Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46862 * 2 1 4 4 C 1.53005 * 109.46613 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.46792 * 179.97438 * 4 3 2 6 6 C 1.46903 * 111.00057 * 66.04370 * 5 4 3 7 7 C 1.50700 * 109.47175 * 201.71801 * 6 5 4 8 8 H 1.07997 * 119.99836 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99954 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00038 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99861 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47220 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47147 * 119.99889 * 11 9 7 14 14 H 1.48505 * 109.46942 * 239.99997 * 11 9 7 15 15 C 1.46899 * 110.99880 * 189.99380 * 5 4 3 16 16 C 1.50702 * 109.46877 * 162.75047 * 15 5 4 17 17 C 1.38231 * 119.99996 * 283.09409 * 16 15 5 18 18 C 1.50698 * 120.00373 * 359.97438 * 17 16 15 19 19 C 1.38238 * 119.99859 * 179.78906 * 17 16 15 20 20 C 1.38234 * 119.99880 * 0.44458 * 19 17 16 21 21 C 1.50704 * 119.99943 * 179.83423 * 20 19 17 22 22 C 1.38237 * 119.99818 * 359.80649 * 20 19 17 23 23 C 1.38231 * 120.00230 * 359.97438 * 22 20 19 24 24 C 1.50700 * 120.00063 * 179.97438 * 23 22 20 25 25 H 1.09000 * 109.47502 * 59.99731 * 1 2 3 26 26 H 1.08996 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47255 * 300.00016 * 1 2 3 28 28 H 1.08998 * 109.47255 * 239.99984 * 2 1 3 29 29 H 1.08994 * 109.47225 * 119.99900 * 2 1 3 30 30 H 1.08993 * 109.47519 * 60.00605 * 3 2 1 31 31 H 1.09003 * 109.47001 * 299.99694 * 3 2 1 32 32 H 1.08992 * 109.47456 * 60.00195 * 4 3 2 33 33 H 1.09003 * 109.46849 * 299.99373 * 4 3 2 34 34 H 1.08998 * 109.46988 * 321.71681 * 6 5 4 35 35 H 1.08998 * 109.46837 * 81.71676 * 6 5 4 36 36 H 0.97004 * 120.00030 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47369 * 282.75215 * 15 5 4 38 38 H 1.09002 * 109.47159 * 42.75402 * 15 5 4 39 39 H 1.09005 * 109.47226 * 89.99927 * 18 17 16 40 40 H 1.08997 * 109.47553 * 210.00366 * 18 17 16 41 41 H 1.09004 * 109.47222 * 330.00024 * 18 17 16 42 42 H 1.08001 * 120.00326 * 180.26950 * 19 17 16 43 43 H 1.08994 * 109.47085 * 269.97256 * 21 20 19 44 44 H 1.09002 * 109.47035 * 29.97888 * 21 20 19 45 45 H 1.09000 * 109.46648 * 149.97362 * 21 20 19 46 46 H 1.07998 * 119.99497 * 180.02562 * 22 20 19 47 47 H 1.08996 * 109.47521 * 264.31785 * 24 23 22 48 48 H 1.09006 * 109.46799 * 24.31560 * 24 23 22 49 49 H 1.08997 * 109.46904 * 144.30829 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0013 6 6 3.7106 3.5099 1.2520 7 6 3.7299 5.0010 1.0343 8 1 3.9762 5.4016 0.0622 9 6 3.4329 5.8536 2.0763 10 7 3.1324 5.3657 3.2601 11 14 3.4560 7.7019 1.8063 12 1 3.8210 7.9916 0.3964 13 1 2.1111 8.2611 2.0950 14 1 4.4552 8.3221 2.7132 15 6 5.5084 2.8736 -0.2399 16 6 5.9054 4.2676 -0.6524 17 6 5.6539 4.7057 -1.9391 18 6 4.9831 3.7892 -2.9296 19 6 6.0142 5.9859 -2.3162 20 6 6.6343 6.8248 -1.4092 21 6 7.0304 8.2192 -1.8214 22 6 6.8905 6.3849 -0.1240 23 6 6.5261 5.1063 0.2544 24 6 6.8060 4.6265 1.6553 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8908 33 1 3.9336 0.9286 0.8892 34 1 2.7141 3.2017 1.5681 35 1 4.4343 3.2459 2.0231 36 1 2.9238 5.9656 3.9933 37 1 6.0361 2.6010 0.6741 38 1 5.7685 2.1722 -1.0326 39 1 3.9024 3.9179 -2.8697 40 1 5.3226 4.0315 -3.9366 41 1 5.2392 2.7550 -2.6989 42 1 5.8137 6.3297 -3.3202 43 1 8.0434 8.2052 -2.2236 44 1 6.3415 8.5821 -2.5842 45 1 6.9927 8.8788 -0.9545 46 1 7.3746 7.0405 0.5846 47 1 7.7440 4.0715 1.6687 48 1 6.8814 5.4836 2.3246 49 1 5.9950 3.9776 1.9859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203744840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -10.341605 kcal Electronic energy + Delta-G solvation = -24634.966177 eV Core-core repulsion = 21560.339438 eV Total energy + Delta-G solvation = -3074.626739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86463 -38.50170 -35.81228 -34.72182 -34.15450 -33.90740 -30.21327 -29.62564 -28.65136 -27.57356 -27.37063 -24.97934 -24.42522 -22.34004 -21.45735 -21.38088 -20.46299 -18.48723 -17.13686 -16.81426 -16.44532 -16.25877 -16.11704 -15.13819 -15.02315 -14.89917 -14.72839 -14.26152 -13.93233 -13.88596 -13.82157 -13.76077 -13.60974 -13.36502 -13.30796 -13.22444 -13.03771 -12.91182 -12.53429 -12.37039 -12.29269 -12.15950 -12.02489 -11.89612 -11.75973 -11.58151 -11.47419 -11.31128 -11.20242 -11.08661 -10.45609 -9.17273 -8.97813 -8.82803 -8.06666 -6.05029 0.69833 0.75732 1.32382 1.36526 1.49021 2.45389 2.93787 3.28524 3.52755 4.01456 4.06850 4.09648 4.18403 4.18990 4.31686 4.35238 4.44682 4.53737 4.57857 4.62940 4.68612 4.71308 4.75867 4.82585 4.86292 4.87999 4.89381 4.98647 4.99375 5.05048 5.07276 5.11350 5.15139 5.16485 5.25810 5.34086 5.37222 5.43311 5.51720 5.56693 5.58025 5.66313 5.85086 5.86945 5.89911 6.09561 6.26379 6.43309 6.51380 6.77153 7.07705 7.59459 9.04038 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.006605 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.184897 B = 4238.065624 C = 5360.898252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.109 4.109 4 C 0.058 3.942 5 N -0.533 5.533 6 C 0.205 3.795 7 C -0.462 4.462 8 H 0.062 0.938 9 C 0.015 3.985 10 N -0.935 5.935 11 Si 0.922 3.078 12 H -0.266 1.266 13 H -0.289 1.289 14 H -0.284 1.284 15 C 0.103 3.897 16 C -0.069 4.069 17 C -0.073 4.073 18 C -0.094 4.094 19 C -0.148 4.148 20 C -0.099 4.099 21 C -0.106 4.106 22 C -0.157 4.157 23 C -0.047 4.047 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.014 0.986 34 H 0.006 0.994 35 H -0.029 1.029 36 H 0.255 0.745 37 H 0.025 0.975 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.133 0.867 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.044 0.956 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 -5.428 -11.155 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.147 4.147 4 C -0.070 4.070 5 N -0.257 5.257 6 C 0.080 3.920 7 C -0.501 4.501 8 H 0.080 0.920 9 C -0.182 4.182 10 N -0.579 5.579 11 Si 0.750 3.250 12 H -0.190 1.190 13 H -0.216 1.216 14 H -0.211 1.211 15 C -0.024 4.024 16 C -0.070 4.070 17 C -0.074 4.074 18 C -0.150 4.150 19 C -0.165 4.165 20 C -0.099 4.099 21 C -0.163 4.163 22 C -0.175 4.175 23 C -0.048 4.048 24 C -0.164 4.164 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.032 0.968 34 H 0.024 0.976 35 H -0.011 1.011 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.151 0.849 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.129 0.871 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.681 -5.133 -11.380 13.333 hybrid contribution 0.090 0.978 1.584 1.864 sum 4.772 -4.154 -9.796 11.662 Atomic orbital electron populations 1.21746 0.95455 1.02046 1.01445 1.21443 0.96247 0.95280 1.02255 1.21547 0.94714 0.97234 1.01175 1.22139 0.95771 0.89132 0.99920 1.62077 1.12250 1.14359 1.36974 1.19568 0.93791 0.93686 0.84998 1.21378 1.41803 0.91141 0.95753 0.92021 1.25385 0.96488 1.01061 0.95242 1.70058 1.50578 1.35264 1.01971 0.85995 0.77048 0.83463 0.78460 1.19040 1.21592 1.21070 1.20928 0.88450 0.93842 0.99151 1.19358 0.98133 0.96361 0.93146 1.19890 0.97513 0.95311 0.94638 1.20638 0.99729 0.98146 0.96530 1.20966 1.01912 0.93729 0.99938 1.20068 0.98921 0.97257 0.93663 1.20754 1.02361 0.91505 1.01634 1.20882 1.04177 0.95885 0.96563 1.19644 0.96280 0.93888 0.94969 1.20804 1.01255 1.01109 0.93195 0.92592 0.91246 0.94074 0.90475 0.92491 0.94707 0.92110 0.89485 0.96800 0.97578 1.01149 0.93614 0.95640 0.89241 0.92094 0.90756 0.91238 0.84906 0.89660 0.90957 0.92417 0.87137 0.90887 0.93716 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.11 -2.83 5.93 30.59 0.18 -2.65 16 3 C -0.11 -3.56 5.19 30.60 0.16 -3.40 16 4 C 0.06 1.94 4.94 86.30 0.43 2.37 16 5 N -0.53 -21.53 4.41 -905.34 -4.00 -25.52 16 6 C 0.21 10.38 4.21 85.56 0.36 10.74 16 7 C -0.46 -25.08 6.11 25.60 0.16 -24.92 16 8 H 0.06 3.45 5.84 -2.91 -0.02 3.43 16 9 C 0.01 0.83 5.46 84.65 0.46 1.29 16 10 N -0.94 -55.99 13.29 21.45 0.28 -55.71 16 11 Si 0.92 46.04 29.54 68.60 2.03 48.07 16 12 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 14 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 15 C 0.10 3.80 4.16 85.56 0.36 4.15 16 16 C -0.07 -2.69 3.31 -19.87 -0.07 -2.75 16 17 C -0.07 -2.56 5.61 -19.87 -0.11 -2.67 16 18 C -0.09 -2.67 9.58 71.24 0.68 -1.99 16 19 C -0.15 -4.92 9.36 22.27 0.21 -4.71 16 20 C -0.10 -3.40 5.88 -19.86 -0.12 -3.52 16 21 C -0.11 -2.81 10.01 71.24 0.71 -2.09 16 22 C -0.16 -6.02 9.33 22.27 0.21 -5.82 16 23 C -0.05 -1.92 4.18 -19.87 -0.08 -2.00 16 24 C -0.11 -4.35 8.56 71.24 0.61 -3.74 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 1.38 6.24 -2.39 -0.01 1.36 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 2.39 7.85 -2.39 -0.02 2.37 16 33 H 0.01 0.48 8.12 -2.39 -0.02 0.46 16 34 H 0.01 0.35 5.85 -2.39 -0.01 0.33 16 35 H -0.03 -1.59 5.80 -2.39 -0.01 -1.60 16 36 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.03 0.98 5.85 -2.39 -0.01 0.97 16 38 H 0.09 2.73 6.21 -2.39 -0.01 2.72 16 39 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 41 H 0.07 1.83 6.19 -2.38 -0.01 1.81 16 42 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 45 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 46 H 0.11 4.01 8.06 -2.91 -0.02 3.98 16 47 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.04 1.85 8.05 -2.38 -0.02 1.83 16 49 H 0.06 2.94 3.78 -2.39 -0.01 2.93 16 Total: -1.00 -63.26 372.05 4.08 -59.18 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.90 Total: 18.39 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 4.86 Total: -44.41 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -3.71 Total: -81.23 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -63.26 4.08 -59.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203744840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.842 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds