Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46862 * 2 1 4 4 C 1.53005 * 109.46613 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.46792 * 179.97438 * 4 3 2 6 6 C 1.46903 * 111.00057 * 66.04370 * 5 4 3 7 7 C 1.50700 * 109.47175 * 201.71801 * 6 5 4 8 8 H 1.07997 * 119.99836 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99954 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00038 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99861 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47220 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47147 * 119.99889 * 11 9 7 14 14 H 1.48505 * 109.46942 * 239.99997 * 11 9 7 15 15 C 1.46899 * 110.99880 * 189.99380 * 5 4 3 16 16 C 1.50702 * 109.46877 * 162.75047 * 15 5 4 17 17 C 1.38231 * 119.99996 * 283.09409 * 16 15 5 18 18 C 1.50698 * 120.00373 * 359.97438 * 17 16 15 19 19 C 1.38238 * 119.99859 * 179.78906 * 17 16 15 20 20 C 1.38234 * 119.99880 * 0.44458 * 19 17 16 21 21 C 1.50704 * 119.99943 * 179.83423 * 20 19 17 22 22 C 1.38237 * 119.99818 * 359.80649 * 20 19 17 23 23 C 1.38231 * 120.00230 * 359.97438 * 22 20 19 24 24 C 1.50700 * 120.00063 * 179.97438 * 23 22 20 25 25 H 1.09000 * 109.47502 * 59.99731 * 1 2 3 26 26 H 1.08996 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47255 * 300.00016 * 1 2 3 28 28 H 1.08998 * 109.47255 * 239.99984 * 2 1 3 29 29 H 1.08994 * 109.47225 * 119.99900 * 2 1 3 30 30 H 1.08993 * 109.47519 * 60.00605 * 3 2 1 31 31 H 1.09003 * 109.47001 * 299.99694 * 3 2 1 32 32 H 1.08992 * 109.47456 * 60.00195 * 4 3 2 33 33 H 1.09003 * 109.46849 * 299.99373 * 4 3 2 34 34 H 1.08998 * 109.46988 * 321.71681 * 6 5 4 35 35 H 1.08998 * 109.46837 * 81.71676 * 6 5 4 36 36 H 0.97004 * 120.00030 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47369 * 282.75215 * 15 5 4 38 38 H 1.09002 * 109.47159 * 42.75402 * 15 5 4 39 39 H 1.09005 * 109.47226 * 89.99927 * 18 17 16 40 40 H 1.08997 * 109.47553 * 210.00366 * 18 17 16 41 41 H 1.09004 * 109.47222 * 330.00024 * 18 17 16 42 42 H 1.08001 * 120.00326 * 180.26950 * 19 17 16 43 43 H 1.08994 * 109.47085 * 269.97256 * 21 20 19 44 44 H 1.09002 * 109.47035 * 29.97888 * 21 20 19 45 45 H 1.09000 * 109.46648 * 149.97362 * 21 20 19 46 46 H 1.07998 * 119.99497 * 180.02562 * 22 20 19 47 47 H 1.08996 * 109.47521 * 264.31785 * 24 23 22 48 48 H 1.09006 * 109.46799 * 24.31560 * 24 23 22 49 49 H 1.08997 * 109.46904 * 144.30829 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0013 6 6 3.7106 3.5099 1.2520 7 6 3.7299 5.0010 1.0343 8 1 3.9762 5.4016 0.0622 9 6 3.4329 5.8536 2.0763 10 7 3.1324 5.3657 3.2601 11 14 3.4560 7.7019 1.8063 12 1 3.8210 7.9916 0.3964 13 1 2.1111 8.2611 2.0950 14 1 4.4552 8.3221 2.7132 15 6 5.5084 2.8736 -0.2399 16 6 5.9054 4.2676 -0.6524 17 6 5.6539 4.7057 -1.9391 18 6 4.9831 3.7892 -2.9296 19 6 6.0142 5.9859 -2.3162 20 6 6.6343 6.8248 -1.4092 21 6 7.0304 8.2192 -1.8214 22 6 6.8905 6.3849 -0.1240 23 6 6.5261 5.1063 0.2544 24 6 6.8060 4.6265 1.6553 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8908 33 1 3.9336 0.9286 0.8892 34 1 2.7141 3.2017 1.5681 35 1 4.4343 3.2459 2.0231 36 1 2.9238 5.9656 3.9933 37 1 6.0361 2.6010 0.6741 38 1 5.7685 2.1722 -1.0326 39 1 3.9024 3.9179 -2.8697 40 1 5.3226 4.0315 -3.9366 41 1 5.2392 2.7550 -2.6989 42 1 5.8137 6.3297 -3.3202 43 1 8.0434 8.2052 -2.2236 44 1 6.3415 8.5821 -2.5842 45 1 6.9927 8.8788 -0.9545 46 1 7.3746 7.0405 0.5846 47 1 7.7440 4.0715 1.6687 48 1 6.8814 5.4836 2.3246 49 1 5.9950 3.9776 1.9859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203744840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = 3.290978 kcal Electronic energy + Delta-G solvation = -24634.375023 eV Core-core repulsion = 21560.339438 eV Total energy + Delta-G solvation = -3074.035586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.40928 -36.99118 -34.51850 -33.03787 -32.67523 -32.23001 -28.91937 -27.79922 -27.29505 -26.13685 -25.88426 -23.38328 -22.82853 -21.04209 -20.03346 -19.89929 -19.01266 -16.44306 -15.61366 -15.30746 -15.04482 -14.60654 -14.37039 -13.73919 -13.54955 -13.47954 -13.39042 -12.89717 -12.63263 -12.51967 -12.38703 -12.20908 -12.13339 -12.00902 -11.94445 -11.80573 -11.50494 -11.07218 -10.98161 -10.80233 -10.79575 -10.64868 -10.59691 -10.46253 -10.36978 -10.10671 -9.98673 -9.86989 -9.54711 -9.09878 -8.31139 -7.73124 -7.48443 -7.16530 -5.91260 -3.86044 2.13144 2.20872 3.36087 3.44525 3.54223 4.36908 4.56075 4.98395 5.27741 5.37159 5.39096 5.43162 5.45068 5.48321 5.57094 5.68978 5.74109 5.80923 5.86445 5.91979 5.98410 6.01582 6.04501 6.12208 6.14486 6.16715 6.19146 6.24071 6.28726 6.29624 6.36006 6.37433 6.42102 6.43234 6.55615 6.72722 6.78920 6.87595 6.94668 7.08206 7.24456 7.27704 7.35191 7.42037 7.60707 7.85225 7.98638 8.20683 8.26104 8.64408 9.22106 9.75786 11.19485 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.006605 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.184897 B = 4238.065624 C = 5360.898252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.059 3.941 5 N -0.530 5.530 6 C 0.187 3.813 7 C -0.478 4.478 8 H 0.071 0.929 9 C 0.058 3.942 10 N -0.904 5.904 11 Si 0.876 3.124 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.287 1.287 15 C 0.101 3.899 16 C -0.048 4.048 17 C -0.065 4.065 18 C -0.100 4.100 19 C -0.140 4.140 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.136 4.136 23 C -0.026 4.026 24 C -0.115 4.115 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.018 0.982 34 H 0.032 0.968 35 H -0.006 1.006 36 H 0.256 0.744 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 -5.075 -8.549 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.069 4.069 5 N -0.254 5.254 6 C 0.063 3.937 7 C -0.517 4.517 8 H 0.089 0.911 9 C -0.141 4.141 10 N -0.545 5.545 11 Si 0.704 3.296 12 H -0.191 1.191 13 H -0.216 1.216 14 H -0.213 1.213 15 C -0.027 4.027 16 C -0.048 4.048 17 C -0.065 4.065 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.093 4.093 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.026 4.026 24 C -0.172 4.172 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.012 0.988 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.174 -4.774 -8.757 10.812 hybrid contribution 0.203 0.894 0.831 1.238 sum 4.376 -3.880 -7.926 9.850 Atomic orbital electron populations 1.21749 0.96243 1.00789 1.01968 1.21493 0.95569 0.97698 1.01188 1.21621 0.95120 0.95234 1.03302 1.22012 0.95407 0.90787 0.98743 1.62160 1.10864 1.12566 1.39824 1.19957 0.95877 0.94254 0.83652 1.21302 1.43700 0.90076 0.96631 0.91137 1.24825 0.96074 0.98007 0.95243 1.69962 1.48867 1.34335 1.01308 0.86731 0.77248 0.86878 0.78703 1.19130 1.21561 1.21349 1.20894 0.89805 0.93276 0.98675 1.19176 0.97321 0.95948 0.92399 1.19490 0.97988 0.94441 0.94608 1.20646 1.00885 0.98252 0.95839 1.20586 1.02495 0.93949 0.98744 1.19625 0.99818 0.95571 0.94244 1.20698 1.00687 0.93760 1.01260 1.20677 1.03324 0.95960 0.95449 1.19481 0.95179 0.93061 0.94894 1.20925 1.01103 1.01981 0.93151 0.92861 0.93416 0.92686 0.92648 0.92573 0.91078 0.91585 0.92609 0.96347 0.95034 0.98813 0.93425 0.94707 0.92077 0.90899 0.93404 0.92088 0.87471 0.92039 0.92236 0.92244 0.87471 0.93359 0.92509 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.61 5.93 -26.73 -0.16 -1.76 16 3 C -0.12 -1.89 5.19 -26.73 -0.14 -2.03 16 4 C 0.06 1.01 4.94 -3.82 -0.02 0.99 16 5 N -0.53 -10.73 4.41 -237.51 -1.05 -11.78 16 6 C 0.19 4.58 4.21 -4.97 -0.02 4.56 16 7 C -0.48 -12.72 6.11 -34.44 -0.21 -12.94 16 8 H 0.07 1.96 5.84 -52.49 -0.31 1.65 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 11 Si 0.88 22.15 29.54 -169.99 -5.02 17.13 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 C 0.10 1.89 4.16 -4.98 -0.02 1.87 16 16 C -0.05 -0.94 3.31 -104.63 -0.35 -1.29 16 17 C -0.06 -1.20 5.61 -104.63 -0.59 -1.78 16 18 C -0.10 -1.56 9.58 36.00 0.34 -1.22 16 19 C -0.14 -2.50 9.36 -39.58 -0.37 -2.87 16 20 C -0.09 -1.67 5.88 -104.62 -0.62 -2.29 16 21 C -0.11 -1.57 10.01 36.01 0.36 -1.21 16 22 C -0.14 -2.64 9.33 -39.58 -0.37 -3.01 16 23 C -0.03 -0.52 4.18 -104.63 -0.44 -0.96 16 24 C -0.12 -2.28 8.56 36.01 0.31 -1.97 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.36 6.24 -51.93 -0.32 1.03 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 33 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.03 0.84 5.85 -51.93 -0.30 0.53 16 35 H -0.01 -0.15 5.80 -51.93 -0.30 -0.45 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.03 0.67 5.85 -51.93 -0.30 0.36 16 38 H 0.06 1.01 6.21 -51.93 -0.32 0.68 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.06 0.90 6.19 -51.93 -0.32 0.58 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 45 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 46 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 49 H 0.09 2.04 3.78 -51.93 -0.20 1.84 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -28.81 372.05 -10.41 -39.22 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.67 Total: 1.16 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.01 Total: -25.84 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.31 Total: -37.27 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.81 -10.41 -39.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203744840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.512 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds