Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 N 1.46909 * 109.46799 * 174.87387 * 3 2 1 5 5 C 1.46898 * 110.99496 * 199.74883 * 4 3 2 6 6 C 1.50701 * 109.47164 * 66.05009 * 5 4 3 7 7 H 1.08007 * 120.00182 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00083 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00210 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00019 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47190 * 89.99988 * 10 8 6 12 12 H 1.48499 * 109.47202 * 209.99639 * 10 8 6 13 13 H 1.48495 * 109.47060 * 329.99629 * 10 8 6 14 14 C 1.46899 * 110.99863 * 75.79838 * 4 3 2 15 15 C 1.53004 * 109.46744 * 199.63998 * 14 4 3 16 16 C 1.50702 * 109.46717 * 174.87537 * 15 14 4 17 17 C 1.38232 * 119.99794 * 269.71869 * 16 15 14 18 18 C 1.38239 * 120.00032 * 180.32376 * 17 16 15 19 19 C 1.38233 * 119.99843 * 359.96171 * 18 17 16 20 20 C 1.50697 * 119.99848 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47320 * 300.01577 * 20 19 18 22 22 C 1.52999 * 109.47080 * 60.02442 * 20 19 18 23 23 C 1.38240 * 119.99890 * 0.02562 * 19 18 17 24 24 C 1.38230 * 120.00088 * 0.02562 * 23 19 18 25 25 H 1.09009 * 109.46935 * 299.99726 * 1 2 3 26 26 H 1.08995 * 109.47024 * 59.99643 * 1 2 3 27 27 H 1.08992 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46736 * 239.99797 * 2 1 3 29 29 H 1.09002 * 109.47360 * 120.00314 * 2 1 3 30 30 H 1.09000 * 109.47100 * 54.87864 * 3 2 1 31 31 H 1.08995 * 109.47232 * 294.87124 * 3 2 1 32 32 H 1.09000 * 109.46753 * 186.04320 * 5 4 3 33 33 H 1.08998 * 109.47800 * 306.04727 * 5 4 3 34 34 H 0.96997 * 120.00389 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47372 * 79.64458 * 14 4 3 36 36 H 1.08999 * 109.47137 * 319.63972 * 14 4 3 37 37 H 1.09000 * 109.46839 * 54.87586 * 15 14 4 38 38 H 1.08998 * 109.47263 * 294.87764 * 15 14 4 39 39 H 1.07998 * 120.00390 * 0.28964 * 17 16 15 40 40 H 1.08000 * 119.99852 * 179.97438 * 18 17 16 41 41 H 1.09006 * 109.46771 * 180.02562 * 20 19 18 42 42 H 1.09006 * 109.46563 * 60.00649 * 21 20 19 43 43 H 1.09002 * 109.47376 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47504 * 300.00757 * 21 20 19 45 45 H 1.08994 * 109.47807 * 59.99772 * 22 20 19 46 46 H 1.09002 * 109.47161 * 180.02562 * 22 20 19 47 47 H 1.09006 * 109.46792 * 299.99342 * 22 20 19 48 48 H 1.07999 * 119.99626 * 179.97438 * 23 19 18 49 49 H 1.07996 * 120.00074 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5039 1.4442 0.1238 5 6 3.9910 2.7489 0.5912 6 6 3.5119 2.9887 1.9998 7 1 2.9057 2.2464 2.4978 8 6 3.8473 4.1558 2.6527 9 7 3.4288 4.3653 3.8818 10 14 4.8951 5.4400 1.7912 11 1 4.0153 6.3912 1.0657 12 1 5.6995 6.1788 2.7974 13 1 5.8036 4.7711 0.8257 14 6 4.1400 1.0689 -1.1461 15 6 5.5744 0.6073 -0.8810 16 6 6.1852 0.1040 -2.1635 17 6 6.0708 -1.2301 -2.5065 18 6 6.6368 -1.6932 -3.6797 19 6 7.3164 -0.8218 -4.5101 20 6 7.9339 -1.3267 -5.7887 21 6 8.9655 -2.4089 -5.4643 22 6 6.8421 -1.9148 -6.6848 23 6 7.4306 0.5125 -4.1672 24 6 6.8655 0.9753 -2.9936 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6037 1.9821 0.8406 31 1 1.7537 1.9291 -0.9323 32 1 5.0808 2.7580 0.5717 33 1 3.6094 3.5343 -0.0611 34 1 3.6651 5.1862 4.3413 35 1 4.1531 1.9299 -1.8143 36 1 3.5770 0.2583 -1.6088 37 1 5.5674 -0.1945 -0.1427 38 1 6.1614 1.4443 -0.5029 39 1 5.5397 -1.9110 -1.8578 40 1 6.5477 -2.7357 -3.9475 41 1 8.4235 -0.5016 -6.3062 42 1 8.4759 -3.2340 -4.9467 43 1 9.4118 -2.7745 -6.3891 44 1 9.7432 -1.9899 -4.8259 45 1 6.1072 -1.1438 -6.9160 46 1 7.2888 -2.2804 -7.6095 47 1 6.3527 -2.7399 -6.1672 48 1 7.9619 1.1932 -4.8158 49 1 6.9550 2.0176 -2.7254 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207521105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = -19.675094 kcal Electronic energy + Delta-G solvation = -22796.216649 eV Core-core repulsion = 19721.185180 eV Total energy + Delta-G solvation = -3075.031469 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63508 -38.99119 -36.66619 -34.90970 -34.28153 -32.74001 -31.77881 -30.00492 -28.61769 -27.94605 -26.18576 -24.62250 -23.72661 -22.86484 -22.25329 -21.24035 -20.71624 -19.02059 -17.37197 -16.80348 -16.56758 -16.29853 -16.10422 -15.59749 -15.37557 -15.06392 -14.72902 -14.53985 -14.47560 -14.38094 -14.23349 -13.94256 -13.79165 -13.56671 -13.14023 -12.97975 -12.85500 -12.69904 -12.51808 -12.48373 -12.31770 -12.20551 -11.94854 -11.87200 -11.80090 -11.66894 -11.50999 -11.46087 -11.34562 -11.18774 -10.78933 -9.78243 -9.37561 -9.02777 -8.28917 -6.31244 0.45404 0.54068 1.31794 1.33601 1.44372 2.32802 2.83920 3.03690 3.20183 3.77837 3.85958 4.00867 4.08444 4.15553 4.18406 4.27601 4.29990 4.36082 4.41784 4.55454 4.56992 4.59978 4.64325 4.65447 4.70009 4.77693 4.84091 4.92299 4.95890 4.99997 5.02487 5.05201 5.06993 5.10378 5.19021 5.23355 5.24973 5.28587 5.37829 5.41455 5.42008 5.48088 5.56023 5.58988 5.78073 5.81187 6.02145 6.16554 6.40453 6.66627 6.75074 7.31954 8.87730 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003546 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.839849 B = 7894.684639 C = 9218.193388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.061 3.939 4 N -0.542 5.542 5 C 0.172 3.828 6 C -0.512 4.512 7 H 0.039 0.961 8 C 0.009 3.991 9 N -0.947 5.947 10 Si 0.942 3.058 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.251 1.251 14 C 0.067 3.933 15 C -0.069 4.069 16 C -0.089 4.089 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.087 4.087 20 C -0.055 4.055 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.030 0.970 33 H -0.020 1.020 34 H 0.266 0.734 35 H 0.021 0.979 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.134 0.866 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 -13.332 -22.208 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.067 4.067 4 N -0.266 5.266 5 C 0.045 3.955 6 C -0.550 4.550 7 H 0.057 0.943 8 C -0.188 4.188 9 N -0.588 5.588 10 Si 0.766 3.234 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.175 1.175 14 C -0.060 4.060 15 C -0.107 4.107 16 C -0.090 4.090 17 C -0.138 4.138 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.073 4.073 21 C -0.199 4.199 22 C -0.199 4.199 23 C -0.141 4.141 24 C -0.148 4.148 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.048 0.952 33 H -0.003 1.003 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.152 0.848 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.331 -13.560 -21.715 26.630 hybrid contribution 0.005 1.741 0.037 1.742 sum 7.336 -11.818 -21.679 25.758 Atomic orbital electron populations 1.21700 0.94589 1.02365 1.01594 1.21437 0.96157 0.95118 1.01867 1.22067 0.87583 0.97842 0.99199 1.61890 1.06044 1.30527 1.28090 1.19948 0.95557 0.86260 0.93718 1.21251 1.32049 1.03174 0.98533 0.94259 1.25805 0.97264 1.00356 0.95415 1.70043 1.47908 1.27392 1.13465 0.85783 0.79577 0.79161 0.78867 1.19396 1.20524 1.17453 1.22060 0.94942 0.99161 0.89878 1.20467 0.94811 1.00899 0.94507 1.19886 0.98502 0.94457 0.96135 1.21210 1.00116 0.94795 0.97657 1.21147 0.97836 1.00289 0.93984 1.20122 0.98215 0.93328 0.97032 1.20155 0.96217 0.98908 0.92061 1.21845 0.98117 0.97946 1.02029 1.21845 0.97923 1.00748 0.99415 1.21232 1.00307 0.95843 0.96708 1.21182 0.98715 0.99571 0.95285 0.93820 0.92221 0.90931 0.91253 0.92783 0.92876 0.95523 0.95172 1.00273 0.92456 0.96050 0.89948 0.90686 0.92723 0.85265 0.84448 0.90105 0.92338 0.91087 0.93243 0.93252 0.91095 0.92326 0.84824 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.07 16 2 C -0.11 -3.37 5.98 30.59 0.18 -3.18 16 3 C 0.06 2.38 4.79 86.30 0.41 2.80 16 4 N -0.54 -22.80 4.36 -900.78 -3.92 -26.72 16 5 C 0.17 8.47 3.62 85.56 0.31 8.78 16 6 C -0.51 -30.09 8.79 25.60 0.22 -29.86 16 7 H 0.04 2.57 7.56 -2.91 -0.02 2.55 16 8 C 0.01 0.52 5.47 84.65 0.46 0.99 16 9 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 10 Si 0.94 44.86 27.47 68.60 1.88 46.74 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 14 C 0.07 2.29 4.79 86.30 0.41 2.71 16 15 C -0.07 -2.20 5.38 29.85 0.16 -2.04 16 16 C -0.09 -2.42 5.13 -19.87 -0.10 -2.52 16 17 C -0.12 -2.81 9.70 22.27 0.22 -2.59 16 18 C -0.11 -2.28 8.71 22.27 0.19 -2.09 16 19 C -0.09 -1.68 4.78 -19.87 -0.09 -1.78 16 20 C -0.06 -0.77 3.09 -11.54 -0.04 -0.81 16 21 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 22 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 23 C -0.12 -2.65 9.67 22.27 0.22 -2.43 16 24 C -0.13 -3.32 9.70 22.27 0.22 -3.11 16 25 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.90 6.90 -2.38 -0.02 1.88 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 2.46 6.58 -2.39 -0.02 2.44 16 31 H 0.03 0.97 8.00 -2.39 -0.02 0.96 16 32 H 0.03 1.48 5.77 -2.39 -0.01 1.47 16 33 H -0.02 -1.00 7.55 -2.39 -0.02 -1.02 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.02 0.74 8.00 -2.39 -0.02 0.72 16 36 H 0.08 2.49 6.56 -2.39 -0.02 2.47 16 37 H 0.07 2.43 8.08 -2.39 -0.02 2.41 16 38 H 0.05 1.91 6.90 -2.39 -0.02 1.89 16 39 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.14 2.12 7.10 -2.91 -0.02 2.10 16 41 H 0.08 1.05 7.88 -2.38 -0.02 1.03 16 42 H 0.06 0.70 7.39 -2.38 -0.02 0.69 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.06 0.71 7.39 -2.38 -0.02 0.69 16 48 H 0.13 2.33 7.95 -2.91 -0.02 2.31 16 49 H 0.12 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -66.52 383.22 3.86 -62.65 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.82 Total: 17.36 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.79 Total: -40.41 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.63 Total: -86.35 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -66.52 3.86 -62.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207521105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.976 kcal (2) G-P(sol) polarization free energy of solvation -66.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds