Wall clock time and date at job start Tue Mar 31 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47395 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47464 * 179.53441 * 4 3 2 6 6 C 1.46893 * 111.00027 * 288.00665 * 5 4 3 7 7 C 1.50701 * 109.47309 * 160.35836 * 6 5 4 8 8 H 1.07993 * 119.99595 * 4.90247 * 7 6 5 9 9 C 1.37876 * 119.99794 * 184.89553 * 7 6 5 10 10 N 1.31518 * 119.99404 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00385 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.46976 * 90.00063 * 11 9 7 13 13 H 1.48501 * 109.47533 * 209.99576 * 11 9 7 14 14 H 1.48497 * 109.47082 * 329.99966 * 11 9 7 15 15 C 1.46898 * 110.99988 * 164.04844 * 5 4 3 16 16 C 1.52998 * 109.47173 * 293.95613 * 15 5 4 17 17 C 1.52999 * 109.46833 * 180.02562 * 16 15 5 18 18 C 1.53009 * 109.47176 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.38232 * 120.00236 * 90.00013 * 19 18 17 21 21 C 1.38238 * 120.00019 * 179.97438 * 20 19 18 22 22 C 1.38228 * 119.99828 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00301 * 0.26946 * 22 21 20 24 24 C 1.38233 * 119.99886 * 269.97361 * 19 18 17 25 25 H 1.09004 * 109.46483 * 299.99659 * 1 2 3 26 26 H 1.08996 * 109.47287 * 59.99291 * 1 2 3 27 27 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46984 * 240.00379 * 2 1 3 29 29 H 1.08996 * 109.47287 * 120.00709 * 2 1 3 30 30 H 1.08998 * 109.47350 * 60.00381 * 3 2 1 31 31 H 1.09005 * 109.47515 * 300.00350 * 3 2 1 32 32 H 1.09002 * 109.47237 * 59.53458 * 4 3 2 33 33 H 1.09004 * 109.47036 * 299.53507 * 4 3 2 34 34 H 1.09005 * 109.46963 * 280.36079 * 6 5 4 35 35 H 1.08999 * 109.47126 * 40.35577 * 6 5 4 36 36 H 0.97006 * 119.99705 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47077 * 173.95414 * 15 5 4 38 38 H 1.08997 * 109.46894 * 53.95761 * 15 5 4 39 39 H 1.08998 * 109.47400 * 60.00419 * 16 15 5 40 40 H 1.08997 * 109.47331 * 299.99880 * 16 15 5 41 41 H 1.08999 * 109.47580 * 60.00297 * 17 16 15 42 42 H 1.08998 * 109.47605 * 299.99615 * 17 16 15 43 43 H 1.08999 * 109.46639 * 59.99701 * 18 17 16 44 44 H 1.08993 * 109.46656 * 299.99790 * 18 17 16 45 45 H 1.07996 * 120.00003 * 359.97438 * 20 19 18 46 46 H 1.08001 * 119.99480 * 179.97438 * 21 20 19 47 47 H 1.08004 * 119.99890 * 180.02562 * 22 21 20 48 48 H 1.08000 * 120.00164 * 179.72394 * 23 22 21 49 49 H 1.08001 * 120.00322 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0598 2.8274 -0.0119 6 6 3.8351 3.4546 -1.3210 7 6 3.8865 4.9537 -1.1754 8 1 4.1460 5.3952 -0.2246 9 6 3.6023 5.7614 -2.2560 10 7 3.6477 7.0697 -2.1289 11 14 3.1529 4.9978 -3.9004 12 1 1.6818 4.8070 -3.9720 13 1 3.5895 5.8962 -4.9993 14 1 3.8298 3.6832 -4.0372 15 6 5.4786 2.8872 0.3639 16 6 5.6382 2.4565 1.8233 17 6 7.1159 2.5193 2.2149 18 6 7.2757 2.0880 3.6742 19 6 8.7311 2.1505 4.0600 20 6 9.2567 3.3148 4.5881 21 6 10.5917 3.3719 4.9425 22 6 11.4008 2.2646 4.7692 23 6 10.8763 1.1019 4.2364 24 6 9.5403 1.0434 3.8863 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9331 0.9216 -0.8867 33 1 3.9338 0.9357 0.8933 34 1 4.6089 3.1304 -2.0169 35 1 2.8573 3.1599 -1.7021 36 1 3.4474 7.6380 -2.8891 37 1 5.8436 3.9073 0.2441 38 1 6.0527 2.2183 -0.2772 39 1 5.2733 1.4364 1.9431 40 1 5.0641 3.1253 2.4645 41 1 7.4805 3.5395 2.0953 42 1 7.6905 1.8507 1.5739 43 1 6.9112 1.0677 3.7934 44 1 6.7011 2.7563 4.3155 45 1 8.6245 4.1798 4.7239 46 1 11.0024 4.2818 5.3548 47 1 12.4437 2.3091 5.0465 48 1 11.5095 0.2382 4.0969 49 1 9.1297 0.1337 3.4736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207610236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:47 Heat of formation + Delta-G solvation = -7.171047 kcal Electronic energy + Delta-G solvation = -22311.761090 eV Core-core repulsion = 19237.271837 eV Total energy + Delta-G solvation = -3074.489253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.40520 -37.66209 -35.26730 -34.16629 -32.49813 -31.36565 -30.98894 -28.94891 -28.20522 -26.10591 -23.57450 -22.74393 -22.67136 -21.30055 -20.72066 -20.62816 -19.53406 -16.86389 -16.81635 -15.67720 -15.37397 -15.26340 -14.75726 -14.62894 -14.37447 -13.93124 -13.62784 -13.48631 -13.30289 -13.18282 -12.78709 -12.66515 -12.40108 -12.19993 -12.06720 -11.94337 -11.47822 -11.34705 -11.18748 -10.95047 -10.84958 -10.83380 -10.70860 -10.57220 -10.43358 -10.29683 -10.13402 -9.87234 -9.66195 -9.23620 -9.02864 -8.74829 -8.52149 -7.30209 -6.01630 -3.97564 1.26135 1.29290 3.29557 3.37192 3.39508 3.68021 4.44698 4.58518 4.73707 4.78400 4.89244 5.01395 5.12440 5.18269 5.20098 5.30821 5.35898 5.39816 5.41152 5.42770 5.55913 5.60229 5.70096 5.87616 5.89992 5.93606 5.94303 5.97350 6.00220 6.08247 6.08890 6.14546 6.15826 6.28878 6.33692 6.36293 6.39953 6.41092 6.56864 6.60951 6.67625 6.75616 6.77785 6.91366 6.93041 7.00363 7.68699 7.98203 8.12416 8.71642 9.08720 9.60962 11.11821 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.003274 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.842952 B = 8551.212460 C =10338.646246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.116 4.116 4 C 0.051 3.949 5 N -0.527 5.527 6 C 0.161 3.839 7 C -0.503 4.503 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.902 5.902 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.064 3.936 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.081 4.081 19 C -0.075 4.075 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.120 4.120 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.064 0.936 34 H -0.014 1.014 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.016 0.984 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 -14.192 12.020 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.077 4.077 5 N -0.251 5.251 6 C 0.035 3.965 7 C -0.541 4.541 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.700 3.300 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.064 4.064 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.119 4.119 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.003 0.997 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.019 -13.747 12.251 20.083 hybrid contribution 0.266 -0.701 -1.644 1.807 sum 8.285 -14.447 10.607 19.745 Atomic orbital electron populations 1.21758 0.96160 1.00895 1.01992 1.21504 0.95634 0.97607 1.01306 1.21606 0.95315 0.95301 1.03128 1.22133 0.95330 0.90952 0.99294 1.61948 1.16527 1.14276 1.32351 1.20200 0.95152 0.96034 0.85102 1.21048 1.46141 0.88311 0.98629 0.90206 1.24896 0.95336 0.94713 0.98462 1.69900 1.50043 1.03023 1.31144 0.86906 0.79187 0.79505 0.84423 1.20179 1.21235 1.19403 1.21989 0.88974 1.01690 0.93790 1.21641 0.94957 1.01166 0.97458 1.21535 0.97224 1.01907 0.94254 1.20665 0.91422 1.02339 0.97453 1.20026 0.96382 0.93599 0.97455 1.21130 0.95500 0.97725 0.99202 1.21157 0.94034 0.98422 1.00083 1.21113 0.99672 0.93597 1.00517 1.21128 0.95414 0.98023 0.99305 1.21073 0.93832 0.98384 1.00515 0.92724 0.92762 0.93315 0.92602 0.92453 0.91294 0.91697 0.96309 0.91750 0.99677 0.95664 0.92764 0.89756 0.96558 0.92619 0.91167 0.91575 0.92290 0.91181 0.90827 0.85914 0.86202 0.86409 0.86333 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.12 -1.86 5.29 -26.73 -0.14 -2.01 16 4 C 0.05 0.88 4.83 -3.82 -0.02 0.86 16 5 N -0.53 -10.99 4.38 -236.07 -1.03 -12.02 16 6 C 0.16 3.95 3.65 -4.98 -0.02 3.93 16 7 C -0.50 -14.40 9.17 -34.44 -0.32 -14.71 16 8 H 0.08 2.49 7.89 -52.49 -0.41 2.08 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 11 Si 0.87 21.75 27.37 -169.99 -4.65 17.10 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.51 6.69 56.52 0.38 -6.14 16 15 C 0.06 1.19 4.78 -3.83 -0.02 1.17 16 16 C -0.11 -1.68 5.18 -26.73 -0.14 -1.82 16 17 C -0.11 -1.41 5.20 -26.73 -0.14 -1.55 16 18 C -0.08 -0.89 5.35 -27.88 -0.15 -1.03 16 19 C -0.07 -0.83 5.13 -104.63 -0.54 -1.37 16 20 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 22 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.17 6.52 -51.93 -0.34 0.84 16 32 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 33 H 0.06 0.98 5.94 -51.93 -0.31 0.67 16 34 H -0.01 -0.36 7.40 -51.93 -0.38 -0.75 16 35 H 0.03 0.62 5.40 -51.93 -0.28 0.34 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 37 H 0.08 1.78 7.32 -51.93 -0.38 1.40 16 38 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 39 H 0.06 0.76 6.28 -51.93 -0.33 0.43 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 49 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -30.78 387.02 -11.60 -42.38 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -9.19 Total: -0.38 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -3.32 Total: -25.86 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.26 Total: -39.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.65 Total: 17.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.78 -11.60 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207610236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.209 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds