Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47262 * 2 1 4 4 N 1.46904 * 109.47362 * 181.07234 * 3 2 1 5 5 C 1.46901 * 110.99890 * 299.43320 * 4 3 2 6 6 C 1.50703 * 109.47014 * 294.03667 * 5 4 3 7 7 H 1.08003 * 119.99966 * 355.07438 * 6 5 4 8 8 C 1.37882 * 119.99962 * 175.07819 * 6 5 4 9 9 N 1.31507 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99773 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47412 * 59.99993 * 10 8 6 12 12 H 1.48502 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47456 * 299.99810 * 10 8 6 14 14 C 1.46898 * 110.99596 * 63.37965 * 4 3 2 15 15 C 1.50707 * 109.47075 * 66.05359 * 14 4 3 16 16 C 1.38233 * 119.99753 * 269.72561 * 15 14 4 17 17 C 1.38237 * 120.00239 * 179.76334 * 16 15 14 18 18 C 1.38236 * 119.99447 * 0.50375 * 17 16 15 19 19 C 1.50695 * 119.99810 * 179.72433 * 18 17 16 20 20 C 1.53009 * 109.47188 * 240.02335 * 19 18 17 21 21 C 1.53001 * 109.47290 * 0.02562 * 19 18 17 22 22 C 1.53004 * 109.47153 * 120.02653 * 19 18 17 23 23 C 1.38236 * 120.00366 * 359.74841 * 18 17 16 24 24 C 1.38236 * 120.00070 * 89.99273 * 15 14 4 25 25 H 1.09002 * 109.47260 * 60.00047 * 1 2 3 26 26 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47482 * 300.00378 * 1 2 3 28 28 H 1.09004 * 109.47203 * 240.00042 * 2 1 3 29 29 H 1.09003 * 109.46783 * 120.00183 * 2 1 3 30 30 H 1.09007 * 109.47339 * 61.07236 * 3 2 1 31 31 H 1.09001 * 109.47507 * 301.07048 * 3 2 1 32 32 H 1.09003 * 109.47482 * 54.03167 * 5 4 3 33 33 H 1.08996 * 109.47383 * 174.03775 * 5 4 3 34 34 H 0.97005 * 120.00030 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47818 * 306.05223 * 14 4 3 36 36 H 1.09003 * 109.46874 * 186.04272 * 14 4 3 37 37 H 1.08003 * 119.99740 * 359.97438 * 16 15 14 38 38 H 1.07993 * 120.00307 * 180.23209 * 17 16 15 39 39 H 1.09000 * 109.46740 * 60.00294 * 20 19 18 40 40 H 1.08999 * 109.46927 * 180.02562 * 20 19 18 41 41 H 1.08995 * 109.46858 * 299.99854 * 20 19 18 42 42 H 1.09004 * 109.46763 * 60.00068 * 21 19 18 43 43 H 1.08998 * 109.47172 * 180.02562 * 21 19 18 44 44 H 1.08995 * 109.47225 * 300.00032 * 21 19 18 45 45 H 1.08995 * 109.47128 * 59.99907 * 22 19 18 46 46 H 1.09005 * 109.46786 * 180.02562 * 22 19 18 47 47 H 1.08993 * 109.46708 * 299.99478 * 22 19 18 48 48 H 1.08001 * 120.00185 * 179.97438 * 23 18 17 49 49 H 1.08001 * 119.99979 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5088 1.4425 -0.0259 5 6 4.0562 0.7612 1.1548 6 6 3.7176 1.5513 2.3927 7 1 3.2223 2.5070 2.3046 8 6 4.0402 1.0541 3.6376 9 7 4.6429 -0.1098 3.7448 10 14 3.6212 2.0338 5.1718 11 1 2.1527 2.2442 5.2391 12 1 4.0692 1.2862 6.3742 13 1 4.3080 3.3494 5.1220 14 6 4.0134 0.8357 -1.2649 15 6 3.6341 1.7013 -2.4389 16 6 2.4391 1.4852 -3.0993 17 6 2.0889 2.2823 -4.1731 18 6 2.9385 3.2886 -4.5929 19 6 2.5597 4.1535 -5.7674 20 6 3.6147 4.0119 -6.8664 21 6 1.1980 3.7120 -6.3076 22 6 2.4817 5.6147 -5.3205 23 6 4.1360 3.5013 -3.9358 24 6 4.4838 2.7076 -2.8587 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6924 1.9508 0.8995 31 1 1.6611 1.9619 -0.8802 32 1 3.6243 -0.2367 1.2314 33 1 5.1391 0.6821 1.0592 34 1 4.8696 -0.4598 4.6206 35 1 3.5768 -0.1553 -1.3882 36 1 5.0988 0.7507 -1.2119 37 1 1.7775 0.6959 -2.7742 38 1 1.1536 2.1159 -4.6867 39 1 3.6703 2.9709 -7.1848 40 1 3.3409 4.6379 -7.7157 41 1 4.5847 4.3265 -6.4815 42 1 0.4464 3.8129 -5.5246 43 1 0.9242 4.3373 -7.1574 44 1 1.2535 2.6711 -6.6260 45 1 3.4517 5.9293 -4.9357 46 1 2.2071 6.2402 -6.1700 47 1 1.7300 5.7156 -4.5377 48 1 4.8000 4.2873 -4.2641 49 1 5.4196 2.8733 -2.3457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204397784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -11.658487 kcal Electronic energy + Delta-G solvation = -23541.607015 eV Core-core repulsion = 20466.923172 eV Total energy + Delta-G solvation = -3074.683843 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94105 -39.18777 -37.02217 -34.83880 -33.65418 -31.93318 -31.64699 -28.87961 -28.18740 -28.04335 -27.40775 -25.59500 -23.74642 -23.14187 -22.84320 -20.83218 -19.99550 -18.38397 -17.31392 -16.92878 -16.59558 -16.40358 -15.82730 -15.56899 -15.20206 -15.09086 -15.03369 -14.52818 -14.36917 -14.20190 -14.17903 -13.55810 -13.29608 -13.08316 -12.99459 -12.81811 -12.75409 -12.65717 -12.57458 -12.48129 -12.43824 -12.26394 -12.23318 -12.09712 -11.82295 -11.75208 -11.43917 -11.36661 -11.25008 -11.18400 -10.59039 -9.70177 -9.38734 -8.84634 -8.18558 -6.28043 0.50423 0.60405 1.39630 1.42487 1.50340 2.40239 2.86794 3.13586 3.55653 3.72471 3.86368 4.00824 4.08887 4.14173 4.18641 4.22072 4.22810 4.45389 4.49388 4.50285 4.57109 4.68253 4.75116 4.76364 4.83922 4.85839 4.91878 4.95693 5.04805 5.06345 5.08696 5.10429 5.11372 5.17555 5.23036 5.27263 5.30060 5.33699 5.42648 5.43648 5.49818 5.50869 5.66206 5.69010 5.81677 5.85898 6.08430 6.20763 6.38594 6.66892 6.88232 7.41065 8.91582 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.003551 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.486368 B = 7883.693818 C = 8267.935887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C 0.072 3.928 4 N -0.537 5.537 5 C 0.205 3.795 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.090 3.910 15 C -0.082 4.082 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.077 4.077 19 C -0.028 4.028 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.113 4.113 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.077 0.923 32 H -0.019 1.019 33 H -0.005 1.005 34 H 0.264 0.736 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.132 0.868 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 7.017 -21.406 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C -0.056 4.056 4 N -0.260 5.260 5 C 0.079 3.921 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.038 4.038 15 C -0.082 4.082 16 C -0.136 4.136 17 C -0.141 4.141 18 C -0.077 4.077 19 C -0.028 4.028 20 C -0.193 4.193 21 C -0.200 4.200 22 C -0.195 4.195 23 C -0.136 4.136 24 C -0.132 4.132 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.095 0.905 32 H -0.001 1.001 33 H 0.013 0.987 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.150 0.850 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.831 7.389 -21.254 23.516 hybrid contribution 0.136 -0.902 1.486 1.744 sum -6.696 6.487 -19.769 21.856 Atomic orbital electron populations 1.21606 0.93766 1.01930 1.02068 1.22043 0.97868 0.98890 1.00577 1.22011 0.87171 0.95349 1.01119 1.62261 1.07950 1.54518 1.01269 1.19418 0.92940 0.92075 0.87629 1.21374 1.38108 1.04969 0.91195 0.92460 1.25838 0.95132 0.96047 1.02369 1.70072 1.42559 1.19848 1.24961 0.85517 0.78897 0.78626 0.78084 1.19309 1.20795 1.19495 1.21018 0.99396 0.94743 0.88624 1.19747 0.95634 0.97240 0.95618 1.21153 0.95821 1.00336 0.96315 1.21320 1.00435 0.95536 0.96836 1.20053 0.94119 0.96423 0.97144 1.19535 0.96706 0.94296 0.92265 1.21873 0.97877 1.01936 0.97613 1.21954 0.95150 1.01703 1.01172 1.21887 1.01847 0.94263 1.01493 1.21074 0.97255 0.99629 0.95673 1.21087 0.99780 0.95338 0.97008 0.91178 0.92159 0.93354 0.92080 0.94560 0.92846 0.90506 1.00125 0.98721 0.92773 0.94533 0.91966 0.86078 0.83963 0.92946 0.90980 0.92639 0.92464 0.91139 0.92152 0.92716 0.90898 0.93361 0.84986 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.15 -5.66 5.20 30.59 0.16 -5.50 16 3 C 0.07 2.85 4.81 86.30 0.41 3.26 16 4 N -0.54 -24.01 4.69 -905.34 -4.25 -28.26 16 5 C 0.21 11.15 4.49 85.56 0.38 11.54 16 6 C -0.52 -29.97 8.40 25.60 0.22 -29.76 16 7 H 0.06 3.29 7.29 -2.91 -0.02 3.27 16 8 C 0.00 0.23 5.46 84.66 0.46 0.70 16 9 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 10 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 14 C 0.09 3.41 4.93 85.56 0.42 3.83 16 15 C -0.08 -2.63 4.88 -19.86 -0.10 -2.73 16 16 C -0.12 -3.26 7.92 22.27 0.18 -3.08 16 17 C -0.12 -2.88 8.98 22.27 0.20 -2.68 16 18 C -0.08 -1.72 4.76 -19.87 -0.09 -1.81 16 19 C -0.03 -0.46 0.85 -52.92 -0.05 -0.50 16 20 C -0.14 -1.94 8.29 71.99 0.60 -1.35 16 21 C -0.14 -1.95 7.13 71.98 0.51 -1.44 16 22 C -0.14 -2.15 8.29 71.98 0.60 -1.56 16 23 C -0.12 -2.94 8.71 22.27 0.19 -2.74 16 24 C -0.11 -3.42 9.70 22.27 0.22 -3.21 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 2.08 5.72 -2.38 -0.01 2.06 16 29 H 0.04 1.61 6.35 -2.39 -0.02 1.60 16 30 H 0.05 2.37 6.94 -2.38 -0.02 2.36 16 31 H 0.08 2.73 5.95 -2.39 -0.01 2.72 16 32 H -0.02 -1.09 6.04 -2.39 -0.01 -1.11 16 33 H -0.01 -0.31 7.93 -2.39 -0.02 -0.33 16 34 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 35 H 0.04 1.36 6.03 -2.39 -0.01 1.35 16 36 H 0.06 2.44 7.88 -2.39 -0.02 2.42 16 37 H 0.12 3.18 7.35 -2.91 -0.02 3.16 16 38 H 0.14 2.63 5.90 -2.91 -0.02 2.61 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.81 7.39 -2.39 -0.02 0.80 16 42 H 0.06 0.81 7.51 -2.39 -0.02 0.80 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.81 7.51 -2.39 -0.02 0.79 16 45 H 0.05 0.88 7.39 -2.39 -0.02 0.87 16 46 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.13 2.75 7.10 -2.91 -0.02 2.73 16 49 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -64.52 373.33 3.98 -60.54 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.89 Total: 17.41 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 5.03 Total: -40.22 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -3.97 Total: -84.88 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.52 3.98 -60.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204397784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.881 kcal (2) G-P(sol) polarization free energy of solvation -64.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds