Wall clock time and date at job start Tue Mar 31 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47397 * 2 1 4 4 C 1.53004 * 109.47075 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46747 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46747 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46747 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.46642 * 179.22852 * 7 6 5 9 9 C 1.46905 * 110.99614 * 287.83680 * 8 7 6 10 10 C 1.50694 * 109.47723 * 299.48956 * 9 8 7 11 11 H 1.08010 * 119.99634 * 4.26871 * 10 9 8 12 12 C 1.37868 * 120.00503 * 184.27098 * 10 9 8 13 13 N 1.31510 * 120.00398 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99738 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46931 * 90.00051 * 14 12 10 16 16 H 1.48501 * 109.47078 * 209.99706 * 14 12 10 17 17 H 1.48496 * 109.47389 * 330.00358 * 14 12 10 18 18 C 1.46899 * 110.99672 * 163.88966 * 8 7 6 19 19 C 1.50708 * 109.46962 * 189.99475 * 18 8 7 20 20 C 1.38231 * 119.99580 * 90.00061 * 19 18 8 21 21 C 1.38238 * 119.99618 * 179.97438 * 20 19 18 22 22 C 1.38235 * 120.00090 * 359.95621 * 21 20 19 23 23 C 1.38229 * 119.99770 * 0.27716 * 22 21 20 24 24 C 1.38231 * 119.99990 * 269.97624 * 19 18 8 25 25 H 1.09000 * 109.46863 * 60.00072 * 1 2 3 26 26 H 1.08996 * 109.47542 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47701 * 300.00489 * 1 2 3 28 28 H 1.09000 * 109.47179 * 239.99498 * 2 1 3 29 29 H 1.09000 * 109.46863 * 119.99928 * 2 1 3 30 30 H 1.08995 * 109.46962 * 59.99836 * 3 2 1 31 31 H 1.08995 * 109.46656 * 299.99596 * 3 2 1 32 32 H 1.09000 * 109.47276 * 59.99635 * 4 3 2 33 33 H 1.09000 * 109.47088 * 299.99869 * 4 3 2 34 34 H 1.09000 * 109.47472 * 59.99827 * 5 4 3 35 35 H 1.08995 * 109.46879 * 299.99610 * 5 4 3 36 36 H 1.09000 * 109.47276 * 59.99707 * 6 5 4 37 37 H 1.09000 * 109.47088 * 299.99941 * 6 5 4 38 38 H 1.08996 * 109.47410 * 59.22741 * 7 6 5 39 39 H 1.09001 * 109.47019 * 299.22351 * 7 6 5 40 40 H 1.08994 * 109.46692 * 59.49436 * 9 8 7 41 41 H 1.09005 * 109.46848 * 179.48836 * 9 8 7 42 42 H 0.96998 * 120.00357 * 180.02562 * 13 12 10 43 43 H 1.08999 * 109.47336 * 69.99718 * 18 8 7 44 44 H 1.08998 * 109.47267 * 309.99396 * 18 8 7 45 45 H 1.08001 * 120.00681 * 359.97438 * 20 19 18 46 46 H 1.08003 * 119.99770 * 179.97438 * 21 20 19 47 47 H 1.07997 * 119.99549 * 180.02562 * 22 21 20 48 48 H 1.08005 * 119.99610 * 179.72731 * 23 22 21 49 49 H 1.08000 * 120.00319 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8848 0.0000 7 6 6.1201 4.3273 0.0000 8 7 7.5890 4.3273 0.0186 9 6 8.0987 3.9130 1.3327 10 6 7.6124 4.8745 2.3862 11 1 6.9317 5.6694 2.1189 12 6 8.0364 4.7398 3.6911 13 7 7.6117 5.5786 4.6106 14 14 9.2132 3.3646 4.1534 15 1 10.6124 3.8412 4.0095 16 1 8.9711 2.9582 5.5611 17 1 8.9919 2.2014 3.2573 18 6 8.1203 5.6431 -0.3611 19 6 9.6095 5.5424 -0.5697 20 6 10.1130 5.2355 -1.8199 21 6 11.4789 5.1436 -2.0114 22 6 12.3413 5.3596 -0.9528 23 6 11.8375 5.6618 0.2984 24 6 10.4718 5.7575 0.4891 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9287 0.8909 34 1 3.7163 3.3993 0.8895 35 1 3.7171 3.3981 -0.8904 36 1 5.9734 2.3705 -0.8897 37 1 5.9734 2.3714 0.8902 38 1 5.7455 4.8452 0.8829 39 1 5.7681 4.8371 -0.8969 40 1 7.7389 2.9101 1.5622 41 1 9.1886 3.9130 1.3161 42 1 7.9103 5.4840 5.5286 43 1 7.9123 6.3616 0.4317 44 1 7.6456 5.9738 -1.2849 45 1 9.4393 5.0674 -2.6471 46 1 11.8723 4.9034 -2.9881 47 1 13.4085 5.2883 -1.1026 48 1 12.5112 5.8263 1.1265 49 1 10.0783 5.9973 1.4659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201761372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:18 Heat of formation + Delta-G solvation = -22.477806 kcal Electronic energy + Delta-G solvation = -22894.871252 eV Core-core repulsion = 19819.718248 eV Total energy + Delta-G solvation = -3075.153004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35754 -38.62623 -37.22338 -34.80358 -34.38846 -32.46094 -31.70163 -30.61690 -29.38215 -26.97275 -25.66584 -24.08667 -23.29487 -22.41254 -21.85115 -21.50880 -21.01279 -19.04348 -17.48585 -17.01060 -16.59203 -16.45475 -16.24240 -15.90547 -15.66177 -15.22222 -14.85848 -14.50077 -14.40289 -14.21906 -13.99174 -13.96817 -13.43919 -13.31631 -13.11031 -12.92465 -12.87147 -12.72187 -12.58315 -12.28155 -12.08190 -12.02677 -11.76528 -11.76149 -11.73443 -11.68429 -11.58618 -11.36900 -11.25286 -11.08346 -10.77653 -9.69729 -9.58252 -8.92617 -8.31916 -6.33512 0.55069 0.60874 1.28949 1.30980 1.41868 2.30415 2.90957 3.04172 3.45010 3.88181 4.01981 4.03341 4.11883 4.19956 4.21247 4.26416 4.35932 4.38918 4.46697 4.49451 4.60481 4.70980 4.73784 4.77888 4.82955 4.86963 4.90759 4.94084 5.01752 5.04592 5.08076 5.13185 5.15918 5.20635 5.24970 5.26167 5.29563 5.35323 5.36646 5.48824 5.50166 5.57968 5.59903 5.66890 5.71263 5.90819 6.11296 6.23649 6.36128 6.45881 6.71800 7.31984 8.84204 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003888 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.024647 B = 7199.504851 C = 8671.592544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.114 4.114 5 C -0.110 4.110 6 C -0.100 4.100 7 C 0.058 3.942 8 N -0.523 5.523 9 C 0.163 3.837 10 C -0.531 4.531 11 H 0.037 0.963 12 C 0.021 3.979 13 N -0.945 5.945 14 Si 0.929 3.071 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.253 1.253 18 C 0.098 3.902 19 C -0.080 4.080 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.139 4.139 24 C -0.127 4.127 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.016 0.984 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.020 0.980 44 H 0.088 0.912 45 H 0.137 0.863 46 H 0.152 0.848 47 H 0.148 0.852 48 H 0.124 0.876 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -7.066 -14.645 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.069 4.069 8 N -0.245 5.245 9 C 0.036 3.964 10 C -0.570 4.570 11 H 0.056 0.944 12 C -0.177 4.177 13 N -0.585 5.585 14 Si 0.753 3.247 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.177 1.177 18 C -0.030 4.030 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.157 4.157 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.106 0.894 45 H 0.155 0.845 46 H 0.170 0.830 47 H 0.165 0.835 48 H 0.142 0.858 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.911 -7.372 -14.820 16.662 hybrid contribution 0.056 0.539 2.016 2.088 sum -1.854 -6.833 -12.804 14.631 Atomic orbital electron populations 1.21775 0.95321 1.01963 1.01872 1.21541 0.96344 0.96427 1.01993 1.21606 0.94738 0.97233 1.01938 1.21550 0.95810 0.95959 1.01840 1.21490 0.94247 0.97493 1.01610 1.21415 0.95445 0.95619 1.01327 1.22060 0.87487 0.97747 0.99653 1.62531 1.07883 1.25753 1.28377 1.19994 0.95510 0.94899 0.86030 1.21759 1.27608 1.13984 0.93681 0.94448 1.25675 0.97669 0.97901 0.96482 1.70053 1.46705 1.39179 1.02604 0.85978 0.80060 0.80967 0.77692 1.19106 1.20977 1.17689 1.20931 0.91647 0.90915 0.99505 1.19850 0.94825 0.99190 0.94142 1.21223 0.96283 0.98978 0.96172 1.21461 0.92806 0.99814 1.00054 1.21414 1.01005 0.99616 0.92239 1.21320 0.94525 1.01149 0.98665 1.21222 0.94521 1.00457 0.98395 0.92339 0.92133 0.93086 0.91534 0.92616 0.92901 0.91365 0.91186 0.93248 0.93791 0.90876 0.90974 0.94373 0.96549 0.90577 0.96094 0.95508 0.92687 0.96209 0.89355 0.84467 0.83001 0.83465 0.85764 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.13 -2.23 5.93 30.59 0.18 -2.05 16 3 C -0.12 -2.40 5.21 30.60 0.16 -2.24 16 4 C -0.11 -2.69 5.21 30.60 0.16 -2.53 16 5 C -0.11 -3.05 5.21 30.60 0.16 -2.89 16 6 C -0.10 -3.33 5.28 30.60 0.16 -3.16 16 7 C 0.06 2.22 4.80 86.30 0.41 2.63 16 8 N -0.52 -21.57 4.66 -905.35 -4.22 -25.79 16 9 C 0.16 7.90 3.68 85.55 0.31 8.21 16 10 C -0.53 -29.96 7.72 25.60 0.20 -29.76 16 11 H 0.04 2.35 6.19 -2.91 -0.02 2.33 16 12 C 0.02 1.21 5.47 84.65 0.46 1.68 16 13 N -0.94 -58.89 13.96 21.44 0.30 -58.59 16 14 Si 0.93 44.94 27.39 68.60 1.88 46.82 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.25 -11.70 6.67 99.48 0.66 -11.03 16 18 C 0.10 3.81 4.94 85.56 0.42 4.23 16 19 C -0.08 -2.92 4.89 -19.87 -0.10 -3.01 16 20 C -0.11 -3.17 9.70 22.27 0.22 -2.95 16 21 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 22 C -0.12 -3.25 10.05 22.27 0.22 -3.02 16 23 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 24 C -0.13 -5.01 7.91 22.27 0.18 -4.83 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 37 H 0.04 1.46 6.73 -2.39 -0.02 1.44 16 38 H 0.02 0.74 6.12 -2.39 -0.01 0.73 16 39 H 0.08 2.47 7.81 -2.39 -0.02 2.45 16 40 H 0.02 1.05 6.03 -2.39 -0.01 1.03 16 41 H 0.03 1.33 5.12 -2.38 -0.01 1.32 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.02 0.91 6.56 -2.39 -0.02 0.90 16 44 H 0.09 2.90 7.80 -2.39 -0.02 2.88 16 45 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 46 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 47 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 48 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 49 H 0.09 4.34 7.82 -2.91 -0.02 4.32 16 Total: -1.00 -65.28 381.33 3.10 -62.17 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.83 Total: 23.86 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 4.31 Total: -48.47 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -3.92 Total: -84.39 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -65.28 3.10 -62.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201761372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.695 kcal (2) G-P(sol) polarization free energy of solvation -65.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds