0.96561 1.03454 0.93216 0.84633 0.78479 0.75039 0.79034 1.19173 1.18678 1.18738 1.20837 0.95376 0.81129 1.47306 0.85790 1.41015 1.09453 1.03710 1.50586 1.20582 0.92924 0.81557 0.97424 1.92663 0.96412 1.94166 1.84022 1.41266 1.09136 1.01205 1.75906 1.17419 0.94898 0.85104 0.95189 1.21216 1.02818 0.91352 0.98359 1.21010 0.93034 0.98974 0.97124 1.20814 0.98480 0.87466 1.01182 1.98352 1.76045 1.30713 1.97370 1.20463 0.94549 0.94218 0.97174 1.98346 1.46651 1.98012 1.60293 1.21160 0.95410 0.95071 0.98450 0.89295 0.75922 0.74358 0.81398 0.80602 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -39.02 13.05 21.66 0.28 -38.74 15 2 C 0.01 0.53 5.50 84.90 0.47 1.00 15 3 Si 1.01 37.01 29.55 68.60 2.03 39.04 15 4 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 5 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 7 C -0.31 -15.26 9.50 84.03 0.80 -14.46 15 8 H 0.12 6.72 6.22 -2.91 -0.02 6.70 15 9 N -0.45 -19.83 5.29 -193.58 -1.02 -20.85 15 10 C 0.44 19.11 7.71 179.06 1.38 20.49 15 11 S -0.80 -41.95 24.45 -56.49 -1.38 -43.33 15 12 N -0.64 -21.37 5.33 -189.99 -1.01 -22.38 15 13 C 0.17 5.47 5.91 38.16 0.23 5.70 15 14 C -0.12 -2.74 9.97 22.40 0.22 -2.51 15 15 C -0.08 -1.79 9.82 22.27 0.22 -1.57 15 16 C -0.05 -1.38 6.32 22.36 0.14 -1.24 15 17 Cl -0.05 -1.29 27.95 -2.72 -0.08 -1.37 15 18 C -0.03 -1.12 6.32 22.33 0.14 -0.98 15 19 Cl -0.06 -1.98 27.95 -2.72 -0.08 -2.05 15 20 C -0.08 -2.79 7.64 22.41 0.17 -2.62 15 21 H 0.30 12.16 8.31 -92.71 -0.77 11.39 15 22 H 0.40 16.29 7.92 -92.71 -0.73 15.56 15 23 H 0.42 10.53 8.84 -92.71 -0.82 9.71 15 24 H 0.17 2.79 8.06 -2.91 -0.02 2.77 15 25 H 0.18 2.56 8.06 -2.91 -0.02 2.54 15 26 H 0.13 5.69 6.27 -4.50 -0.03 5.66 15 Total: -1.00 -60.37 277.25 2.21 -58.16 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.30 Total: 27.73 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 3.77 Total: 3.80 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.75 Total: -81.98 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 16 Polarization: -41.95 SS G_CDS: -1.38 Total: -43.33 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.15 Total: -3.42 kcal Total: -60.37 2.21 -58.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201166864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.895 kcal (2) G-P(sol) polarization free energy of solvation -60.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds