Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.53001 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46989 * 180.02562 * 4 3 2 6 6 C 1.36946 * 119.99973 * 265.78574 * 5 4 3 7 7 H 1.07995 * 119.99873 * 146.21602 * 6 5 4 8 8 C 1.38810 * 119.99739 * 326.21977 * 6 5 4 9 9 N 1.31619 * 120.00244 * 337.67826 * 8 6 5 10 10 Si 1.86804 * 120.00085 * 157.69015 * 8 6 5 11 11 H 1.48504 * 109.47184 * 59.99351 * 10 8 6 12 12 H 1.48495 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46815 * 299.99529 * 10 8 6 14 14 C 1.46498 * 120.00419 * 85.78928 * 5 4 3 15 15 C 1.52997 * 109.47236 * 89.99746 * 14 5 4 16 16 C 1.50700 * 109.47051 * 180.02562 * 15 14 5 17 17 C 1.38239 * 120.00251 * 269.72215 * 16 15 14 18 18 C 1.38229 * 120.00130 * 180.32179 * 17 16 15 19 19 C 1.38231 * 120.00370 * 359.95661 * 18 17 16 20 20 C 1.50698 * 120.00215 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47177 * 300.01870 * 20 19 18 22 22 C 1.52994 * 109.47243 * 60.02269 * 20 19 18 23 23 C 1.38236 * 119.99591 * 0.02562 * 19 18 17 24 24 C 1.38225 * 120.00397 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.47034 * 299.99543 * 1 2 3 26 26 H 1.09000 * 109.47431 * 59.99704 * 1 2 3 27 27 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47034 * 240.00457 * 2 1 3 29 29 H 1.09000 * 109.47431 * 120.00296 * 2 1 3 30 30 H 1.09004 * 109.46870 * 60.00356 * 3 2 1 31 31 H 1.09000 * 109.47285 * 300.00385 * 3 2 1 32 32 H 1.09004 * 109.47034 * 60.00457 * 4 3 2 33 33 H 1.09000 * 109.47431 * 300.00296 * 4 3 2 34 34 H 0.96993 * 120.00498 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46976 * 329.99461 * 14 5 4 36 36 H 1.09002 * 109.47143 * 210.00006 * 14 5 4 37 37 H 1.09003 * 109.47469 * 60.00450 * 15 14 5 38 38 H 1.09002 * 109.47267 * 300.00184 * 15 14 5 39 39 H 1.08000 * 119.99367 * 0.28138 * 17 16 15 40 40 H 1.08000 * 119.99829 * 179.97438 * 18 17 16 41 41 H 1.08999 * 109.47117 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.46733 * 60.00211 * 21 20 19 43 43 H 1.08998 * 109.47314 * 180.02562 * 21 20 19 44 44 H 1.09005 * 109.46924 * 300.00524 * 21 20 19 45 45 H 1.09000 * 109.47349 * 60.00178 * 22 20 19 46 46 H 1.08998 * 109.46961 * 179.97438 * 22 20 19 47 47 H 1.08999 * 109.47103 * 300.00056 * 22 20 19 48 48 H 1.08005 * 120.00093 * 179.97438 * 23 19 18 49 49 H 1.08007 * 120.00269 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3682 3.4410 -1.1826 7 1 4.1990 4.5012 -1.2988 8 6 4.8997 2.7037 -2.2318 9 7 5.5088 1.5620 -1.9916 10 14 4.7508 3.3322 -3.9846 11 1 5.4233 4.6516 -4.0962 12 1 5.3954 2.3686 -4.9125 13 1 3.3158 3.4766 -4.3384 14 6 4.2152 3.5447 1.2656 15 6 5.6261 3.3161 1.8113 16 6 5.7872 4.0573 3.1135 17 6 6.2533 5.3588 3.1150 18 6 6.4074 6.0363 4.3100 19 6 6.0947 5.4129 5.5034 20 6 6.2621 6.1518 6.8061 21 6 7.7265 6.5615 6.9754 22 6 5.3801 7.4018 6.8004 23 6 5.6283 4.1116 5.5018 24 6 5.4741 3.4340 4.3070 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 5.8806 1.0470 -2.7247 35 1 3.4833 3.1784 1.9855 36 1 4.0584 4.6104 1.0985 37 1 6.3580 3.6825 1.0913 38 1 5.7828 2.2505 1.9783 39 1 6.4976 5.8459 2.1826 40 1 6.7719 7.0529 4.3111 41 1 5.9685 5.5036 7.6318 42 1 8.0202 7.2097 6.1497 43 1 7.8478 7.0956 7.9178 44 1 8.3549 5.6709 6.9794 45 1 4.3368 7.1099 6.6799 46 1 5.5009 7.9360 7.7428 47 1 5.6737 8.0500 5.9747 48 1 5.3843 3.6242 6.4343 49 1 5.1101 2.4171 4.3058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207524196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = 2.085820 kcal Electronic energy + Delta-G solvation = -22831.761990 eV Core-core repulsion = 19757.674145 eV Total energy + Delta-G solvation = -3074.087845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.42941 -36.59223 -35.53907 -33.85657 -32.18921 -30.71054 -30.51188 -28.34341 -27.24585 -26.90240 -24.30894 -23.24878 -22.52523 -21.48905 -20.62667 -19.85377 -19.47418 -16.62736 -16.15767 -15.33325 -15.03585 -14.78382 -14.47842 -13.99699 -13.85383 -13.61667 -13.55542 -13.35572 -13.28367 -13.05017 -12.53009 -12.28433 -12.18839 -12.01479 -11.97357 -11.55902 -11.41384 -11.16451 -11.15939 -11.04868 -10.83235 -10.56972 -10.56049 -10.45561 -10.42089 -10.21690 -10.15102 -9.76352 -9.67634 -9.43219 -8.61333 -8.46726 -8.14109 -6.56587 -5.75813 -3.28240 1.67102 1.71251 3.38447 3.44495 3.46931 4.06055 4.50526 4.68116 4.77937 5.12198 5.22524 5.26160 5.28414 5.33810 5.40256 5.49774 5.53911 5.55666 5.64579 5.71239 5.74147 5.75721 5.85839 5.87629 5.95362 6.03927 6.12924 6.16197 6.17233 6.29656 6.35014 6.36415 6.41310 6.50659 6.54724 6.59448 6.67025 6.77570 6.79526 6.85788 6.93667 6.95683 7.16576 7.23273 7.32840 7.38771 7.79874 7.86136 8.53771 9.22507 9.86395 10.42689 11.24436 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.003553 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.272834 B = 7878.827144 C = 9118.525426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.144 3.856 5 N -0.584 5.584 6 C -0.256 4.256 7 H 0.061 0.939 8 C 0.009 3.991 9 N -0.888 5.888 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.158 3.842 15 C -0.102 4.102 16 C -0.062 4.062 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.099 4.099 20 C -0.053 4.053 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.118 4.118 24 C -0.121 4.121 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.018 0.982 34 H 0.254 0.746 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.113 0.887 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 4.895 14.824 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.174 4.174 4 C 0.018 3.982 5 N -0.303 5.303 6 C -0.386 4.386 7 H 0.078 0.922 8 C -0.190 4.190 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.208 1.208 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.031 3.969 15 C -0.142 4.142 16 C -0.063 4.063 17 C -0.137 4.137 18 C -0.131 4.131 19 C -0.099 4.099 20 C -0.072 4.072 21 C -0.200 4.200 22 C -0.201 4.201 23 C -0.136 4.136 24 C -0.139 4.139 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.131 0.869 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.837 4.781 14.684 15.465 hybrid contribution -0.003 0.211 -0.941 0.965 sum -0.839 4.992 13.743 14.645 Atomic orbital electron populations 1.21774 0.97063 1.00418 1.01313 1.21472 0.94581 0.98605 1.01281 1.22176 1.00507 0.94180 1.00548 1.20994 0.89115 0.86392 1.01718 1.43945 1.73563 1.11886 1.00918 1.19053 1.35905 0.93938 0.89673 0.92152 1.25058 0.97080 0.97888 0.99004 1.69973 1.36464 1.15842 1.30790 0.86489 0.77944 0.78115 0.84987 1.20808 1.21661 1.20980 1.20867 0.91841 0.96101 0.88088 1.21369 1.02110 0.98936 0.91750 1.20300 0.95759 0.94368 0.95894 1.21099 1.00099 0.94668 0.97787 1.20870 1.00811 0.99390 0.92074 1.19689 1.01151 0.94551 0.94481 1.20059 0.95850 0.96501 0.94758 1.21854 0.95452 1.01356 1.01387 1.21851 0.99734 0.96976 1.01498 1.20947 1.00641 0.94287 0.97700 1.21048 1.00931 0.99939 0.92019 0.93329 0.93094 0.93686 0.92351 0.92920 0.94211 0.92575 0.88287 0.96390 0.93574 0.94791 0.94001 0.90817 0.91945 0.86188 0.86822 0.90919 0.92483 0.92769 0.92622 0.92565 0.92777 0.92471 0.86866 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.70 5.54 -26.73 -0.15 -2.84 16 4 C 0.14 3.36 5.25 -4.04 -0.02 3.34 16 5 N -0.58 -14.37 2.45 -173.24 -0.43 -14.80 16 6 C -0.26 -6.91 9.49 -15.06 -0.14 -7.05 16 7 H 0.06 1.63 7.92 -52.49 -0.42 1.22 16 8 C 0.01 0.26 4.93 -17.43 -0.09 0.17 16 9 N -0.89 -25.16 11.32 55.49 0.63 -24.54 16 10 Si 0.90 21.47 29.61 -169.99 -5.03 16.43 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.16 3.35 5.67 -4.04 -0.02 3.32 16 15 C -0.10 -2.01 5.67 -27.88 -0.16 -2.17 16 16 C -0.06 -1.05 5.13 -104.62 -0.54 -1.59 16 17 C -0.12 -1.85 9.70 -39.58 -0.38 -2.24 16 18 C -0.11 -1.54 8.71 -39.59 -0.34 -1.88 16 19 C -0.10 -1.26 4.78 -104.63 -0.50 -1.76 16 20 C -0.05 -0.53 3.09 -91.77 -0.28 -0.82 16 21 C -0.14 -1.30 9.01 37.16 0.33 -0.96 16 22 C -0.14 -1.31 9.01 37.15 0.33 -0.98 16 23 C -0.12 -1.58 9.67 -39.59 -0.38 -1.96 16 24 C -0.12 -1.85 9.70 -39.59 -0.38 -2.23 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 2.62 5.32 -51.93 -0.28 2.34 16 33 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 34 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.07 1.62 8.08 -51.93 -0.42 1.20 16 38 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.11 1.32 7.10 -52.49 -0.37 0.95 16 41 H 0.07 0.68 7.88 -51.93 -0.41 0.27 16 42 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.53 7.39 -51.93 -0.38 0.14 16 48 H 0.11 1.27 7.95 -52.48 -0.42 0.85 16 49 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -27.98 391.23 -10.84 -38.82 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -9.39 Total: 1.79 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -2.52 Total: -23.60 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.20 Total: -39.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -27.98 -10.84 -38.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207524196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.901 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds