Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47605 * 2 1 4 4 C 1.52996 * 109.47205 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47377 * 181.08425 * 4 3 2 6 6 C 1.46905 * 110.99773 * 299.42550 * 5 4 3 7 7 C 1.50695 * 109.46895 * 294.04550 * 6 5 4 8 8 H 1.08003 * 120.00642 * 355.09120 * 7 6 5 9 9 C 1.37882 * 119.99715 * 175.08670 * 7 6 5 10 10 N 1.31515 * 120.00122 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99835 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46481 * 90.00590 * 11 9 7 13 13 H 1.48498 * 109.47264 * 210.00304 * 11 9 7 14 14 H 1.48498 * 109.47236 * 330.00795 * 11 9 7 15 15 C 1.46897 * 110.99944 * 63.37557 * 5 4 3 16 16 C 1.50697 * 109.46923 * 66.04659 * 15 5 4 17 17 C 1.38239 * 119.99932 * 90.00470 * 16 15 5 18 18 C 1.38231 * 120.00207 * 179.97438 * 17 16 15 19 19 C 1.38239 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00283 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47384 * 240.00315 * 20 19 18 22 22 C 1.53002 * 109.46915 * 120.00019 * 20 19 18 23 23 C 1.38235 * 119.99726 * 0.26189 * 19 18 17 24 24 C 1.38229 * 120.00413 * 270.02145 * 16 15 5 25 25 H 1.08998 * 109.46751 * 300.00728 * 1 2 3 26 26 H 1.09001 * 109.46646 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46751 * 239.99272 * 2 1 3 29 29 H 1.09001 * 109.46646 * 120.00155 * 2 1 3 30 30 H 1.08998 * 109.47660 * 59.99828 * 3 2 1 31 31 H 1.09001 * 109.47245 * 299.99788 * 3 2 1 32 32 H 1.09003 * 109.47323 * 61.08718 * 4 3 2 33 33 H 1.08997 * 109.47329 * 301.08543 * 4 3 2 34 34 H 1.08990 * 109.47463 * 54.04931 * 6 5 4 35 35 H 1.09005 * 109.47019 * 174.04831 * 6 5 4 36 36 H 0.97003 * 120.00068 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.47219 * 306.04996 * 15 5 4 38 38 H 1.09002 * 109.47449 * 186.04713 * 15 5 4 39 39 H 1.07997 * 120.00065 * 359.97438 * 17 16 15 40 40 H 1.07995 * 120.00468 * 179.97438 * 18 17 16 41 41 H 1.09004 * 109.47155 * 0.02562 * 20 19 18 42 42 H 1.08994 * 109.47209 * 300.00111 * 21 20 19 43 43 H 1.08996 * 109.47272 * 60.00257 * 21 20 19 44 44 H 1.09005 * 109.47007 * 180.02562 * 21 20 19 45 45 H 1.09007 * 109.47003 * 60.00785 * 22 20 19 46 46 H 1.09000 * 109.47272 * 179.97438 * 22 20 19 47 47 H 1.08999 * 109.47489 * 300.00336 * 22 20 19 48 48 H 1.07998 * 119.99865 * 179.73000 * 23 19 18 49 49 H 1.08001 * 119.99993 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0599 2.8270 0.0269 6 6 3.6007 3.5702 -1.1542 7 6 4.2332 2.9875 -2.3916 8 1 4.9688 2.2016 -2.3033 9 6 3.8727 3.4575 -3.6367 10 7 2.9774 4.4148 -3.7443 11 14 4.6573 2.7356 -5.1707 12 1 3.8483 1.5843 -5.6452 13 1 4.7136 3.7722 -6.2325 14 1 6.0334 2.2765 -4.8536 15 6 3.6555 3.5051 1.2656 16 6 4.3444 2.8588 2.4399 17 6 5.5762 3.3243 2.8605 18 6 6.2078 2.7319 3.9379 19 6 5.6079 1.6736 4.5945 20 6 6.2968 1.0273 5.7687 21 6 6.5449 -0.4513 5.4640 22 6 5.4114 1.1506 7.0104 23 6 4.3789 1.2042 4.1702 24 6 3.7447 1.8003 3.0962 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6769 1.9563 0.8899 31 1 1.6769 1.9562 -0.8900 32 1 3.9338 0.9452 -0.8987 33 1 3.9331 0.9118 0.8809 34 1 2.5161 3.4960 -1.2311 35 1 3.8873 4.6176 -1.0584 36 1 2.7235 4.7452 -4.6203 37 1 2.5754 3.4239 1.3883 38 1 3.9372 4.5567 1.2129 39 1 6.0451 4.1508 2.3473 40 1 7.1703 3.0953 4.2663 41 1 7.2489 1.5259 5.9509 42 1 5.5928 -0.9495 5.2821 43 1 7.1757 -0.5390 4.5794 44 1 7.0428 -0.9188 6.3135 45 1 4.4591 0.6522 6.8285 46 1 5.9093 0.6828 7.8597 47 1 5.2346 2.2040 7.2276 48 1 3.9122 0.3746 4.6804 49 1 2.7826 1.4362 2.7672 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204165978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -4.387901 kcal Electronic energy + Delta-G solvation = -23427.584036 eV Core-core repulsion = 20353.215470 eV Total energy + Delta-G solvation = -3074.368567 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.61909 -37.55270 -35.31860 -33.84259 -32.51137 -30.71819 -30.33421 -28.26082 -27.26387 -26.87882 -24.71896 -23.40112 -22.53156 -21.77073 -21.12624 -19.89032 -19.16414 -16.35110 -16.12349 -15.43526 -15.22052 -14.98784 -14.54150 -14.49147 -13.98172 -13.74070 -13.71921 -13.53995 -13.28524 -13.04840 -12.47589 -12.42427 -12.38211 -12.13994 -11.93363 -11.71566 -11.39037 -11.24321 -11.08119 -11.01910 -10.90630 -10.74152 -10.68482 -10.63129 -10.50135 -10.47313 -10.30819 -9.87415 -9.66256 -9.17561 -8.62130 -8.42089 -8.24777 -7.09897 -6.00399 -4.00965 1.60433 1.68307 3.32693 3.39119 3.43759 3.98693 4.45667 4.65201 4.75177 5.08806 5.12379 5.17606 5.25100 5.28605 5.35386 5.35932 5.38313 5.40182 5.47907 5.55964 5.60582 5.69318 5.70541 5.82619 5.85444 5.88846 5.97362 6.09039 6.11048 6.14284 6.15286 6.16260 6.25264 6.30595 6.36577 6.39276 6.49811 6.59004 6.69450 6.81207 6.82212 6.98378 7.04690 7.28316 7.34944 7.46137 7.84166 8.12762 8.24129 8.58913 9.07296 9.63025 11.10169 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003901 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.783044 B = 7176.497165 C = 7982.032552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.158 4.158 4 C 0.065 3.935 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.084 3.916 16 C -0.061 4.061 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.089 4.089 20 C -0.054 4.054 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.003 0.997 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.114 0.886 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -7.288 18.049 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.251 5.251 6 C 0.064 3.936 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.044 4.044 16 C -0.062 4.062 17 C -0.117 4.117 18 C -0.139 4.139 19 C -0.089 4.089 20 C -0.073 4.073 21 C -0.201 4.201 22 C -0.200 4.200 23 C -0.136 4.136 24 C -0.131 4.131 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.021 0.979 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.132 0.868 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.959 -7.162 17.878 19.358 hybrid contribution -0.578 -0.245 -1.014 1.192 sum 1.381 -7.407 16.864 18.471 Atomic orbital electron populations 1.21769 0.96616 1.00725 1.01631 1.21420 0.95166 0.97593 1.01367 1.22256 0.99015 0.96216 1.02165 1.22061 0.91443 0.91387 1.01486 1.62384 1.59186 1.02076 1.01408 1.19799 0.94493 0.93290 0.86041 1.21136 1.22883 1.20089 0.89961 0.91983 1.24965 0.95293 0.95228 0.99056 1.69956 1.32157 1.27866 1.23950 0.86551 0.79833 0.78663 0.82710 1.20797 1.21327 1.19792 1.21081 0.96387 0.97908 0.89012 1.19949 0.94890 0.95643 0.95688 1.21029 0.94579 1.00125 0.95960 1.20976 0.99641 0.96671 0.96594 1.19722 0.95320 0.96684 0.97224 1.20077 0.98328 0.96034 0.92847 1.21850 1.01878 0.94961 1.01395 1.21850 0.99681 1.01844 0.96624 1.20823 0.95261 1.00085 0.97448 1.21060 1.00074 0.96167 0.95774 0.93294 0.92695 0.93437 0.92059 0.92876 0.93106 0.90490 0.90372 0.92638 0.97908 0.95826 0.93018 0.94604 0.90839 0.86068 0.86696 0.90814 0.92507 0.92451 0.92746 0.92535 0.92734 0.92626 0.86830 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.16 -2.80 4.46 -26.74 -0.12 -2.92 16 4 C 0.06 1.25 4.79 -3.82 -0.02 1.24 16 5 N -0.53 -11.26 4.69 -237.52 -1.11 -12.37 16 6 C 0.19 4.82 4.49 -4.98 -0.02 4.79 16 7 C -0.50 -13.96 8.40 -34.44 -0.29 -14.25 16 8 H 0.06 1.73 7.29 -52.48 -0.38 1.35 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.08 1.53 4.93 -4.98 -0.02 1.50 16 16 C -0.06 -0.98 4.89 -104.63 -0.51 -1.49 16 17 C -0.10 -1.48 9.70 -39.58 -0.38 -1.87 16 18 C -0.12 -1.59 9.67 -39.58 -0.38 -1.97 16 19 C -0.09 -1.10 4.78 -104.62 -0.50 -1.60 16 20 C -0.05 -0.53 3.09 -91.78 -0.28 -0.81 16 21 C -0.14 -1.30 9.00 37.15 0.33 -0.96 16 22 C -0.14 -1.21 9.01 37.16 0.33 -0.88 16 23 C -0.12 -1.51 8.71 -39.58 -0.34 -1.85 16 24 C -0.11 -1.62 7.91 -39.59 -0.31 -1.93 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.86 5.71 -51.93 -0.30 0.56 16 31 H 0.08 1.63 6.35 -51.93 -0.33 1.30 16 32 H 0.08 1.68 6.94 -51.93 -0.36 1.32 16 33 H 0.06 0.99 5.93 -51.93 -0.31 0.69 16 34 H 0.00 0.09 6.04 -51.93 -0.31 -0.23 16 35 H 0.02 0.65 7.93 -51.93 -0.41 0.24 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.04 0.64 6.03 -51.93 -0.31 0.33 16 38 H 0.07 1.34 7.88 -51.93 -0.41 0.93 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 1.28 7.95 -52.49 -0.42 0.86 16 41 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 42 H 0.06 0.51 7.37 -51.93 -0.38 0.13 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 7.41 -51.93 -0.38 0.09 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.11 1.24 7.10 -52.49 -0.37 0.87 16 49 H 0.12 1.63 7.31 -52.49 -0.38 1.25 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -29.03 378.75 -10.94 -39.97 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.84 Total: 0.90 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.41 Total: -25.08 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.38 Total: -38.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.03 -10.94 -39.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204165978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.582 kcal (2) G-P(sol) polarization free energy of solvation -29.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds