Wall clock time and date at job start Tue Mar 31 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47262 * 2 1 4 4 N 1.46904 * 109.47362 * 181.07234 * 3 2 1 5 5 C 1.46901 * 110.99890 * 299.43320 * 4 3 2 6 6 C 1.50703 * 109.47014 * 294.03667 * 5 4 3 7 7 H 1.08003 * 119.99966 * 355.07438 * 6 5 4 8 8 C 1.37882 * 119.99962 * 175.07819 * 6 5 4 9 9 N 1.31507 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99773 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47412 * 59.99993 * 10 8 6 12 12 H 1.48502 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47456 * 299.99810 * 10 8 6 14 14 C 1.46898 * 110.99596 * 63.37965 * 4 3 2 15 15 C 1.50707 * 109.47075 * 66.05359 * 14 4 3 16 16 C 1.38233 * 119.99753 * 269.72561 * 15 14 4 17 17 C 1.38237 * 120.00239 * 179.76334 * 16 15 14 18 18 C 1.38236 * 119.99447 * 0.50375 * 17 16 15 19 19 C 1.50695 * 119.99810 * 179.72433 * 18 17 16 20 20 C 1.53009 * 109.47188 * 240.02335 * 19 18 17 21 21 C 1.53001 * 109.47290 * 0.02562 * 19 18 17 22 22 C 1.53004 * 109.47153 * 120.02653 * 19 18 17 23 23 C 1.38236 * 120.00366 * 359.74841 * 18 17 16 24 24 C 1.38236 * 120.00070 * 89.99273 * 15 14 4 25 25 H 1.09002 * 109.47260 * 60.00047 * 1 2 3 26 26 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47482 * 300.00378 * 1 2 3 28 28 H 1.09004 * 109.47203 * 240.00042 * 2 1 3 29 29 H 1.09003 * 109.46783 * 120.00183 * 2 1 3 30 30 H 1.09007 * 109.47339 * 61.07236 * 3 2 1 31 31 H 1.09001 * 109.47507 * 301.07048 * 3 2 1 32 32 H 1.09003 * 109.47482 * 54.03167 * 5 4 3 33 33 H 1.08996 * 109.47383 * 174.03775 * 5 4 3 34 34 H 0.97005 * 120.00030 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47818 * 306.05223 * 14 4 3 36 36 H 1.09003 * 109.46874 * 186.04272 * 14 4 3 37 37 H 1.08003 * 119.99740 * 359.97438 * 16 15 14 38 38 H 1.07993 * 120.00307 * 180.23209 * 17 16 15 39 39 H 1.09000 * 109.46740 * 60.00294 * 20 19 18 40 40 H 1.08999 * 109.46927 * 180.02562 * 20 19 18 41 41 H 1.08995 * 109.46858 * 299.99854 * 20 19 18 42 42 H 1.09004 * 109.46763 * 60.00068 * 21 19 18 43 43 H 1.08998 * 109.47172 * 180.02562 * 21 19 18 44 44 H 1.08995 * 109.47225 * 300.00032 * 21 19 18 45 45 H 1.08995 * 109.47128 * 59.99907 * 22 19 18 46 46 H 1.09005 * 109.46786 * 180.02562 * 22 19 18 47 47 H 1.08993 * 109.46708 * 299.99478 * 22 19 18 48 48 H 1.08001 * 120.00185 * 179.97438 * 23 18 17 49 49 H 1.08001 * 119.99979 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5088 1.4425 -0.0259 5 6 4.0562 0.7612 1.1548 6 6 3.7176 1.5513 2.3927 7 1 3.2223 2.5070 2.3046 8 6 4.0402 1.0541 3.6376 9 7 4.6429 -0.1098 3.7448 10 14 3.6212 2.0338 5.1718 11 1 2.1527 2.2442 5.2391 12 1 4.0692 1.2862 6.3742 13 1 4.3080 3.3494 5.1220 14 6 4.0134 0.8357 -1.2649 15 6 3.6341 1.7013 -2.4389 16 6 2.4391 1.4852 -3.0993 17 6 2.0889 2.2823 -4.1731 18 6 2.9385 3.2886 -4.5929 19 6 2.5597 4.1535 -5.7674 20 6 3.6147 4.0119 -6.8664 21 6 1.1980 3.7120 -6.3076 22 6 2.4817 5.6147 -5.3205 23 6 4.1360 3.5013 -3.9358 24 6 4.4838 2.7076 -2.8587 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6924 1.9508 0.8995 31 1 1.6611 1.9619 -0.8802 32 1 3.6243 -0.2367 1.2314 33 1 5.1391 0.6821 1.0592 34 1 4.8696 -0.4598 4.6206 35 1 3.5768 -0.1553 -1.3882 36 1 5.0988 0.7507 -1.2119 37 1 1.7775 0.6959 -2.7742 38 1 1.1536 2.1159 -4.6867 39 1 3.6703 2.9709 -7.1848 40 1 3.3409 4.6379 -7.7157 41 1 4.5847 4.3265 -6.4815 42 1 0.4464 3.8129 -5.5246 43 1 0.9242 4.3373 -7.1574 44 1 1.2535 2.6711 -6.6260 45 1 3.4517 5.9293 -4.9357 46 1 2.2071 6.2402 -6.1700 47 1 1.7300 5.7156 -4.5377 48 1 4.8000 4.2873 -4.2641 49 1 5.4196 2.8733 -2.3457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204397784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:57 Heat of formation + Delta-G solvation = 2.583955 kcal Electronic energy + Delta-G solvation = -23540.989416 eV Core-core repulsion = 20466.923172 eV Total energy + Delta-G solvation = -3074.066244 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86462 -37.76040 -35.92864 -32.78828 -32.17806 -30.87143 -30.26366 -27.47288 -27.36576 -26.99459 -26.00611 -23.89945 -22.10216 -22.04774 -21.61191 -19.30390 -19.00493 -16.44889 -16.08850 -15.43339 -15.04216 -14.91695 -14.44847 -14.34166 -14.19724 -13.91167 -13.61818 -13.53886 -13.18548 -13.04047 -12.68386 -12.36216 -12.12736 -11.94544 -11.80636 -11.67055 -11.57703 -11.39568 -11.15238 -11.07884 -10.97585 -10.93091 -10.75972 -10.71884 -10.53832 -10.40787 -10.30702 -9.88623 -9.66876 -9.19167 -8.60474 -8.41513 -8.23856 -7.09633 -6.00099 -4.00812 1.61785 1.69727 3.34864 3.38745 3.42056 3.99318 4.45793 4.55264 4.67605 4.88967 5.13271 5.20138 5.23523 5.25673 5.32692 5.36308 5.42157 5.47925 5.55050 5.58300 5.62288 5.69677 5.71293 5.73694 5.79761 5.88439 5.92139 5.95145 5.97243 6.11724 6.16134 6.17263 6.18753 6.30979 6.35716 6.41568 6.46926 6.54631 6.72460 6.79074 6.82870 6.98523 7.05282 7.29398 7.35217 7.46107 7.84158 8.13110 8.24485 8.59254 9.07163 9.63100 11.10478 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.003551 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.486368 B = 7883.693818 C = 8267.935887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.084 3.916 15 C -0.061 4.061 16 C -0.113 4.113 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.028 4.028 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.099 4.099 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.003 0.997 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.115 0.885 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 5.507 -19.511 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.063 4.063 4 N -0.251 5.251 5 C 0.064 3.936 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.044 4.044 15 C -0.062 4.062 16 C -0.131 4.131 17 C -0.142 4.142 18 C -0.083 4.083 19 C -0.028 4.028 20 C -0.194 4.194 21 C -0.200 4.200 22 C -0.195 4.195 23 C -0.136 4.136 24 C -0.117 4.117 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.021 0.979 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.133 0.867 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.083 5.871 -19.338 20.839 hybrid contribution -0.427 -0.458 1.019 1.196 sum -5.510 5.414 -18.319 19.881 Atomic orbital electron populations 1.21651 0.96564 1.00611 1.01194 1.22178 0.95458 1.00535 1.02094 1.22070 0.88432 0.94331 1.01493 1.62381 1.06599 1.54697 1.01415 1.19797 0.94809 0.92965 0.86046 1.21105 1.38129 1.04967 0.89984 0.92029 1.24964 0.95452 0.95067 0.99062 1.69945 1.41639 1.18283 1.24088 0.86597 0.78738 0.80079 0.82217 1.20319 1.21427 1.20203 1.21082 1.00147 0.94133 0.89027 1.19950 0.94125 0.96444 0.95669 1.21074 0.96454 0.99822 0.95799 1.21042 0.99544 0.96111 0.97550 1.19663 0.94954 0.96775 0.96919 1.19455 0.95622 0.94613 0.93080 1.21879 0.98323 1.01745 0.97471 1.21949 0.96128 1.01216 1.00688 1.21884 1.02249 0.94353 1.01026 1.20878 0.96519 0.99747 0.96454 1.21020 0.99888 0.94825 0.95982 0.93580 0.93655 0.92747 0.93139 0.90531 0.90367 0.92627 0.97922 0.95815 0.92950 0.94625 0.90846 0.86544 0.86290 0.92598 0.92685 0.92451 0.92257 0.92699 0.92370 0.92407 0.92705 0.92441 0.86743 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.16 -2.95 5.20 -26.74 -0.14 -3.09 16 3 C 0.07 1.28 4.81 -3.82 -0.02 1.26 16 4 N -0.53 -11.34 4.69 -237.51 -1.11 -12.46 16 5 C 0.19 4.85 4.49 -4.97 -0.02 4.82 16 6 C -0.50 -14.06 8.40 -34.44 -0.29 -14.35 16 7 H 0.06 1.72 7.29 -52.48 -0.38 1.34 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.08 1.54 4.93 -4.97 -0.02 1.51 16 15 C -0.06 -0.99 4.88 -104.62 -0.51 -1.50 16 16 C -0.11 -1.64 7.92 -39.58 -0.31 -1.95 16 17 C -0.12 -1.60 8.98 -39.58 -0.36 -1.95 16 18 C -0.08 -1.02 4.76 -104.63 -0.50 -1.51 16 19 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 20 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 21 C -0.14 -1.23 7.13 37.16 0.27 -0.96 16 22 C -0.14 -1.27 8.29 37.16 0.31 -0.97 16 23 C -0.12 -1.54 8.71 -39.58 -0.34 -1.89 16 24 C -0.10 -1.49 9.70 -39.58 -0.38 -1.87 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.86 5.72 -51.93 -0.30 0.56 16 29 H 0.08 1.63 6.35 -51.93 -0.33 1.30 16 30 H 0.08 1.70 6.94 -51.92 -0.36 1.34 16 31 H 0.06 1.01 5.95 -51.93 -0.31 0.70 16 32 H 0.00 0.08 6.04 -51.93 -0.31 -0.23 16 33 H 0.02 0.65 7.93 -51.93 -0.41 0.24 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.04 0.64 6.03 -51.93 -0.31 0.33 16 36 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 37 H 0.12 1.63 7.35 -52.48 -0.39 1.25 16 38 H 0.12 1.30 5.90 -52.49 -0.31 0.99 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.50 7.39 -51.93 -0.38 0.11 16 42 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 45 H 0.06 0.54 7.39 -51.93 -0.38 0.15 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.11 1.29 7.10 -52.49 -0.37 0.92 16 49 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -29.18 373.33 -10.34 -39.51 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.68 Total: 0.52 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -1.88 Total: -24.03 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.38 Total: -38.35 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.18 -10.34 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204397784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.095 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds