Wall clock time and date at job start Tue Mar 31 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 N 1.46909 * 109.46799 * 174.87387 * 3 2 1 5 5 C 1.46898 * 110.99496 * 199.74883 * 4 3 2 6 6 C 1.50701 * 109.47164 * 66.05009 * 5 4 3 7 7 H 1.08007 * 120.00182 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00083 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00210 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00019 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47190 * 89.99988 * 10 8 6 12 12 H 1.48499 * 109.47202 * 209.99639 * 10 8 6 13 13 H 1.48495 * 109.47060 * 329.99629 * 10 8 6 14 14 C 1.46899 * 110.99863 * 75.79838 * 4 3 2 15 15 C 1.53004 * 109.46744 * 199.63998 * 14 4 3 16 16 C 1.50702 * 109.46717 * 174.87537 * 15 14 4 17 17 C 1.38232 * 119.99794 * 269.71869 * 16 15 14 18 18 C 1.38239 * 120.00032 * 180.32376 * 17 16 15 19 19 C 1.38233 * 119.99843 * 359.96171 * 18 17 16 20 20 C 1.50697 * 119.99848 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47320 * 300.01577 * 20 19 18 22 22 C 1.52999 * 109.47080 * 60.02442 * 20 19 18 23 23 C 1.38240 * 119.99890 * 0.02562 * 19 18 17 24 24 C 1.38230 * 120.00088 * 0.02562 * 23 19 18 25 25 H 1.09009 * 109.46935 * 299.99726 * 1 2 3 26 26 H 1.08995 * 109.47024 * 59.99643 * 1 2 3 27 27 H 1.08992 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46736 * 239.99797 * 2 1 3 29 29 H 1.09002 * 109.47360 * 120.00314 * 2 1 3 30 30 H 1.09000 * 109.47100 * 54.87864 * 3 2 1 31 31 H 1.08995 * 109.47232 * 294.87124 * 3 2 1 32 32 H 1.09000 * 109.46753 * 186.04320 * 5 4 3 33 33 H 1.08998 * 109.47800 * 306.04727 * 5 4 3 34 34 H 0.96997 * 120.00389 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47372 * 79.64458 * 14 4 3 36 36 H 1.08999 * 109.47137 * 319.63972 * 14 4 3 37 37 H 1.09000 * 109.46839 * 54.87586 * 15 14 4 38 38 H 1.08998 * 109.47263 * 294.87764 * 15 14 4 39 39 H 1.07998 * 120.00390 * 0.28964 * 17 16 15 40 40 H 1.08000 * 119.99852 * 179.97438 * 18 17 16 41 41 H 1.09006 * 109.46771 * 180.02562 * 20 19 18 42 42 H 1.09006 * 109.46563 * 60.00649 * 21 20 19 43 43 H 1.09002 * 109.47376 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47504 * 300.00757 * 21 20 19 45 45 H 1.08994 * 109.47807 * 59.99772 * 22 20 19 46 46 H 1.09002 * 109.47161 * 180.02562 * 22 20 19 47 47 H 1.09006 * 109.46792 * 299.99342 * 22 20 19 48 48 H 1.07999 * 119.99626 * 179.97438 * 23 19 18 49 49 H 1.07996 * 120.00074 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5039 1.4442 0.1238 5 6 3.9910 2.7489 0.5912 6 6 3.5119 2.9887 1.9998 7 1 2.9057 2.2464 2.4978 8 6 3.8473 4.1558 2.6527 9 7 3.4288 4.3653 3.8818 10 14 4.8951 5.4400 1.7912 11 1 4.0153 6.3912 1.0657 12 1 5.6995 6.1788 2.7974 13 1 5.8036 4.7711 0.8257 14 6 4.1400 1.0689 -1.1461 15 6 5.5744 0.6073 -0.8810 16 6 6.1852 0.1040 -2.1635 17 6 6.0708 -1.2301 -2.5065 18 6 6.6368 -1.6932 -3.6797 19 6 7.3164 -0.8218 -4.5101 20 6 7.9339 -1.3267 -5.7887 21 6 8.9655 -2.4089 -5.4643 22 6 6.8421 -1.9148 -6.6848 23 6 7.4306 0.5125 -4.1672 24 6 6.8655 0.9753 -2.9936 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6037 1.9821 0.8406 31 1 1.7537 1.9291 -0.9323 32 1 5.0808 2.7580 0.5717 33 1 3.6094 3.5343 -0.0611 34 1 3.6651 5.1862 4.3413 35 1 4.1531 1.9299 -1.8143 36 1 3.5770 0.2583 -1.6088 37 1 5.5674 -0.1945 -0.1427 38 1 6.1614 1.4443 -0.5029 39 1 5.5397 -1.9110 -1.8578 40 1 6.5477 -2.7357 -3.9475 41 1 8.4235 -0.5016 -6.3062 42 1 8.4759 -3.2340 -4.9467 43 1 9.4118 -2.7745 -6.3891 44 1 9.7432 -1.9899 -4.8259 45 1 6.1072 -1.1438 -6.9160 46 1 7.2888 -2.2804 -7.6095 47 1 6.3527 -2.7399 -6.1672 48 1 7.9619 1.1932 -4.8158 49 1 6.9550 2.0176 -2.7254 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207521105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:25 Heat of formation + Delta-G solvation = -4.922720 kcal Electronic energy + Delta-G solvation = -22795.576938 eV Core-core repulsion = 19721.185180 eV Total energy + Delta-G solvation = -3074.391758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.70666 -37.46839 -35.78840 -33.20604 -32.66025 -31.39198 -30.85317 -28.35847 -27.38425 -27.24961 -24.77136 -23.23853 -22.71255 -21.54224 -20.96799 -19.94131 -19.57632 -16.87115 -16.44611 -15.62870 -15.21140 -14.89426 -14.69280 -14.30505 -14.10584 -13.80476 -13.66941 -13.60823 -13.46899 -13.18994 -12.68108 -12.63667 -12.43760 -12.37284 -12.18614 -11.83750 -11.62235 -11.42858 -11.38788 -11.21811 -11.01641 -10.90126 -10.76422 -10.67720 -10.59671 -10.46081 -10.19191 -9.80319 -9.71273 -9.23708 -8.85720 -8.56480 -8.40153 -7.36019 -6.04180 -4.00867 1.39876 1.46606 3.28298 3.36198 3.38008 3.79169 4.42707 4.49532 4.60983 4.69632 4.97103 4.99550 5.05565 5.20533 5.23611 5.28536 5.36574 5.41262 5.45757 5.50905 5.55165 5.57581 5.60442 5.70009 5.73743 5.78465 5.82547 5.98390 5.98868 5.99314 6.02196 6.10238 6.13317 6.25474 6.28406 6.33434 6.47387 6.51590 6.56056 6.63496 6.72007 6.76737 6.85675 6.95498 7.02394 7.09065 7.64262 7.96076 8.10373 8.68212 9.05104 9.58048 11.08999 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003546 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.839849 B = 7894.684639 C = 9218.193388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.060 3.940 4 N -0.529 5.529 5 C 0.161 3.839 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.062 3.938 15 C -0.078 4.078 16 C -0.072 4.072 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.090 4.090 20 C -0.055 4.055 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.117 4.117 24 C -0.116 4.116 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.017 0.983 32 H 0.030 0.970 33 H -0.019 1.019 34 H 0.263 0.737 35 H 0.023 0.977 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.139 -12.274 -19.024 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.068 4.068 4 N -0.252 5.252 5 C 0.034 3.966 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.067 4.067 15 C -0.116 4.116 16 C -0.072 4.072 17 C -0.132 4.132 18 C -0.132 4.132 19 C -0.090 4.090 20 C -0.074 4.074 21 C -0.201 4.201 22 C -0.201 4.201 23 C -0.135 4.135 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.048 0.952 33 H -0.001 1.001 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.274 -12.481 -18.514 23.193 hybrid contribution 0.367 1.510 -0.942 1.817 sum 6.640 -10.970 -19.455 23.301 Atomic orbital electron populations 1.21729 0.96490 1.00818 1.01658 1.21517 0.94557 0.97716 1.01707 1.22070 0.88473 0.95764 1.00467 1.61927 1.04984 1.32623 1.25664 1.20217 0.95772 0.84430 0.96146 1.21054 1.32808 1.04017 0.96659 0.90077 1.24898 0.95797 0.97897 0.94753 1.69893 1.46131 1.26366 1.11606 0.86888 0.81156 0.82170 0.79689 1.20409 1.21171 1.19200 1.22018 0.94126 0.98786 0.91730 1.20630 0.95815 1.01853 0.93303 1.20055 0.96999 0.93513 0.96659 1.21071 0.99894 0.95337 0.96915 1.20898 0.98537 0.99159 0.94649 1.19771 0.99217 0.93689 0.96327 1.20093 0.95816 0.98330 0.93139 1.21853 0.98564 0.98319 1.01343 1.21854 0.98325 1.00985 0.98922 1.20996 1.00481 0.94966 0.97079 1.21098 0.98118 0.99657 0.94507 0.92474 0.93395 0.93308 0.93235 0.91268 0.89109 0.96507 0.95248 1.00094 0.92709 0.95830 0.91814 0.90071 0.90870 0.86042 0.86530 0.90752 0.92458 0.92605 0.92550 0.92550 0.92604 0.92456 0.86552 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.86 5.98 -26.73 -0.16 -2.02 16 3 C 0.06 1.16 4.79 -3.82 -0.02 1.14 16 4 N -0.53 -10.98 4.36 -236.07 -1.03 -12.01 16 5 C 0.16 3.89 3.62 -4.98 -0.02 3.87 16 6 C -0.51 -14.34 8.79 -34.44 -0.30 -14.64 16 7 H 0.08 2.49 7.56 -52.48 -0.40 2.10 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 10 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 14 C 0.06 1.08 4.79 -3.82 -0.02 1.06 16 15 C -0.08 -1.25 5.38 -27.88 -0.15 -1.40 16 16 C -0.07 -1.00 5.13 -104.62 -0.54 -1.54 16 17 C -0.11 -1.43 9.70 -39.58 -0.38 -1.82 16 18 C -0.11 -1.28 8.71 -39.58 -0.34 -1.62 16 19 C -0.09 -0.98 4.78 -104.62 -0.50 -1.48 16 20 C -0.06 -0.47 3.09 -91.78 -0.28 -0.76 16 21 C -0.14 -1.09 9.01 37.15 0.33 -0.76 16 22 C -0.14 -1.10 9.01 37.16 0.33 -0.77 16 23 C -0.12 -1.37 9.67 -39.58 -0.38 -1.75 16 24 C -0.12 -1.54 9.70 -39.59 -0.38 -1.93 16 25 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.73 6.90 -51.93 -0.36 0.37 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.99 6.58 -51.93 -0.34 1.65 16 31 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 32 H 0.03 0.72 5.77 -51.93 -0.30 0.42 16 33 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 36 H 0.06 1.02 6.56 -51.93 -0.34 0.68 16 37 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 38 H 0.07 1.26 6.90 -51.93 -0.36 0.91 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.08 7.10 -52.49 -0.37 0.71 16 41 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 42 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 48 H 0.12 1.14 7.95 -52.49 -0.42 0.73 16 49 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 383.22 15.07 5.77 5.77 Total: -1.00 -29.99 383.22 -10.79 -40.78 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -9.10 Total: -0.42 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -2.54 Total: -24.22 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: -0.25 Total: -38.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.99 -10.79 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207521105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.856 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds