Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47395 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47464 * 179.53441 * 4 3 2 6 6 C 1.46893 * 111.00027 * 288.00665 * 5 4 3 7 7 C 1.50701 * 109.47309 * 160.35836 * 6 5 4 8 8 H 1.07993 * 119.99595 * 4.90247 * 7 6 5 9 9 C 1.37876 * 119.99794 * 184.89553 * 7 6 5 10 10 N 1.31518 * 119.99404 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00385 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.46976 * 90.00063 * 11 9 7 13 13 H 1.48501 * 109.47533 * 209.99576 * 11 9 7 14 14 H 1.48497 * 109.47082 * 329.99966 * 11 9 7 15 15 C 1.46898 * 110.99988 * 164.04844 * 5 4 3 16 16 C 1.52998 * 109.47173 * 293.95613 * 15 5 4 17 17 C 1.52999 * 109.46833 * 180.02562 * 16 15 5 18 18 C 1.53009 * 109.47176 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.38232 * 120.00236 * 90.00013 * 19 18 17 21 21 C 1.38238 * 120.00019 * 179.97438 * 20 19 18 22 22 C 1.38228 * 119.99828 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00301 * 0.26946 * 22 21 20 24 24 C 1.38233 * 119.99886 * 269.97361 * 19 18 17 25 25 H 1.09004 * 109.46483 * 299.99659 * 1 2 3 26 26 H 1.08996 * 109.47287 * 59.99291 * 1 2 3 27 27 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46984 * 240.00379 * 2 1 3 29 29 H 1.08996 * 109.47287 * 120.00709 * 2 1 3 30 30 H 1.08998 * 109.47350 * 60.00381 * 3 2 1 31 31 H 1.09005 * 109.47515 * 300.00350 * 3 2 1 32 32 H 1.09002 * 109.47237 * 59.53458 * 4 3 2 33 33 H 1.09004 * 109.47036 * 299.53507 * 4 3 2 34 34 H 1.09005 * 109.46963 * 280.36079 * 6 5 4 35 35 H 1.08999 * 109.47126 * 40.35577 * 6 5 4 36 36 H 0.97006 * 119.99705 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47077 * 173.95414 * 15 5 4 38 38 H 1.08997 * 109.46894 * 53.95761 * 15 5 4 39 39 H 1.08998 * 109.47400 * 60.00419 * 16 15 5 40 40 H 1.08997 * 109.47331 * 299.99880 * 16 15 5 41 41 H 1.08999 * 109.47580 * 60.00297 * 17 16 15 42 42 H 1.08998 * 109.47605 * 299.99615 * 17 16 15 43 43 H 1.08999 * 109.46639 * 59.99701 * 18 17 16 44 44 H 1.08993 * 109.46656 * 299.99790 * 18 17 16 45 45 H 1.07996 * 120.00003 * 359.97438 * 20 19 18 46 46 H 1.08001 * 119.99480 * 179.97438 * 21 20 19 47 47 H 1.08004 * 119.99890 * 180.02562 * 22 21 20 48 48 H 1.08000 * 120.00164 * 179.72394 * 23 22 21 49 49 H 1.08001 * 120.00322 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0598 2.8274 -0.0119 6 6 3.8351 3.4546 -1.3210 7 6 3.8865 4.9537 -1.1754 8 1 4.1460 5.3952 -0.2246 9 6 3.6023 5.7614 -2.2560 10 7 3.6477 7.0697 -2.1289 11 14 3.1529 4.9978 -3.9004 12 1 1.6818 4.8070 -3.9720 13 1 3.5895 5.8962 -4.9993 14 1 3.8298 3.6832 -4.0372 15 6 5.4786 2.8872 0.3639 16 6 5.6382 2.4565 1.8233 17 6 7.1159 2.5193 2.2149 18 6 7.2757 2.0880 3.6742 19 6 8.7311 2.1505 4.0600 20 6 9.2567 3.3148 4.5881 21 6 10.5917 3.3719 4.9425 22 6 11.4008 2.2646 4.7692 23 6 10.8763 1.1019 4.2364 24 6 9.5403 1.0434 3.8863 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9331 0.9216 -0.8867 33 1 3.9338 0.9357 0.8933 34 1 4.6089 3.1304 -2.0169 35 1 2.8573 3.1599 -1.7021 36 1 3.4474 7.6380 -2.8891 37 1 5.8436 3.9073 0.2441 38 1 6.0527 2.2183 -0.2772 39 1 5.2733 1.4364 1.9431 40 1 5.0641 3.1253 2.4645 41 1 7.4805 3.5395 2.0953 42 1 7.6905 1.8507 1.5739 43 1 6.9112 1.0677 3.7934 44 1 6.7011 2.7563 4.3155 45 1 8.6245 4.1798 4.7239 46 1 11.0024 4.2818 5.3548 47 1 12.4437 2.3091 5.0465 48 1 11.5095 0.2382 4.0969 49 1 9.1297 0.1337 3.4736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207610236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -22.422153 kcal Electronic energy + Delta-G solvation = -22312.422428 eV Core-core repulsion = 19237.271837 eV Total energy + Delta-G solvation = -3075.150591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.18236 -39.17646 -36.33303 -35.47375 -34.50190 -32.50756 -31.73082 -30.51091 -29.52378 -27.49629 -24.73507 -24.36935 -23.42146 -22.56464 -21.87331 -21.59709 -21.10700 -19.01355 -17.59427 -16.91682 -16.67021 -16.18012 -16.09183 -15.93809 -15.89092 -15.38588 -14.84088 -14.53939 -14.29086 -14.23632 -14.17765 -13.93846 -13.79122 -13.57300 -13.34844 -13.06621 -12.82650 -12.54925 -12.44314 -12.32078 -12.14239 -12.05288 -11.89702 -11.79735 -11.72597 -11.65166 -11.49771 -11.45958 -11.28172 -11.08786 -10.76071 -9.78922 -9.54424 -8.97301 -8.28536 -6.30511 0.48917 0.53170 1.31873 1.33102 1.43988 2.32958 2.89955 3.03265 3.20364 3.85772 3.93632 4.00493 4.10393 4.12304 4.20158 4.23342 4.31815 4.34915 4.40973 4.46943 4.55067 4.58205 4.67353 4.69557 4.70339 4.81662 4.86077 4.89635 4.91993 4.97097 5.01289 5.03918 5.08960 5.15553 5.16915 5.21517 5.26481 5.31671 5.41525 5.45225 5.48669 5.52315 5.60711 5.61797 5.65606 5.79477 6.03604 6.17346 6.45861 6.69628 6.75392 7.32518 8.88508 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.003274 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.842952 B = 8551.212460 C =10338.646246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.113 4.113 4 C 0.052 3.948 5 N -0.545 5.545 6 C 0.173 3.827 7 C -0.510 4.510 8 H 0.035 0.965 9 C 0.007 3.993 10 N -0.948 5.948 11 Si 0.944 3.056 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.065 3.935 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.073 4.073 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.130 4.130 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.022 0.978 33 H 0.091 0.909 34 H -0.020 1.020 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.045 0.955 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -17.322 12.000 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.151 4.151 4 C -0.075 4.075 5 N -0.269 5.269 6 C 0.046 3.954 7 C -0.549 4.549 8 H 0.053 0.947 9 C -0.190 4.190 10 N -0.589 5.589 11 Si 0.767 3.233 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.179 1.179 15 C -0.063 4.063 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.111 4.111 19 C -0.091 4.091 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.154 4.154 23 C -0.145 4.145 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.109 0.891 34 H -0.002 1.002 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.140 0.860 46 H 0.153 0.847 47 H 0.158 0.842 48 H 0.159 0.841 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.286 -16.896 12.252 22.456 hybrid contribution 0.248 0.324 -1.535 1.589 sum 8.534 -16.573 10.716 21.502 Atomic orbital electron populations 1.21762 0.95343 1.02129 1.01587 1.21456 0.96326 0.95081 1.02458 1.21592 0.94577 0.97522 1.01456 1.22256 0.95960 0.88662 1.00665 1.61872 1.17925 1.16910 1.30170 1.19922 0.94988 0.93465 0.87032 1.21266 1.45722 0.90914 0.96981 0.94667 1.25827 0.95206 0.95080 1.02860 1.70055 1.51452 1.04758 1.32665 0.85763 0.79505 0.79063 0.78920 1.18877 1.20558 1.17891 1.21980 0.87913 0.99761 0.96636 1.21513 0.96321 1.01757 0.94194 1.21432 0.95613 1.01125 0.95921 1.20569 0.91725 1.03053 0.95709 1.20113 0.96521 0.94136 0.98333 1.21314 0.96276 0.97950 0.99961 1.21433 0.93814 0.99470 1.00022 1.21458 1.00774 0.93304 0.99873 1.21467 0.95465 0.98883 0.98667 1.21319 0.94302 0.98633 1.00565 0.92741 0.93653 0.91247 0.92032 0.90642 0.92187 0.94175 0.95949 0.89106 1.00229 0.95256 0.92484 0.93597 0.95831 0.90464 0.92367 0.93337 0.91796 0.89679 0.90944 0.85972 0.84686 0.84200 0.84127 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.43 16 2 C -0.12 -2.63 5.93 30.59 0.18 -2.45 16 3 C -0.11 -3.51 5.29 30.59 0.16 -3.34 16 4 C 0.05 1.70 4.83 86.30 0.42 2.12 16 5 N -0.54 -22.83 4.38 -900.80 -3.95 -26.78 16 6 C 0.17 8.57 3.65 85.56 0.31 8.88 16 7 C -0.51 -30.42 9.17 25.60 0.23 -30.18 16 8 H 0.04 2.34 7.89 -2.91 -0.02 2.32 16 9 C 0.01 0.43 5.47 84.65 0.46 0.90 16 10 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 11 Si 0.94 45.16 27.37 68.60 1.88 47.04 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.25 -11.52 6.69 99.48 0.67 -10.86 16 15 C 0.07 2.47 4.78 86.30 0.41 2.89 16 16 C -0.10 -2.89 5.18 30.59 0.16 -2.73 16 17 C -0.10 -2.58 5.20 30.60 0.16 -2.42 16 18 C -0.07 -1.52 5.35 29.85 0.16 -1.36 16 19 C -0.09 -1.96 5.13 -19.87 -0.10 -2.06 16 20 C -0.14 -2.97 9.70 22.27 0.22 -2.75 16 21 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 22 C -0.14 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.42 6.52 -2.38 -0.02 1.41 16 32 H 0.02 0.72 8.05 -2.39 -0.02 0.71 16 33 H 0.09 2.48 5.94 -2.39 -0.01 2.47 16 34 H -0.02 -1.00 7.40 -2.38 -0.02 -1.02 16 35 H 0.03 1.43 5.40 -2.39 -0.01 1.42 16 36 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 37 H 0.05 2.07 7.32 -2.39 -0.02 2.05 16 38 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 39 H 0.08 1.91 6.28 -2.39 -0.02 1.89 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 1.51 8.09 -2.39 -0.02 1.49 16 44 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 45 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16 46 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 47 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 48 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 49 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -68.81 387.02 3.43 -65.38 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.82 Total: 18.10 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 4.38 Total: -43.57 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -3.65 Total: -86.96 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -68.81 3.43 -65.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207610236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.962 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds