Wall clock time and date at job start Tue Mar 31 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47397 * 2 1 4 4 C 1.53004 * 109.47075 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46747 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46747 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46747 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.46642 * 179.22852 * 7 6 5 9 9 C 1.46905 * 110.99614 * 287.83680 * 8 7 6 10 10 C 1.50694 * 109.47723 * 299.48956 * 9 8 7 11 11 H 1.08010 * 119.99634 * 4.26871 * 10 9 8 12 12 C 1.37868 * 120.00503 * 184.27098 * 10 9 8 13 13 N 1.31510 * 120.00398 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99738 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46931 * 90.00051 * 14 12 10 16 16 H 1.48501 * 109.47078 * 209.99706 * 14 12 10 17 17 H 1.48496 * 109.47389 * 330.00358 * 14 12 10 18 18 C 1.46899 * 110.99672 * 163.88966 * 8 7 6 19 19 C 1.50708 * 109.46962 * 189.99475 * 18 8 7 20 20 C 1.38231 * 119.99580 * 90.00061 * 19 18 8 21 21 C 1.38238 * 119.99618 * 179.97438 * 20 19 18 22 22 C 1.38235 * 120.00090 * 359.95621 * 21 20 19 23 23 C 1.38229 * 119.99770 * 0.27716 * 22 21 20 24 24 C 1.38231 * 119.99990 * 269.97624 * 19 18 8 25 25 H 1.09000 * 109.46863 * 60.00072 * 1 2 3 26 26 H 1.08996 * 109.47542 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47701 * 300.00489 * 1 2 3 28 28 H 1.09000 * 109.47179 * 239.99498 * 2 1 3 29 29 H 1.09000 * 109.46863 * 119.99928 * 2 1 3 30 30 H 1.08995 * 109.46962 * 59.99836 * 3 2 1 31 31 H 1.08995 * 109.46656 * 299.99596 * 3 2 1 32 32 H 1.09000 * 109.47276 * 59.99635 * 4 3 2 33 33 H 1.09000 * 109.47088 * 299.99869 * 4 3 2 34 34 H 1.09000 * 109.47472 * 59.99827 * 5 4 3 35 35 H 1.08995 * 109.46879 * 299.99610 * 5 4 3 36 36 H 1.09000 * 109.47276 * 59.99707 * 6 5 4 37 37 H 1.09000 * 109.47088 * 299.99941 * 6 5 4 38 38 H 1.08996 * 109.47410 * 59.22741 * 7 6 5 39 39 H 1.09001 * 109.47019 * 299.22351 * 7 6 5 40 40 H 1.08994 * 109.46692 * 59.49436 * 9 8 7 41 41 H 1.09005 * 109.46848 * 179.48836 * 9 8 7 42 42 H 0.96998 * 120.00357 * 180.02562 * 13 12 10 43 43 H 1.08999 * 109.47336 * 69.99718 * 18 8 7 44 44 H 1.08998 * 109.47267 * 309.99396 * 18 8 7 45 45 H 1.08001 * 120.00681 * 359.97438 * 20 19 18 46 46 H 1.08003 * 119.99770 * 179.97438 * 21 20 19 47 47 H 1.07997 * 119.99549 * 180.02562 * 22 21 20 48 48 H 1.08005 * 119.99610 * 179.72731 * 23 22 21 49 49 H 1.08000 * 120.00319 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8848 0.0000 7 6 6.1201 4.3273 0.0000 8 7 7.5890 4.3273 0.0186 9 6 8.0987 3.9130 1.3327 10 6 7.6124 4.8745 2.3862 11 1 6.9317 5.6694 2.1189 12 6 8.0364 4.7398 3.6911 13 7 7.6117 5.5786 4.6106 14 14 9.2132 3.3646 4.1534 15 1 10.6124 3.8412 4.0095 16 1 8.9711 2.9582 5.5611 17 1 8.9919 2.2014 3.2573 18 6 8.1203 5.6431 -0.3611 19 6 9.6095 5.5424 -0.5697 20 6 10.1130 5.2355 -1.8199 21 6 11.4789 5.1436 -2.0114 22 6 12.3413 5.3596 -0.9528 23 6 11.8375 5.6618 0.2984 24 6 10.4718 5.7575 0.4891 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9287 0.8909 34 1 3.7163 3.3993 0.8895 35 1 3.7171 3.3981 -0.8904 36 1 5.9734 2.3705 -0.8897 37 1 5.9734 2.3714 0.8902 38 1 5.7455 4.8452 0.8829 39 1 5.7681 4.8371 -0.8969 40 1 7.7389 2.9101 1.5622 41 1 9.1886 3.9130 1.3161 42 1 7.9103 5.4840 5.5286 43 1 7.9123 6.3616 0.4317 44 1 7.6456 5.9738 -1.2849 45 1 9.4393 5.0674 -2.6471 46 1 11.8723 4.9034 -2.9881 47 1 13.4085 5.2883 -1.1026 48 1 12.5112 5.8263 1.1265 49 1 10.0783 5.9973 1.4659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201761372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:19 Heat of formation + Delta-G solvation = -8.794222 kcal Electronic energy + Delta-G solvation = -22894.277887 eV Core-core repulsion = 19819.718248 eV Total energy + Delta-G solvation = -3074.559639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.97427 -37.18090 -36.13307 -33.51503 -32.44716 -31.15692 -30.42229 -29.28182 -27.63324 -25.77549 -24.01033 -22.64909 -22.01006 -21.28489 -20.87174 -20.25199 -19.28387 -16.99274 -16.18722 -15.90323 -15.04784 -14.94266 -14.70513 -14.42683 -14.23083 -13.95686 -13.80341 -13.28942 -12.96052 -12.86631 -12.72301 -12.41848 -12.18306 -11.91809 -11.86362 -11.63485 -11.34301 -11.30566 -11.11288 -10.87809 -10.83928 -10.60131 -10.50986 -10.46008 -10.40271 -10.32558 -10.12316 -9.85314 -9.73103 -9.51438 -8.61115 -8.40726 -8.25376 -7.15353 -6.12170 -4.10770 1.83371 1.89309 3.25995 3.34391 3.39712 4.22844 4.38630 4.70905 4.89120 5.04153 5.09782 5.22215 5.25653 5.31525 5.34021 5.43702 5.47215 5.53515 5.59041 5.68032 5.72254 5.80375 5.85959 5.89229 5.96497 6.00870 6.03370 6.08219 6.16647 6.19053 6.25612 6.31915 6.36526 6.43090 6.46190 6.56209 6.58649 6.67480 6.83409 6.88312 6.94529 6.98288 7.03353 7.16413 7.26155 7.51307 7.58150 8.05988 8.13293 8.43647 8.90328 9.51639 11.00485 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003888 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.024647 B = 7199.504851 C = 8671.592544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.108 4.108 7 C 0.058 3.942 8 N -0.530 5.530 9 C 0.149 3.851 10 C -0.545 4.545 11 H 0.075 0.925 12 C 0.076 3.924 13 N -0.898 5.898 14 Si 0.870 3.130 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.264 1.264 18 C 0.094 3.906 19 C -0.058 4.058 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.098 4.098 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 -5.225 -11.556 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.070 4.070 8 N -0.253 5.253 9 C 0.022 3.978 10 C -0.583 4.583 11 H 0.093 0.907 12 C -0.127 4.127 13 N -0.537 5.537 14 Si 0.697 3.303 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.034 4.034 19 C -0.059 4.059 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.117 4.117 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.110 -5.528 -11.713 13.320 hybrid contribution 0.432 -0.135 1.149 1.235 sum -2.678 -5.662 -10.564 12.282 Atomic orbital electron populations 1.21782 0.96226 1.01268 1.01725 1.21550 0.95528 0.97400 1.01881 1.21637 0.96011 0.96252 1.01896 1.21593 0.94660 0.97483 1.01856 1.21544 0.96230 0.96047 1.01632 1.21479 0.93649 0.97451 1.02036 1.21989 0.88513 0.96351 1.00188 1.62486 1.06975 1.24979 1.30840 1.20260 0.95869 0.96288 0.85389 1.21626 1.29191 1.14766 0.92750 0.90724 1.24895 0.95849 0.95491 0.96452 1.69918 1.44653 1.36942 1.02151 0.86932 0.81931 0.83630 0.77839 1.20030 1.21370 1.18882 1.20937 0.90121 0.92583 0.99771 1.19873 0.95803 0.97283 0.92928 1.20980 0.94856 0.99811 0.97005 1.20997 0.93660 1.01971 0.98460 1.21006 0.99007 1.01602 0.93418 1.21133 0.95621 1.01025 0.96912 1.21423 0.92842 0.97721 0.99675 0.92906 0.93068 0.92782 0.92246 0.92103 0.92051 0.92282 0.92365 0.92062 0.91982 0.92664 0.92492 0.91667 0.92792 0.93218 0.95476 0.95241 0.92731 0.92379 0.92066 0.86600 0.86911 0.87005 0.86724 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.15 0.37 -0.94 16 2 C -0.13 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.12 -1.30 5.21 -26.73 -0.14 -1.44 16 4 C -0.12 -1.46 5.21 -26.73 -0.14 -1.60 16 5 C -0.12 -1.64 5.21 -26.73 -0.14 -1.78 16 6 C -0.11 -1.81 5.28 -26.73 -0.14 -1.95 16 7 C 0.06 1.08 4.80 -3.82 -0.02 1.06 16 8 N -0.53 -10.80 4.66 -237.51 -1.11 -11.90 16 9 C 0.15 3.49 3.68 -4.98 -0.02 3.48 16 10 C -0.54 -14.49 7.72 -34.45 -0.27 -14.75 16 11 H 0.07 2.16 6.19 -52.48 -0.33 1.84 16 12 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 14 Si 0.87 21.26 27.39 -169.99 -4.66 16.60 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.26 -6.33 6.67 56.52 0.38 -5.95 16 18 C 0.09 1.79 4.94 -4.97 -0.02 1.76 16 19 C -0.06 -1.08 4.89 -104.62 -0.51 -1.59 16 20 C -0.11 -1.74 9.70 -39.58 -0.38 -2.12 16 21 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 22 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 23 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 24 C -0.10 -1.88 7.91 -39.59 -0.31 -2.20 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.23 6.73 -51.93 -0.35 0.88 16 38 H 0.05 1.16 6.12 -51.93 -0.32 0.84 16 39 H 0.05 0.83 7.81 -51.93 -0.41 0.42 16 40 H 0.03 0.67 6.03 -51.93 -0.31 0.35 16 41 H 0.03 0.72 5.12 -51.93 -0.27 0.45 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.06 1.25 6.56 -51.93 -0.34 0.91 16 44 H 0.06 1.03 7.80 -51.93 -0.41 0.62 16 45 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 47 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 48 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 49 H 0.13 2.88 7.82 -52.49 -0.41 2.47 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -28.50 381.33 -11.47 -39.98 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -9.06 Total: 4.12 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -3.18 Total: -28.68 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.33 Total: -37.77 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.66 Total: 16.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.50 -11.47 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201761372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.185 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds