Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53010 * 109.46825 * 2 1 4 4 C 1.52997 * 109.46970 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47150 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99873 * 269.92685 * 5 4 3 7 7 H 1.07994 * 119.99817 * 321.75333 * 6 5 4 8 8 C 1.38810 * 119.99858 * 141.76395 * 6 5 4 9 9 N 1.31618 * 119.99903 * 157.16739 * 8 6 5 10 10 Si 1.86796 * 120.00219 * 337.16302 * 8 6 5 11 11 H 1.48504 * 109.47003 * 95.70242 * 10 8 6 12 12 H 1.48499 * 109.47571 * 215.70422 * 10 8 6 13 13 H 1.48501 * 109.47043 * 335.70441 * 10 8 6 14 14 C 1.46502 * 119.99984 * 89.64577 * 5 4 3 15 15 C 1.50698 * 109.46953 * 90.00180 * 14 5 4 16 16 C 1.38233 * 120.00107 * 269.72863 * 15 14 5 17 17 C 1.38238 * 120.00259 * 179.76779 * 16 15 14 18 18 C 1.38241 * 119.99638 * 0.50329 * 17 16 15 19 19 C 1.50692 * 119.99942 * 179.72719 * 18 17 16 20 20 C 1.53006 * 109.46998 * 240.02398 * 19 18 17 21 21 C 1.53003 * 109.47514 * 0.02562 * 19 18 17 22 22 C 1.52996 * 109.47239 * 120.02175 * 19 18 17 23 23 C 1.38231 * 119.99862 * 359.75016 * 18 17 16 24 24 C 1.38232 * 120.00055 * 89.99916 * 15 14 5 25 25 H 1.09000 * 109.47332 * 300.00291 * 1 2 3 26 26 H 1.09004 * 109.46610 * 60.00421 * 1 2 3 27 27 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47136 * 240.00458 * 2 1 3 29 29 H 1.08998 * 109.46958 * 119.99272 * 2 1 3 30 30 H 1.09000 * 109.46878 * 59.99770 * 3 2 1 31 31 H 1.09005 * 109.46669 * 299.99789 * 3 2 1 32 32 H 1.09000 * 109.47343 * 59.99613 * 4 3 2 33 33 H 1.09005 * 109.46965 * 300.00139 * 4 3 2 34 34 H 0.97002 * 120.00109 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47190 * 209.99993 * 14 5 4 36 36 H 1.09000 * 109.46939 * 330.00194 * 14 5 4 37 37 H 1.08001 * 120.00301 * 359.97438 * 16 15 14 38 38 H 1.08002 * 120.00445 * 180.22656 * 17 16 15 39 39 H 1.08995 * 109.47285 * 59.99952 * 20 19 18 40 40 H 1.09003 * 109.47017 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47072 * 299.99399 * 20 19 18 42 42 H 1.09005 * 109.46381 * 60.00021 * 21 19 18 43 43 H 1.08992 * 109.47510 * 179.97438 * 21 19 18 44 44 H 1.09003 * 109.47312 * 300.01002 * 21 19 18 45 45 H 1.08997 * 109.47397 * 60.00254 * 22 19 18 46 46 H 1.09003 * 109.47051 * 180.02562 * 22 19 18 47 47 H 1.08996 * 109.47080 * 299.99693 * 22 19 18 48 48 H 1.08004 * 120.00054 * 179.97438 * 23 18 17 49 49 H 1.08001 * 119.99835 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.2874 3.4685 -1.1875 7 1 4.7119 2.9297 -2.0216 8 6 3.9743 4.8146 -1.3176 9 7 4.5721 5.5434 -2.2362 10 14 2.7044 5.5915 -0.1893 11 1 3.3913 6.2415 0.9557 12 1 1.9285 6.6087 -0.9433 13 1 1.7839 4.5419 0.3168 14 6 4.2956 3.5175 1.2672 15 6 5.7165 3.2818 1.7104 16 6 6.0185 2.2008 2.5172 17 6 7.3227 1.9818 2.9199 18 6 8.3232 2.8498 2.5241 19 6 9.7439 2.6146 2.9681 20 6 10.2323 3.8196 3.7746 21 6 9.8046 1.3588 3.8400 22 6 10.6374 2.4266 1.7404 23 6 8.0203 3.9337 1.7216 24 6 6.7170 4.1497 1.3147 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8901 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 4.3530 6.4840 -2.3274 35 1 4.1293 4.5864 1.1334 36 1 3.6107 3.1351 2.0240 37 1 5.2362 1.5253 2.8304 38 1 7.5593 1.1351 3.5473 39 1 9.5958 3.9535 4.6492 40 1 11.2598 3.6493 4.0962 41 1 10.1892 4.7142 3.1534 42 1 9.4567 0.5004 3.2653 43 1 10.8323 1.1884 4.1608 44 1 9.1680 1.4926 4.7146 45 1 10.5943 3.3211 1.1192 46 1 11.6650 2.2560 2.0616 47 1 10.2895 1.5681 1.1659 48 1 8.8019 4.6121 1.4127 49 1 6.4802 4.9970 0.6882 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204399707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = 2.260158 kcal Electronic energy + Delta-G solvation = -23657.348939 eV Core-core repulsion = 20583.268654 eV Total energy + Delta-G solvation = -3074.080285 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.77666 -38.57521 -36.97425 -35.45484 -33.66973 -31.90274 -31.64664 -29.58386 -28.15541 -28.07305 -27.22278 -25.67175 -23.19890 -23.06806 -22.37335 -21.51516 -20.01010 -18.93800 -17.45343 -17.10709 -16.31286 -16.17462 -15.80334 -15.71464 -15.21307 -15.07899 -14.80547 -14.64671 -14.43865 -14.33992 -14.12718 -13.69492 -13.53764 -13.33937 -13.31589 -12.83685 -12.74705 -12.70735 -12.50801 -12.41895 -12.32490 -12.18858 -11.93188 -11.85903 -11.76911 -11.74005 -11.52173 -11.40486 -11.28624 -11.24637 -10.65132 -9.68147 -9.31509 -8.76183 -8.21170 -5.56687 0.56575 0.63814 1.26218 1.36737 1.47651 2.39660 2.85400 3.13572 3.50240 3.74124 3.87877 4.12508 4.16161 4.16786 4.17732 4.24281 4.29790 4.41160 4.45520 4.48676 4.54787 4.64313 4.75877 4.79601 4.81179 4.84748 4.92198 4.93703 4.99888 5.04543 5.05124 5.06686 5.08275 5.13922 5.18231 5.23478 5.29133 5.34107 5.39474 5.44187 5.47701 5.49208 5.60587 5.70783 5.83425 5.91554 5.96988 6.18147 6.27417 6.98709 7.62952 8.06161 8.98753 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004841 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.464688 B = 5782.390518 C = 7011.473679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.245 4.245 7 H 0.035 0.965 8 C -0.011 4.011 9 N -0.945 5.945 10 Si 0.929 3.071 11 H -0.280 1.280 12 H -0.309 1.309 13 H -0.252 1.252 14 C 0.168 3.832 15 C -0.103 4.103 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.081 4.081 19 C -0.027 4.027 20 C -0.135 4.135 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.124 4.124 24 C -0.119 4.119 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.047 0.953 48 H 0.118 0.882 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -10.344 14.726 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.172 4.172 4 C 0.025 3.975 5 N -0.328 5.328 6 C -0.375 4.375 7 H 0.053 0.947 8 C -0.208 4.208 9 N -0.589 5.589 10 Si 0.758 3.242 11 H -0.208 1.208 12 H -0.238 1.238 13 H -0.176 1.176 14 C 0.043 3.957 15 C -0.106 4.106 16 C -0.133 4.133 17 C -0.141 4.141 18 C -0.081 4.081 19 C -0.027 4.027 20 C -0.193 4.193 21 C -0.196 4.196 22 C -0.195 4.195 23 C -0.142 4.142 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.136 0.864 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.855 -10.221 14.633 18.785 hybrid contribution -0.754 1.355 -0.595 1.661 sum 5.101 -8.866 14.038 17.370 Atomic orbital electron populations 1.21757 0.95469 1.02040 1.01353 1.21449 0.96199 0.95386 1.02295 1.22097 0.97653 0.97125 1.00298 1.21045 0.92284 0.84354 0.99768 1.44203 1.75414 1.12474 1.00676 1.18532 1.34478 0.93254 0.91226 0.94728 1.25941 0.99319 0.97417 0.98116 1.70007 1.42905 1.07152 1.38857 0.86066 0.81606 0.78085 0.78407 1.20807 1.23825 1.17553 1.20217 0.91616 0.95978 0.87867 1.20722 0.97359 0.95902 0.96592 1.21159 0.97576 0.96696 0.97916 1.21372 0.91855 0.99981 1.00864 1.20003 0.96152 0.94542 0.97403 1.19525 0.89914 0.97246 0.96008 1.21868 1.01577 0.96409 0.99412 1.21929 1.02792 0.95781 0.99127 1.21886 0.99626 1.01300 0.96695 1.20984 0.95251 0.98808 0.99144 1.20978 0.94131 0.99561 0.99113 0.92892 0.93816 0.91223 0.92191 0.90755 0.93385 0.94762 0.94342 0.91703 0.93002 0.94760 0.91006 0.84847 0.83301 0.92709 0.90632 0.93413 0.92371 0.90917 0.91824 0.93596 0.90478 0.93421 0.86365 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.12 -3.03 5.93 30.60 0.18 -2.84 16 3 C -0.13 -4.62 5.54 30.60 0.17 -4.45 16 4 C 0.15 5.81 5.67 86.38 0.49 6.30 16 5 N -0.61 -28.60 2.05 -706.35 -1.45 -30.05 16 6 C -0.24 -14.05 9.90 84.03 0.83 -13.21 16 7 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 8 C -0.01 -0.67 5.29 84.86 0.45 -0.22 16 9 N -0.95 -59.83 13.97 21.65 0.30 -59.53 16 10 Si 0.93 46.99 25.09 68.60 1.72 48.71 16 11 H -0.28 -13.79 6.68 99.48 0.66 -13.12 16 12 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 13 H -0.25 -12.01 7.11 99.48 0.71 -11.31 16 14 C 0.17 7.28 4.63 85.63 0.40 7.68 16 15 C -0.10 -4.14 5.46 -19.87 -0.11 -4.25 16 16 C -0.11 -3.70 9.70 22.27 0.22 -3.49 16 17 C -0.12 -3.44 8.98 22.27 0.20 -3.24 16 18 C -0.08 -2.33 4.76 -19.87 -0.09 -2.42 16 19 C -0.03 -0.58 0.85 -52.93 -0.05 -0.62 16 20 C -0.14 -2.62 8.29 71.98 0.60 -2.02 16 21 C -0.14 -2.33 7.13 71.98 0.51 -1.81 16 22 C -0.14 -2.94 8.29 71.98 0.60 -2.35 16 23 C -0.12 -4.34 8.71 22.27 0.19 -4.14 16 24 C -0.12 -5.04 9.70 22.27 0.22 -4.83 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.04 1.56 8.04 -2.39 -0.02 1.54 16 33 H 0.06 2.15 8.08 -2.38 -0.02 2.13 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.03 1.66 3.32 -2.39 -0.01 1.65 16 36 H 0.07 2.70 8.01 -2.39 -0.02 2.68 16 37 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.15 3.17 5.90 -2.91 -0.02 3.15 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.01 7.39 -2.39 -0.02 0.99 16 42 H 0.06 0.99 7.51 -2.38 -0.02 0.97 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 1.00 7.51 -2.39 -0.02 0.98 16 45 H 0.04 1.08 7.39 -2.39 -0.02 1.06 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.12 3.83 7.10 -2.91 -0.02 3.81 16 49 H 0.08 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -67.05 381.20 6.92 -60.13 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.83 Total: 19.42 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 5.52 Total: -38.67 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -1.15 Total: -89.58 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.72 Total: 48.71 kcal Total: -67.05 6.92 -60.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204399707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.390 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds