Wall clock time and date at job start Tue Mar 31 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53010 * 109.46825 * 2 1 4 4 C 1.52997 * 109.46970 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47150 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99873 * 269.92685 * 5 4 3 7 7 H 1.07994 * 119.99817 * 321.75333 * 6 5 4 8 8 C 1.38810 * 119.99858 * 141.76395 * 6 5 4 9 9 N 1.31618 * 119.99903 * 157.16739 * 8 6 5 10 10 Si 1.86796 * 120.00219 * 337.16302 * 8 6 5 11 11 H 1.48504 * 109.47003 * 95.70242 * 10 8 6 12 12 H 1.48499 * 109.47571 * 215.70422 * 10 8 6 13 13 H 1.48501 * 109.47043 * 335.70441 * 10 8 6 14 14 C 1.46502 * 119.99984 * 89.64577 * 5 4 3 15 15 C 1.50698 * 109.46953 * 90.00180 * 14 5 4 16 16 C 1.38233 * 120.00107 * 269.72863 * 15 14 5 17 17 C 1.38238 * 120.00259 * 179.76779 * 16 15 14 18 18 C 1.38241 * 119.99638 * 0.50329 * 17 16 15 19 19 C 1.50692 * 119.99942 * 179.72719 * 18 17 16 20 20 C 1.53006 * 109.46998 * 240.02398 * 19 18 17 21 21 C 1.53003 * 109.47514 * 0.02562 * 19 18 17 22 22 C 1.52996 * 109.47239 * 120.02175 * 19 18 17 23 23 C 1.38231 * 119.99862 * 359.75016 * 18 17 16 24 24 C 1.38232 * 120.00055 * 89.99916 * 15 14 5 25 25 H 1.09000 * 109.47332 * 300.00291 * 1 2 3 26 26 H 1.09004 * 109.46610 * 60.00421 * 1 2 3 27 27 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47136 * 240.00458 * 2 1 3 29 29 H 1.08998 * 109.46958 * 119.99272 * 2 1 3 30 30 H 1.09000 * 109.46878 * 59.99770 * 3 2 1 31 31 H 1.09005 * 109.46669 * 299.99789 * 3 2 1 32 32 H 1.09000 * 109.47343 * 59.99613 * 4 3 2 33 33 H 1.09005 * 109.46965 * 300.00139 * 4 3 2 34 34 H 0.97002 * 120.00109 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47190 * 209.99993 * 14 5 4 36 36 H 1.09000 * 109.46939 * 330.00194 * 14 5 4 37 37 H 1.08001 * 120.00301 * 359.97438 * 16 15 14 38 38 H 1.08002 * 120.00445 * 180.22656 * 17 16 15 39 39 H 1.08995 * 109.47285 * 59.99952 * 20 19 18 40 40 H 1.09003 * 109.47017 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47072 * 299.99399 * 20 19 18 42 42 H 1.09005 * 109.46381 * 60.00021 * 21 19 18 43 43 H 1.08992 * 109.47510 * 179.97438 * 21 19 18 44 44 H 1.09003 * 109.47312 * 300.01002 * 21 19 18 45 45 H 1.08997 * 109.47397 * 60.00254 * 22 19 18 46 46 H 1.09003 * 109.47051 * 180.02562 * 22 19 18 47 47 H 1.08996 * 109.47080 * 299.99693 * 22 19 18 48 48 H 1.08004 * 120.00054 * 179.97438 * 23 18 17 49 49 H 1.08001 * 119.99835 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.2874 3.4685 -1.1875 7 1 4.7119 2.9297 -2.0216 8 6 3.9743 4.8146 -1.3176 9 7 4.5721 5.5434 -2.2362 10 14 2.7044 5.5915 -0.1893 11 1 3.3913 6.2415 0.9557 12 1 1.9285 6.6087 -0.9433 13 1 1.7839 4.5419 0.3168 14 6 4.2956 3.5175 1.2672 15 6 5.7165 3.2818 1.7104 16 6 6.0185 2.2008 2.5172 17 6 7.3227 1.9818 2.9199 18 6 8.3232 2.8498 2.5241 19 6 9.7439 2.6146 2.9681 20 6 10.2323 3.8196 3.7746 21 6 9.8046 1.3588 3.8400 22 6 10.6374 2.4266 1.7404 23 6 8.0203 3.9337 1.7216 24 6 6.7170 4.1497 1.3147 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8901 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 4.3530 6.4840 -2.3274 35 1 4.1293 4.5864 1.1334 36 1 3.6107 3.1351 2.0240 37 1 5.2362 1.5253 2.8304 38 1 7.5593 1.1351 3.5473 39 1 9.5958 3.9535 4.6492 40 1 11.2598 3.6493 4.0962 41 1 10.1892 4.7142 3.1534 42 1 9.4567 0.5004 3.2653 43 1 10.8323 1.1884 4.1608 44 1 9.1680 1.4926 4.7146 45 1 10.5943 3.3211 1.1192 46 1 11.6650 2.2560 2.0616 47 1 10.2895 1.5681 1.1659 48 1 8.8019 4.6121 1.4127 49 1 6.4802 4.9970 0.6882 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204399707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:18 Heat of formation + Delta-G solvation = 15.035615 kcal Electronic energy + Delta-G solvation = -23656.794953 eV Core-core repulsion = 20583.268654 eV Total energy + Delta-G solvation = -3073.526300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.48088 -37.05821 -35.68391 -33.98492 -31.65261 -30.55190 -30.23578 -28.07714 -27.25537 -27.17433 -25.51672 -24.03758 -21.79480 -21.71645 -20.97575 -19.92196 -18.85670 -17.00270 -15.99640 -15.40069 -14.89223 -14.75567 -14.33911 -14.22429 -14.12230 -13.76329 -13.41754 -13.38216 -13.01003 -12.86623 -12.55542 -12.40660 -12.15149 -12.07818 -11.92565 -11.67200 -11.63908 -11.54086 -11.13419 -11.01867 -10.84166 -10.83177 -10.69542 -10.53920 -10.40339 -10.28928 -10.12482 -9.84539 -9.82645 -9.54990 -8.52124 -8.27969 -7.90727 -6.82781 -6.00780 -3.40041 1.95732 2.04599 3.29899 3.46257 3.51556 4.31274 4.51789 4.77808 4.88844 5.06065 5.13699 5.24849 5.35679 5.43168 5.48415 5.54100 5.54166 5.56874 5.58836 5.65862 5.76021 5.79818 5.89246 5.90649 5.92138 5.96791 6.04020 6.11819 6.12456 6.18699 6.22853 6.24974 6.28881 6.32950 6.37998 6.43336 6.48084 6.53352 6.64122 6.67924 6.74079 6.91996 7.05416 7.11445 7.16191 7.43059 7.66142 8.05202 8.39977 8.98133 9.70539 10.12453 11.14660 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004841 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.464688 B = 5782.390518 C = 7011.473679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.152 3.848 5 N -0.596 5.596 6 C -0.261 4.261 7 H 0.077 0.923 8 C 0.039 3.961 9 N -0.897 5.897 10 Si 0.868 3.132 11 H -0.286 1.286 12 H -0.301 1.301 13 H -0.265 1.265 14 C 0.168 3.832 15 C -0.080 4.080 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.090 4.090 19 C -0.026 4.026 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.118 4.118 24 C -0.090 4.090 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.111 0.889 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -7.738 11.375 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.026 3.974 5 N -0.316 5.316 6 C -0.389 4.389 7 H 0.094 0.906 8 C -0.162 4.162 9 N -0.537 5.537 10 Si 0.698 3.302 11 H -0.214 1.214 12 H -0.230 1.230 13 H -0.190 1.190 14 C 0.043 3.957 15 C -0.083 4.083 16 C -0.136 4.136 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.026 4.026 20 C -0.194 4.194 21 C -0.198 4.198 22 C -0.195 4.195 23 C -0.136 4.136 24 C -0.109 4.109 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.129 0.871 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.416 -7.582 11.247 14.606 hybrid contribution -0.774 0.634 0.425 1.087 sum 4.643 -6.948 11.672 14.355 Atomic orbital electron populations 1.21771 0.96738 1.00605 1.01625 1.21502 0.95116 0.98169 1.01209 1.22233 0.99203 0.94666 1.01902 1.20914 0.91058 0.86329 0.99054 1.44110 1.74679 1.11410 1.01450 1.18748 1.36194 0.93404 0.90578 0.90553 1.25443 0.97633 0.96794 0.96330 1.69888 1.40892 1.06890 1.36076 0.87066 0.84086 0.78916 0.80149 1.21375 1.22951 1.18968 1.20236 0.89705 0.97536 0.88225 1.20860 0.98646 0.94282 0.94478 1.20934 0.95983 0.97706 0.99025 1.20961 0.92764 0.99452 1.01527 1.19568 0.93983 0.96097 0.99352 1.19418 0.92258 0.95565 0.95354 1.21875 1.00240 0.97403 0.99861 1.21932 1.01203 0.97189 0.99454 1.21879 0.98260 1.02275 0.97057 1.20880 0.96398 0.97628 0.98699 1.21114 0.92172 0.99700 0.97871 0.93201 0.92878 0.93510 0.92354 0.92783 0.93272 0.91718 0.93153 0.94458 0.92757 0.92205 0.93555 0.87176 0.86736 0.92697 0.92873 0.92431 0.92370 0.92899 0.92464 0.92357 0.92907 0.92525 0.87084 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.75 5.93 -26.72 -0.16 -1.91 16 3 C -0.14 -2.54 5.54 -26.73 -0.15 -2.68 16 4 C 0.15 3.01 5.67 -4.04 -0.02 2.98 16 5 N -0.60 -13.87 2.05 -174.61 -0.36 -14.23 16 6 C -0.26 -7.12 9.90 -15.06 -0.15 -7.27 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.04 1.09 5.29 -17.43 -0.09 1.00 16 9 N -0.90 -26.81 13.97 55.49 0.78 -26.03 16 10 Si 0.87 21.82 25.09 -169.99 -4.27 17.55 16 11 H -0.29 -7.02 6.68 56.52 0.38 -6.65 16 12 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.17 3.66 4.63 -5.19 -0.02 3.64 16 15 C -0.08 -1.61 5.46 -104.63 -0.57 -2.18 16 16 C -0.12 -2.04 9.70 -39.58 -0.38 -2.43 16 17 C -0.13 -2.01 8.98 -39.58 -0.36 -2.37 16 18 C -0.09 -1.38 4.76 -104.63 -0.50 -1.88 16 19 C -0.03 -0.32 0.85 -155.66 -0.13 -0.45 16 20 C -0.14 -1.51 8.29 37.16 0.31 -1.21 16 21 C -0.14 -1.49 7.13 37.16 0.27 -1.22 16 22 C -0.14 -1.63 8.29 37.16 0.31 -1.32 16 23 C -0.12 -2.05 8.71 -39.58 -0.34 -2.39 16 24 C -0.09 -1.83 9.70 -39.58 -0.38 -2.21 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 33 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 1.42 3.32 -51.93 -0.17 1.25 16 36 H 0.05 0.91 8.01 -51.93 -0.42 0.50 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.11 1.51 5.90 -52.49 -0.31 1.20 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 42 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 45 H 0.06 0.72 7.39 -51.93 -0.38 0.33 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.11 1.75 7.10 -52.48 -0.37 1.38 16 49 H 0.12 2.75 8.06 -52.49 -0.42 2.32 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -29.06 381.20 -9.28 -38.34 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -9.16 Total: 2.09 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -2.02 Total: -23.47 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.42 Total: -40.26 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.27 Total: 17.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.06 -9.28 -38.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204399707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.376 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds