Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.53001 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46989 * 180.02562 * 4 3 2 6 6 C 1.36946 * 119.99973 * 265.78574 * 5 4 3 7 7 H 1.07995 * 119.99873 * 146.21602 * 6 5 4 8 8 C 1.38810 * 119.99739 * 326.21977 * 6 5 4 9 9 N 1.31619 * 120.00244 * 337.67826 * 8 6 5 10 10 Si 1.86804 * 120.00085 * 157.69015 * 8 6 5 11 11 H 1.48504 * 109.47184 * 59.99351 * 10 8 6 12 12 H 1.48495 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46815 * 299.99529 * 10 8 6 14 14 C 1.46498 * 120.00419 * 85.78928 * 5 4 3 15 15 C 1.52997 * 109.47236 * 89.99746 * 14 5 4 16 16 C 1.50700 * 109.47051 * 180.02562 * 15 14 5 17 17 C 1.38239 * 120.00251 * 269.72215 * 16 15 14 18 18 C 1.38229 * 120.00130 * 180.32179 * 17 16 15 19 19 C 1.38231 * 120.00370 * 359.95661 * 18 17 16 20 20 C 1.50698 * 120.00215 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47177 * 300.01870 * 20 19 18 22 22 C 1.52994 * 109.47243 * 60.02269 * 20 19 18 23 23 C 1.38236 * 119.99591 * 0.02562 * 19 18 17 24 24 C 1.38225 * 120.00397 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.47034 * 299.99543 * 1 2 3 26 26 H 1.09000 * 109.47431 * 59.99704 * 1 2 3 27 27 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47034 * 240.00457 * 2 1 3 29 29 H 1.09000 * 109.47431 * 120.00296 * 2 1 3 30 30 H 1.09004 * 109.46870 * 60.00356 * 3 2 1 31 31 H 1.09000 * 109.47285 * 300.00385 * 3 2 1 32 32 H 1.09004 * 109.47034 * 60.00457 * 4 3 2 33 33 H 1.09000 * 109.47431 * 300.00296 * 4 3 2 34 34 H 0.96993 * 120.00498 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46976 * 329.99461 * 14 5 4 36 36 H 1.09002 * 109.47143 * 210.00006 * 14 5 4 37 37 H 1.09003 * 109.47469 * 60.00450 * 15 14 5 38 38 H 1.09002 * 109.47267 * 300.00184 * 15 14 5 39 39 H 1.08000 * 119.99367 * 0.28138 * 17 16 15 40 40 H 1.08000 * 119.99829 * 179.97438 * 18 17 16 41 41 H 1.08999 * 109.47117 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.46733 * 60.00211 * 21 20 19 43 43 H 1.08998 * 109.47314 * 180.02562 * 21 20 19 44 44 H 1.09005 * 109.46924 * 300.00524 * 21 20 19 45 45 H 1.09000 * 109.47349 * 60.00178 * 22 20 19 46 46 H 1.08998 * 109.46961 * 179.97438 * 22 20 19 47 47 H 1.08999 * 109.47103 * 300.00056 * 22 20 19 48 48 H 1.08005 * 120.00093 * 179.97438 * 23 19 18 49 49 H 1.08007 * 120.00269 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3682 3.4410 -1.1826 7 1 4.1990 4.5012 -1.2988 8 6 4.8997 2.7037 -2.2318 9 7 5.5088 1.5620 -1.9916 10 14 4.7508 3.3322 -3.9846 11 1 5.4233 4.6516 -4.0962 12 1 5.3954 2.3686 -4.9125 13 1 3.3158 3.4766 -4.3384 14 6 4.2152 3.5447 1.2656 15 6 5.6261 3.3161 1.8113 16 6 5.7872 4.0573 3.1135 17 6 6.2533 5.3588 3.1150 18 6 6.4074 6.0363 4.3100 19 6 6.0947 5.4129 5.5034 20 6 6.2621 6.1518 6.8061 21 6 7.7265 6.5615 6.9754 22 6 5.3801 7.4018 6.8004 23 6 5.6283 4.1116 5.5018 24 6 5.4741 3.4340 4.3070 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 5.8806 1.0470 -2.7247 35 1 3.4833 3.1784 1.9855 36 1 4.0584 4.6104 1.0985 37 1 6.3580 3.6825 1.0913 38 1 5.7828 2.2505 1.9783 39 1 6.4976 5.8459 2.1826 40 1 6.7719 7.0529 4.3111 41 1 5.9685 5.5036 7.6318 42 1 8.0202 7.2097 6.1497 43 1 7.8478 7.0956 7.9178 44 1 8.3549 5.6709 6.9794 45 1 4.3368 7.1099 6.6799 46 1 5.5009 7.9360 7.7428 47 1 5.6737 8.0500 5.9747 48 1 5.3843 3.6242 6.4343 49 1 5.1101 2.4171 4.3058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207524196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -7.764659 kcal Electronic energy + Delta-G solvation = -22832.189139 eV Core-core repulsion = 19757.674145 eV Total energy + Delta-G solvation = -3074.514994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56065 -38.29873 -36.66006 -35.35180 -33.90818 -32.23461 -31.74428 -29.81027 -28.50151 -27.93213 -26.06752 -24.68851 -23.71147 -22.80153 -22.10796 -21.42232 -20.68051 -18.61679 -17.24004 -16.89012 -16.53549 -16.18298 -15.93436 -15.47390 -15.33493 -14.93904 -14.72036 -14.44793 -14.40777 -14.24175 -13.79599 -13.76962 -13.53069 -13.39137 -13.12200 -12.96276 -12.87803 -12.71149 -12.50511 -12.33610 -12.20241 -12.10230 -11.91068 -11.84725 -11.77594 -11.62154 -11.49492 -11.42732 -11.35215 -11.22444 -10.50696 -9.75888 -9.36710 -8.56677 -7.82079 -5.38772 0.50380 0.56438 1.45123 1.47777 1.54242 2.51101 2.89875 3.24774 3.61218 3.82102 3.90346 4.15102 4.18158 4.19932 4.21953 4.36634 4.37971 4.40614 4.45034 4.59521 4.64876 4.66783 4.70971 4.75605 4.82414 4.85334 4.97082 5.01568 5.03616 5.04352 5.09197 5.10876 5.11635 5.16356 5.27770 5.28918 5.33433 5.39995 5.43555 5.44046 5.50139 5.57853 5.63185 5.68337 5.79898 5.89035 5.91555 6.20190 6.46748 7.17517 7.88219 8.39161 9.14701 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.003553 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.272834 B = 7878.827144 C = 9118.525426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.146 3.854 5 N -0.601 5.601 6 C -0.266 4.266 7 H 0.055 0.945 8 C -0.035 4.035 9 N -0.916 5.916 10 Si 0.954 3.046 11 H -0.276 1.276 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.161 3.839 15 C -0.082 4.082 16 C -0.085 4.085 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.091 4.091 20 C -0.052 4.052 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.118 4.118 24 C -0.127 4.127 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.251 0.749 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.141 0.859 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 5.753 17.101 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.161 4.161 4 C 0.020 3.980 5 N -0.321 5.321 6 C -0.397 4.397 7 H 0.072 0.928 8 C -0.233 4.233 9 N -0.560 5.560 10 Si 0.782 3.218 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.035 3.965 15 C -0.122 4.122 16 C -0.086 4.086 17 C -0.149 4.149 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.071 4.071 21 C -0.200 4.200 22 C -0.200 4.200 23 C -0.136 4.136 24 C -0.146 4.146 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.158 0.842 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.646 5.652 16.982 17.974 hybrid contribution 0.281 -0.002 -1.512 1.538 sum -1.365 5.651 15.470 16.526 Atomic orbital electron populations 1.21718 0.94587 1.02029 1.01656 1.21433 0.96717 0.96094 1.01336 1.21983 0.97869 0.96403 0.99826 1.20915 0.91259 0.85652 1.00154 1.44158 1.74141 1.12309 1.01459 1.19248 1.35491 0.93909 0.91019 0.92767 1.25698 0.97125 0.98274 1.02167 1.70107 1.37560 1.16958 1.31366 0.85559 0.77811 0.77626 0.80808 1.20197 1.21765 1.20649 1.20871 0.93055 0.95422 0.87147 1.20986 1.00154 0.98179 0.92858 1.20037 0.98635 0.95009 0.94942 1.21144 1.00670 0.94465 0.98658 1.21081 1.00289 1.00214 0.91510 1.20110 0.98982 0.94414 0.95569 1.20142 0.96791 0.96831 0.93315 1.21850 0.94458 1.01287 1.02367 1.21848 0.99051 0.96576 1.02499 1.21259 0.99823 0.94553 0.97937 1.21149 1.00957 1.00322 0.92122 0.92356 0.93407 0.91464 0.93389 0.91837 0.93369 0.94652 0.91339 0.96356 0.93986 0.93432 0.94473 0.94015 0.93490 0.86898 0.84805 0.89627 0.92721 0.90872 0.93189 0.93178 0.90876 0.92725 0.84151 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.12 -3.88 5.93 30.60 0.18 -3.70 16 3 C -0.12 -4.89 5.54 30.60 0.17 -4.72 16 4 C 0.15 7.03 5.25 86.38 0.45 7.48 16 5 N -0.60 -30.59 2.45 -702.01 -1.72 -32.31 16 6 C -0.27 -14.85 9.49 84.03 0.80 -14.05 16 7 H 0.05 3.03 7.92 -2.91 -0.02 3.00 16 8 C -0.04 -1.99 4.93 84.86 0.42 -1.57 16 9 N -0.92 -53.76 11.32 21.65 0.25 -53.51 16 10 Si 0.95 45.11 29.61 68.60 2.03 47.14 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 C 0.16 7.04 5.67 86.38 0.49 7.53 16 15 C -0.08 -3.40 5.67 29.85 0.17 -3.23 16 16 C -0.09 -2.93 5.13 -19.86 -0.10 -3.04 16 17 C -0.13 -4.14 9.70 22.27 0.22 -3.92 16 18 C -0.11 -2.91 8.71 22.27 0.19 -2.71 16 19 C -0.09 -2.10 4.78 -19.87 -0.09 -2.19 16 20 C -0.05 -0.88 3.09 -11.54 -0.04 -0.91 16 21 C -0.14 -2.13 9.01 71.98 0.65 -1.49 16 22 C -0.14 -2.15 9.01 71.98 0.65 -1.51 16 23 C -0.12 -2.90 9.67 22.27 0.22 -2.68 16 24 C -0.13 -3.79 9.70 22.27 0.22 -3.58 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 3.78 5.32 -2.39 -0.01 3.77 16 33 H 0.02 0.85 8.10 -2.39 -0.02 0.83 16 34 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 36 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 37 H 0.04 1.95 8.08 -2.39 -0.02 1.93 16 38 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 39 H 0.11 3.62 8.06 -2.91 -0.02 3.59 16 40 H 0.13 2.85 7.10 -2.91 -0.02 2.83 16 41 H 0.09 1.26 7.88 -2.39 -0.02 1.24 16 42 H 0.05 0.84 7.39 -2.39 -0.02 0.83 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.05 0.85 7.39 -2.39 -0.02 0.84 16 48 H 0.14 2.67 7.95 -2.91 -0.02 2.65 16 49 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -61.80 391.23 6.71 -55.09 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.86 Total: 20.96 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 5.30 Total: -37.36 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.48 Total: -85.83 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -61.80 6.71 -55.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207524196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.322 kcal (2) G-P(sol) polarization free energy of solvation -61.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds