Wall clock time and date at job start Tue Mar 31 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47088 * 2 1 4 4 C 1.53001 * 109.46732 * 239.99699 * 2 1 3 5 5 C 1.50701 * 109.47329 * 65.00544 * 4 2 1 6 6 C 1.38239 * 119.99644 * 269.72540 * 5 4 2 7 7 C 1.38233 * 119.99818 * 180.32138 * 6 5 4 8 8 C 1.38240 * 119.99960 * 359.95191 * 7 6 5 9 9 C 1.50700 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46703 * 240.01831 * 9 8 7 11 11 C 1.52994 * 109.47396 * 0.02562 * 9 8 7 12 12 C 1.53002 * 109.46878 * 120.02337 * 9 8 7 13 13 C 1.38235 * 120.00034 * 0.02562 * 8 7 6 14 14 C 1.38229 * 120.00072 * 89.99438 * 5 4 2 15 15 C 1.53001 * 109.46885 * 119.99960 * 2 1 3 16 16 N 1.46498 * 109.47112 * 295.00033 * 15 2 1 17 17 C 1.46503 * 119.99616 * 269.99775 * 16 15 2 18 18 C 1.36926 * 120.00419 * 89.99997 * 16 15 2 19 19 H 1.08005 * 120.00108 * 22.14897 * 18 16 15 20 20 C 1.38814 * 120.00362 * 202.14802 * 18 16 15 21 21 N 1.31620 * 119.99867 * 11.55190 * 20 18 16 22 22 Si 1.86793 * 120.00222 * 191.54899 * 20 18 16 23 23 H 1.48499 * 109.47197 * 60.00339 * 22 20 18 24 24 H 1.48500 * 109.47181 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47249 * 300.00162 * 22 20 18 26 26 H 1.09001 * 109.46641 * 300.00486 * 1 2 3 27 27 H 1.08997 * 109.47078 * 59.99967 * 1 2 3 28 28 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47437 * 305.00246 * 4 2 1 30 30 H 1.09006 * 109.46795 * 185.00271 * 4 2 1 31 31 H 1.08004 * 119.99922 * 0.26756 * 6 5 4 32 32 H 1.08001 * 120.00039 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47420 * 60.00204 * 10 9 8 34 34 H 1.09001 * 109.47162 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.47303 * 299.99957 * 10 9 8 36 36 H 1.08998 * 109.47547 * 59.99910 * 11 9 8 37 37 H 1.08996 * 109.47155 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.46991 * 299.99957 * 11 9 8 39 39 H 1.08991 * 109.47509 * 59.99709 * 12 9 8 40 40 H 1.09004 * 109.46691 * 179.97438 * 12 9 8 41 41 H 1.09007 * 109.46819 * 299.99153 * 12 9 8 42 42 H 1.07998 * 119.99786 * 179.97438 * 13 8 7 43 43 H 1.08005 * 120.00289 * 359.72437 * 14 5 4 44 44 H 1.09005 * 109.47052 * 55.00085 * 15 2 1 45 45 H 1.09000 * 109.46874 * 174.99508 * 15 2 1 46 46 H 1.09004 * 109.46885 * 94.22934 * 17 16 15 47 47 H 1.08997 * 109.47369 * 214.23009 * 17 16 15 48 48 H 1.09006 * 109.47292 * 334.22910 * 17 16 15 49 49 H 0.96993 * 120.00162 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4381 -0.2089 -3.1030 7 6 0.0755 0.5003 -4.2328 8 6 0.9157 1.4762 -4.7355 9 6 0.5200 2.2498 -5.9668 10 6 1.5641 2.0314 -7.0636 11 6 -0.8451 1.7638 -6.4577 12 6 0.4395 3.7399 -5.6288 13 6 2.1187 1.7424 -4.1088 14 6 2.4815 1.0328 -2.9793 15 6 2.0400 -0.7213 1.2493 16 7 1.6524 0.0354 2.4424 17 6 2.5428 1.0696 2.9751 18 6 0.4580 -0.2241 3.0596 19 1 -0.0271 -1.1786 2.9178 20 6 -0.1294 0.7396 3.8678 21 7 0.3325 1.9720 3.8643 22 14 -1.5755 0.2873 4.9603 23 1 -1.1637 -0.7760 5.9116 24 1 -2.0174 1.4857 5.7178 25 1 -2.6954 -0.2071 4.1197 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2951 30 1 3.1263 -0.7996 -1.2056 31 1 -0.2183 -0.9715 -2.7103 32 1 -0.8644 0.2923 -4.7224 33 1 1.6216 0.9698 -7.3044 34 1 1.2782 2.5912 -7.9541 35 1 2.5366 2.3777 -6.7138 36 1 -1.5888 1.9195 -5.6763 37 1 -1.1310 2.3231 -7.3485 38 1 -0.7877 0.7023 -6.6985 39 1 1.4119 4.0862 -5.2790 40 1 0.1537 4.2995 -6.5196 41 1 -0.3044 3.8955 -4.8474 42 1 2.7753 2.5045 -4.5018 43 1 3.4215 1.2406 -2.4898 44 1 1.6053 -1.7198 1.2952 45 1 3.1263 -0.7996 1.2056 46 1 2.2557 2.0400 2.5700 47 1 2.4644 1.0920 4.0620 48 1 3.5708 0.8464 2.6895 49 1 -0.0781 2.6455 4.4287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207917186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:37 Heat of formation + Delta-G solvation = 15.953080 kcal Electronic energy + Delta-G solvation = -23381.330614 eV Core-core repulsion = 20307.844098 eV Total energy + Delta-G solvation = -3073.486516 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.90013 -37.35020 -35.96344 -33.67316 -31.03906 -30.97092 -29.53201 -27.51205 -27.39016 -26.29520 -25.77956 -25.37430 -22.33500 -22.09173 -20.89374 -19.17038 -19.06633 -16.74242 -16.34878 -15.32948 -14.95629 -14.66011 -14.41783 -14.15079 -13.93805 -13.83356 -13.59362 -13.32625 -13.12637 -12.79287 -12.70534 -12.20185 -12.15193 -11.84807 -11.79979 -11.59122 -11.46901 -11.33201 -11.11193 -11.01888 -10.85527 -10.78080 -10.60319 -10.46253 -10.40304 -10.18868 -10.07512 -9.91794 -9.68645 -9.63717 -8.68327 -8.43897 -8.22504 -6.65406 -5.64592 -3.08224 1.56260 1.61752 3.42315 3.47870 3.48532 3.94159 4.51958 4.56411 4.64336 4.86579 5.10961 5.14987 5.18787 5.19841 5.39429 5.45531 5.49182 5.56687 5.60041 5.60428 5.64414 5.71031 5.71815 5.80130 5.88555 5.91405 5.96037 6.09223 6.11035 6.13508 6.16521 6.28354 6.34769 6.38486 6.49147 6.65737 6.70506 6.77324 6.81012 6.82027 6.94126 6.96778 7.22320 7.26536 7.46461 7.51204 7.80808 7.87664 8.48064 9.32346 9.96285 10.45710 11.40440 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.003324 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.321132 B = 8421.665896 C = 8764.487445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 H 0.061 0.939 4 C -0.080 4.080 5 C -0.065 4.065 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.086 4.086 9 C -0.028 4.028 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.139 4.139 13 C -0.115 4.115 14 C -0.118 4.118 15 C 0.157 3.843 16 N -0.601 5.601 17 C 0.165 3.835 18 C -0.243 4.243 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.909 5.909 22 Si 0.900 3.100 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.284 1.284 26 H 0.083 0.917 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.041 0.959 45 H 0.034 0.966 46 H 0.026 0.974 47 H 0.043 0.957 48 H -0.006 1.006 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -0.737 -20.398 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.079 0.921 4 C -0.118 4.118 5 C -0.065 4.065 6 C -0.131 4.131 7 C -0.139 4.139 8 C -0.086 4.086 9 C -0.028 4.028 10 C -0.194 4.194 11 C -0.200 4.200 12 C -0.196 4.196 13 C -0.133 4.133 14 C -0.136 4.136 15 C 0.029 3.971 16 N -0.324 5.324 17 C 0.020 3.980 18 C -0.373 4.373 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.731 3.269 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.210 1.210 26 H 0.102 0.898 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.013 0.987 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.412 -0.585 -20.258 20.409 hybrid contribution -0.891 -0.015 0.626 1.089 sum 1.521 -0.599 -19.632 19.700 Atomic orbital electron populations 1.21769 0.95127 1.00395 1.01985 1.21799 0.97023 0.99831 0.93552 0.92073 1.20782 1.00470 0.98225 0.92298 1.20000 0.94208 0.96404 0.95924 1.21058 0.96347 1.00239 0.95440 1.21100 0.99526 0.96540 0.96756 1.19674 0.94967 0.97234 0.96700 1.19455 0.95637 0.94920 0.92767 1.21878 0.98351 1.01699 0.97462 1.21951 0.96069 1.01113 1.00898 1.21892 1.02242 0.94100 1.01344 1.20861 0.96420 0.99821 0.96177 1.21012 0.99874 0.96405 0.96303 1.20883 0.96005 0.94353 0.85824 1.43948 1.19370 1.42329 1.26727 1.20774 0.87570 0.91465 0.98176 1.19100 0.97695 0.97298 1.23173 0.91599 1.24984 0.98401 0.94982 1.01515 1.70054 1.42967 1.00935 1.41552 0.86397 0.82701 0.77067 0.80769 1.21225 1.21734 1.21026 0.89777 0.94860 0.94518 0.91585 0.91771 0.86298 0.86170 0.92608 0.92636 0.92504 0.92203 0.92641 0.92359 0.92455 0.92631 0.92377 0.86744 0.86397 0.94044 0.94800 0.95529 0.93802 0.98734 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.33 37.16 0.31 -2.41 16 2 C -0.10 -1.90 2.58 -90.62 -0.23 -2.14 16 3 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.08 -1.21 4.84 -27.88 -0.13 -1.34 16 5 C -0.07 -0.96 4.70 -104.62 -0.49 -1.45 16 6 C -0.11 -1.58 7.98 -39.58 -0.32 -1.90 16 7 C -0.12 -1.54 8.98 -39.58 -0.36 -1.90 16 8 C -0.09 -1.04 4.76 -104.62 -0.50 -1.54 16 9 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 10 C -0.14 -1.16 8.29 37.16 0.31 -0.86 16 11 C -0.14 -1.25 7.13 37.15 0.26 -0.98 16 12 C -0.14 -1.31 8.29 37.16 0.31 -1.00 16 13 C -0.11 -1.45 8.71 -39.58 -0.34 -1.80 16 14 C -0.12 -1.64 9.70 -39.59 -0.38 -2.03 16 15 C 0.16 3.24 5.21 -4.04 -0.02 3.22 16 16 N -0.60 -15.18 2.80 -181.11 -0.51 -15.69 16 17 C 0.16 4.15 9.01 59.85 0.54 4.69 16 18 C -0.24 -6.62 7.62 -15.06 -0.11 -6.74 16 19 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 20 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 21 N -0.91 -26.64 10.58 55.49 0.59 -26.06 16 22 Si 0.90 22.06 29.57 -169.99 -5.03 17.03 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H 0.08 2.06 6.35 -51.93 -0.33 1.73 16 27 H 0.03 0.62 6.28 -51.93 -0.33 0.29 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.12 1.58 8.05 -52.48 -0.42 1.16 16 32 H 0.12 1.32 5.90 -52.49 -0.31 1.01 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 36 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 39 H 0.06 0.54 7.39 -51.93 -0.38 0.15 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.11 1.24 7.10 -52.49 -0.37 0.87 16 43 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 45 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 46 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 47 H 0.04 1.18 7.18 -51.93 -0.37 0.81 16 48 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -29.29 375.58 -9.74 -39.03 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -9.07 Total: -1.29 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.39 Total: -18.68 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.08 Total: -41.75 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.29 -9.74 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207917186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.981 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds