Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47605 * 2 1 4 4 C 1.52996 * 109.47205 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47377 * 181.08425 * 4 3 2 6 6 C 1.46905 * 110.99773 * 299.42550 * 5 4 3 7 7 C 1.50695 * 109.46895 * 294.04550 * 6 5 4 8 8 H 1.08003 * 120.00642 * 355.09120 * 7 6 5 9 9 C 1.37882 * 119.99715 * 175.08670 * 7 6 5 10 10 N 1.31515 * 120.00122 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99835 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46481 * 90.00590 * 11 9 7 13 13 H 1.48498 * 109.47264 * 210.00304 * 11 9 7 14 14 H 1.48498 * 109.47236 * 330.00795 * 11 9 7 15 15 C 1.46897 * 110.99944 * 63.37557 * 5 4 3 16 16 C 1.50697 * 109.46923 * 66.04659 * 15 5 4 17 17 C 1.38239 * 119.99932 * 90.00470 * 16 15 5 18 18 C 1.38231 * 120.00207 * 179.97438 * 17 16 15 19 19 C 1.38239 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00283 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47384 * 240.00315 * 20 19 18 22 22 C 1.53002 * 109.46915 * 120.00019 * 20 19 18 23 23 C 1.38235 * 119.99726 * 0.26189 * 19 18 17 24 24 C 1.38229 * 120.00413 * 270.02145 * 16 15 5 25 25 H 1.08998 * 109.46751 * 300.00728 * 1 2 3 26 26 H 1.09001 * 109.46646 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46751 * 239.99272 * 2 1 3 29 29 H 1.09001 * 109.46646 * 120.00155 * 2 1 3 30 30 H 1.08998 * 109.47660 * 59.99828 * 3 2 1 31 31 H 1.09001 * 109.47245 * 299.99788 * 3 2 1 32 32 H 1.09003 * 109.47323 * 61.08718 * 4 3 2 33 33 H 1.08997 * 109.47329 * 301.08543 * 4 3 2 34 34 H 1.08990 * 109.47463 * 54.04931 * 6 5 4 35 35 H 1.09005 * 109.47019 * 174.04831 * 6 5 4 36 36 H 0.97003 * 120.00068 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.47219 * 306.04996 * 15 5 4 38 38 H 1.09002 * 109.47449 * 186.04713 * 15 5 4 39 39 H 1.07997 * 120.00065 * 359.97438 * 17 16 15 40 40 H 1.07995 * 120.00468 * 179.97438 * 18 17 16 41 41 H 1.09004 * 109.47155 * 0.02562 * 20 19 18 42 42 H 1.08994 * 109.47209 * 300.00111 * 21 20 19 43 43 H 1.08996 * 109.47272 * 60.00257 * 21 20 19 44 44 H 1.09005 * 109.47007 * 180.02562 * 21 20 19 45 45 H 1.09007 * 109.47003 * 60.00785 * 22 20 19 46 46 H 1.09000 * 109.47272 * 179.97438 * 22 20 19 47 47 H 1.08999 * 109.47489 * 300.00336 * 22 20 19 48 48 H 1.07998 * 119.99865 * 179.73000 * 23 19 18 49 49 H 1.08001 * 119.99993 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0599 2.8270 0.0269 6 6 3.6007 3.5702 -1.1542 7 6 4.2332 2.9875 -2.3916 8 1 4.9688 2.2016 -2.3033 9 6 3.8727 3.4575 -3.6367 10 7 2.9774 4.4148 -3.7443 11 14 4.6573 2.7356 -5.1707 12 1 3.8483 1.5843 -5.6452 13 1 4.7136 3.7722 -6.2325 14 1 6.0334 2.2765 -4.8536 15 6 3.6555 3.5051 1.2656 16 6 4.3444 2.8588 2.4399 17 6 5.5762 3.3243 2.8605 18 6 6.2078 2.7319 3.9379 19 6 5.6079 1.6736 4.5945 20 6 6.2968 1.0273 5.7687 21 6 6.5449 -0.4513 5.4640 22 6 5.4114 1.1506 7.0104 23 6 4.3789 1.2042 4.1702 24 6 3.7447 1.8003 3.0962 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6769 1.9563 0.8899 31 1 1.6769 1.9562 -0.8900 32 1 3.9338 0.9452 -0.8987 33 1 3.9331 0.9118 0.8809 34 1 2.5161 3.4960 -1.2311 35 1 3.8873 4.6176 -1.0584 36 1 2.7235 4.7452 -4.6203 37 1 2.5754 3.4239 1.3883 38 1 3.9372 4.5567 1.2129 39 1 6.0451 4.1508 2.3473 40 1 7.1703 3.0953 4.2663 41 1 7.2489 1.5259 5.9509 42 1 5.5928 -0.9495 5.2821 43 1 7.1757 -0.5390 4.5794 44 1 7.0428 -0.9188 6.3135 45 1 4.4591 0.6522 6.8285 46 1 5.9093 0.6828 7.8597 47 1 5.2346 2.2040 7.2276 48 1 3.9122 0.3746 4.6804 49 1 2.7826 1.4362 2.7672 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204165978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -18.167389 kcal Electronic energy + Delta-G solvation = -23428.181560 eV Core-core repulsion = 20353.215470 eV Total energy + Delta-G solvation = -3074.966090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76463 -39.02084 -36.30411 -35.34791 -34.44698 -31.83575 -31.56722 -29.84764 -28.54778 -27.91513 -26.16917 -25.07533 -23.73508 -22.98077 -22.43325 -21.04691 -20.57641 -18.38710 -17.30143 -16.85376 -16.58156 -16.55652 -15.92876 -15.81038 -15.49448 -15.00011 -14.69807 -14.39518 -14.34599 -14.21383 -14.16099 -13.80079 -13.55732 -13.27057 -13.05606 -13.01254 -12.91917 -12.65499 -12.54442 -12.39258 -12.25738 -12.10137 -12.00415 -11.92998 -11.89912 -11.74199 -11.43277 -11.42025 -11.26338 -11.17966 -10.59370 -9.71076 -9.38857 -8.84185 -8.18585 -6.27813 0.49734 0.59767 1.39257 1.40320 1.51947 2.40066 2.86525 3.13674 3.55171 3.80500 3.88030 4.01059 4.03987 4.08576 4.18729 4.23334 4.33625 4.39463 4.46249 4.49561 4.58984 4.60824 4.70881 4.77861 4.83097 4.86961 4.87613 4.91394 4.98635 5.03214 5.05313 5.11871 5.14818 5.22397 5.24332 5.27345 5.28041 5.38158 5.40705 5.45313 5.46673 5.53310 5.62889 5.68845 5.82034 5.85399 6.08617 6.20497 6.38852 6.67081 6.88683 7.41296 8.91691 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003901 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.783044 B = 7176.497165 C = 7982.032552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.071 3.929 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.963 3.037 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.090 3.910 16 C -0.082 4.082 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.083 4.083 20 C -0.054 4.054 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.116 4.116 24 C -0.117 4.117 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.077 0.923 34 H -0.019 1.019 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.138 0.862 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -9.568 19.989 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.185 4.185 4 C -0.057 4.057 5 N -0.260 5.260 6 C 0.080 3.920 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.788 3.212 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.038 4.038 16 C -0.082 4.082 17 C -0.132 4.132 18 C -0.142 4.142 19 C -0.083 4.083 20 C -0.072 4.072 21 C -0.200 4.200 22 C -0.198 4.198 23 C -0.134 4.134 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.095 0.905 34 H -0.001 1.001 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.155 0.845 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.612 -9.452 19.838 22.129 hybrid contribution -0.747 0.474 -1.498 1.740 sum 1.866 -8.978 18.340 20.505 Atomic orbital electron populations 1.21742 0.95223 1.02140 1.01337 1.21399 0.96387 0.95241 1.02094 1.22096 0.97696 0.98161 1.00507 1.22001 0.92543 0.90045 1.01102 1.62265 1.59596 1.02847 1.01250 1.19414 0.92892 0.92104 0.87621 1.21393 1.22871 1.20009 0.91176 0.92488 1.25830 0.95709 0.95493 1.02334 1.70081 1.33400 1.29092 1.24845 0.85477 0.79074 0.78080 0.78582 1.19848 1.20730 1.19122 1.21014 0.96733 0.97398 0.88625 1.19747 0.95716 0.97143 0.95641 1.21099 0.94609 1.00500 0.96990 1.21220 1.00370 0.96749 0.95851 1.20105 0.95021 0.95796 0.97422 1.20148 0.98654 0.96316 0.92109 1.21846 1.01954 0.94447 1.01731 1.21836 0.99651 1.01795 0.96509 1.21083 0.95298 1.00299 0.96695 1.21132 1.00346 0.95755 0.96305 0.92329 0.94314 0.91134 0.92874 0.90529 0.92171 0.94628 0.92874 0.90508 1.00125 0.98747 0.92805 0.94540 0.91979 0.86788 0.84717 0.90029 0.92391 0.93488 0.90975 0.92399 0.91052 0.93097 0.84459 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.11 -3.26 5.93 30.59 0.18 -3.08 16 3 C -0.15 -5.28 4.46 30.59 0.14 -5.14 16 4 C 0.07 2.81 4.79 86.30 0.41 3.23 16 5 N -0.54 -23.90 4.69 -905.37 -4.25 -28.15 16 6 C 0.21 11.14 4.49 85.55 0.38 11.52 16 7 C -0.52 -29.80 8.40 25.60 0.22 -29.59 16 8 H 0.06 3.28 7.29 -2.91 -0.02 3.26 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 11 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 C 0.09 3.40 4.93 85.56 0.42 3.82 16 16 C -0.08 -2.62 4.89 -19.87 -0.10 -2.72 16 17 C -0.11 -3.41 9.70 22.27 0.22 -3.19 16 18 C -0.12 -3.07 9.67 22.27 0.22 -2.85 16 19 C -0.08 -1.83 4.78 -19.87 -0.09 -1.93 16 20 C -0.05 -0.87 3.09 -11.54 -0.04 -0.90 16 21 C -0.14 -2.11 9.00 71.98 0.65 -1.46 16 22 C -0.14 -1.91 9.01 71.98 0.65 -1.27 16 23 C -0.12 -2.66 8.71 22.27 0.19 -2.46 16 24 C -0.12 -3.21 7.91 22.27 0.18 -3.03 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.04 5.71 -2.39 -0.01 2.03 16 31 H 0.03 1.58 6.35 -2.39 -0.02 1.56 16 32 H 0.05 2.35 6.94 -2.39 -0.02 2.33 16 33 H 0.08 2.71 5.93 -2.39 -0.01 2.69 16 34 H -0.02 -1.09 6.04 -2.39 -0.01 -1.11 16 35 H -0.01 -0.33 7.93 -2.38 -0.02 -0.35 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.04 1.36 6.03 -2.38 -0.01 1.34 16 38 H 0.06 2.43 7.88 -2.39 -0.02 2.41 16 39 H 0.11 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.13 2.73 7.95 -2.91 -0.02 2.70 16 41 H 0.08 1.21 7.88 -2.38 -0.02 1.20 16 42 H 0.06 0.84 7.37 -2.39 -0.02 0.83 16 43 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.06 0.78 7.41 -2.38 -0.02 0.76 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.14 2.49 7.10 -2.91 -0.02 2.47 16 49 H 0.12 3.16 7.31 -2.91 -0.02 3.14 16 Total: -1.00 -64.49 378.75 3.75 -60.75 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.89 Total: 18.10 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.80 Total: -41.34 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -3.97 Total: -84.68 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.49 3.75 -60.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204165978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.581 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds