Wall clock time and date at job start Tue Mar 31 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47088 * 2 1 4 4 C 1.53001 * 109.46732 * 239.99699 * 2 1 3 5 5 C 1.50701 * 109.47329 * 65.00544 * 4 2 1 6 6 C 1.38239 * 119.99644 * 269.72540 * 5 4 2 7 7 C 1.38233 * 119.99818 * 180.32138 * 6 5 4 8 8 C 1.38240 * 119.99960 * 359.95191 * 7 6 5 9 9 C 1.50700 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46703 * 240.01831 * 9 8 7 11 11 C 1.52994 * 109.47396 * 0.02562 * 9 8 7 12 12 C 1.53002 * 109.46878 * 120.02337 * 9 8 7 13 13 C 1.38235 * 120.00034 * 0.02562 * 8 7 6 14 14 C 1.38229 * 120.00072 * 89.99438 * 5 4 2 15 15 C 1.53001 * 109.46885 * 119.99960 * 2 1 3 16 16 N 1.46498 * 109.47112 * 295.00033 * 15 2 1 17 17 C 1.46503 * 119.99616 * 269.99775 * 16 15 2 18 18 C 1.36926 * 120.00419 * 89.99997 * 16 15 2 19 19 H 1.08005 * 120.00108 * 22.14897 * 18 16 15 20 20 C 1.38814 * 120.00362 * 202.14802 * 18 16 15 21 21 N 1.31620 * 119.99867 * 11.55190 * 20 18 16 22 22 Si 1.86793 * 120.00222 * 191.54899 * 20 18 16 23 23 H 1.48499 * 109.47197 * 60.00339 * 22 20 18 24 24 H 1.48500 * 109.47181 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47249 * 300.00162 * 22 20 18 26 26 H 1.09001 * 109.46641 * 300.00486 * 1 2 3 27 27 H 1.08997 * 109.47078 * 59.99967 * 1 2 3 28 28 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47437 * 305.00246 * 4 2 1 30 30 H 1.09006 * 109.46795 * 185.00271 * 4 2 1 31 31 H 1.08004 * 119.99922 * 0.26756 * 6 5 4 32 32 H 1.08001 * 120.00039 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47420 * 60.00204 * 10 9 8 34 34 H 1.09001 * 109.47162 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.47303 * 299.99957 * 10 9 8 36 36 H 1.08998 * 109.47547 * 59.99910 * 11 9 8 37 37 H 1.08996 * 109.47155 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.46991 * 299.99957 * 11 9 8 39 39 H 1.08991 * 109.47509 * 59.99709 * 12 9 8 40 40 H 1.09004 * 109.46691 * 179.97438 * 12 9 8 41 41 H 1.09007 * 109.46819 * 299.99153 * 12 9 8 42 42 H 1.07998 * 119.99786 * 179.97438 * 13 8 7 43 43 H 1.08005 * 120.00289 * 359.72437 * 14 5 4 44 44 H 1.09005 * 109.47052 * 55.00085 * 15 2 1 45 45 H 1.09000 * 109.46874 * 174.99508 * 15 2 1 46 46 H 1.09004 * 109.46885 * 94.22934 * 17 16 15 47 47 H 1.08997 * 109.47369 * 214.23009 * 17 16 15 48 48 H 1.09006 * 109.47292 * 334.22910 * 17 16 15 49 49 H 0.96993 * 120.00162 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4381 -0.2089 -3.1030 7 6 0.0755 0.5003 -4.2328 8 6 0.9157 1.4762 -4.7355 9 6 0.5200 2.2498 -5.9668 10 6 1.5641 2.0314 -7.0636 11 6 -0.8451 1.7638 -6.4577 12 6 0.4395 3.7399 -5.6288 13 6 2.1187 1.7424 -4.1088 14 6 2.4815 1.0328 -2.9793 15 6 2.0400 -0.7213 1.2493 16 7 1.6524 0.0354 2.4424 17 6 2.5428 1.0696 2.9751 18 6 0.4580 -0.2241 3.0596 19 1 -0.0271 -1.1786 2.9178 20 6 -0.1294 0.7396 3.8678 21 7 0.3325 1.9720 3.8643 22 14 -1.5755 0.2873 4.9603 23 1 -1.1637 -0.7760 5.9116 24 1 -2.0174 1.4857 5.7178 25 1 -2.6954 -0.2071 4.1197 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2951 30 1 3.1263 -0.7996 -1.2056 31 1 -0.2183 -0.9715 -2.7103 32 1 -0.8644 0.2923 -4.7224 33 1 1.6216 0.9698 -7.3044 34 1 1.2782 2.5912 -7.9541 35 1 2.5366 2.3777 -6.7138 36 1 -1.5888 1.9195 -5.6763 37 1 -1.1310 2.3231 -7.3485 38 1 -0.7877 0.7023 -6.6985 39 1 1.4119 4.0862 -5.2790 40 1 0.1537 4.2995 -6.5196 41 1 -0.3044 3.8955 -4.8474 42 1 2.7753 2.5045 -4.5018 43 1 3.4215 1.2406 -2.4898 44 1 1.6053 -1.7198 1.2952 45 1 3.1263 -0.7996 1.2056 46 1 2.2557 2.0400 2.5700 47 1 2.4644 1.0920 4.0620 48 1 3.5708 0.8464 2.6895 49 1 -0.0781 2.6455 4.4287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207917186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:36 Heat of formation + Delta-G solvation = 3.956705 kcal Electronic energy + Delta-G solvation = -23381.850816 eV Core-core repulsion = 20307.844098 eV Total energy + Delta-G solvation = -3074.006717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87316 -38.68020 -37.34228 -35.25800 -32.88950 -31.96037 -30.89661 -28.26519 -28.08102 -27.99720 -27.63636 -26.90139 -23.76803 -23.14098 -22.37321 -20.65940 -20.01000 -18.72652 -17.40232 -16.77477 -16.35521 -15.84671 -15.68401 -15.57868 -15.12371 -15.05898 -14.88279 -14.56428 -14.35334 -14.21492 -13.89197 -13.42893 -13.33312 -13.03683 -12.83101 -12.80007 -12.76437 -12.63824 -12.53325 -12.48759 -12.33501 -12.17069 -12.05578 -11.91316 -11.84510 -11.67698 -11.57431 -11.35833 -11.26958 -11.25049 -10.54063 -9.71216 -9.28817 -8.69963 -7.76856 -5.22042 0.53383 0.59292 1.46532 1.48145 1.54358 2.54204 2.91266 3.36950 3.70808 3.78018 3.85280 4.03860 4.08960 4.14570 4.22410 4.28826 4.42644 4.50245 4.53413 4.63068 4.66731 4.77723 4.79864 4.85572 4.87793 4.90582 4.91159 4.98816 5.03066 5.04344 5.05590 5.12271 5.19673 5.20943 5.25368 5.29836 5.35429 5.40130 5.41253 5.45987 5.59140 5.67704 5.68462 5.74347 5.78429 5.81402 5.89119 6.22674 6.38751 7.21248 7.94212 8.38112 9.26972 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.003324 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.321132 B = 8421.665896 C = 8764.487445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 H 0.035 0.965 4 C -0.067 4.067 5 C -0.085 4.085 6 C -0.124 4.124 7 C -0.129 4.129 8 C -0.085 4.085 9 C -0.029 4.029 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.138 4.138 13 C -0.121 4.121 14 C -0.130 4.130 15 C 0.153 3.847 16 N -0.617 5.617 17 C 0.179 3.821 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.056 4.056 21 N -0.941 5.941 22 Si 0.960 3.040 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.277 1.277 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.048 0.952 45 H 0.055 0.945 46 H -0.002 1.002 47 H 0.017 0.983 48 H 0.027 0.973 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -1.630 -22.459 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.110 4.110 3 H 0.053 0.947 4 C -0.105 4.105 5 C -0.085 4.085 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.085 4.085 9 C -0.029 4.029 10 C -0.191 4.191 11 C -0.200 4.200 12 C -0.195 4.195 13 C -0.139 4.139 14 C -0.148 4.148 15 C 0.027 3.973 16 N -0.340 5.340 17 C 0.034 3.966 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.251 4.251 21 N -0.589 5.589 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.203 1.203 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.016 0.984 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.460 -1.511 -22.345 22.531 hybrid contribution -0.870 0.256 1.159 1.472 sum 1.590 -1.255 -21.186 21.283 Atomic orbital electron populations 1.21605 0.96077 1.00422 0.99966 1.21538 0.95985 0.98575 0.94853 0.94677 1.20610 1.01251 0.98154 0.90460 1.20010 0.94976 0.97251 0.96296 1.21212 0.96280 1.00703 0.96029 1.21354 1.00304 0.96488 0.96515 1.20033 0.94469 0.96791 0.97256 1.19530 0.96612 0.94650 0.92096 1.21857 0.97903 1.01830 0.97533 1.21949 0.95215 1.01539 1.01282 1.21893 1.01779 0.94157 1.01716 1.21100 0.96968 0.99955 0.95841 1.21204 1.00206 0.96511 0.96902 1.21078 0.97382 0.94029 0.84838 1.44191 1.18876 1.42428 1.28487 1.20508 0.89245 0.90505 0.96359 1.19362 0.98041 0.97137 1.22607 0.91338 1.25683 1.01087 0.95016 1.03265 1.70231 1.44405 1.01741 1.42498 0.85442 0.80063 0.76496 0.79107 1.20547 1.22387 1.20293 0.94558 0.93937 0.93364 0.90457 0.90374 0.85946 0.84607 0.92848 0.91062 0.92513 0.92877 0.91140 0.92082 0.92598 0.90888 0.93757 0.85151 0.85879 0.93360 0.92703 0.98352 0.96401 0.95443 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.33 71.98 0.60 -4.34 16 2 C -0.09 -3.28 2.58 -10.79 -0.03 -3.31 16 3 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.07 -1.91 4.84 29.85 0.14 -1.77 16 5 C -0.09 -2.41 4.70 -19.87 -0.09 -2.50 16 6 C -0.12 -3.33 7.98 22.27 0.18 -3.15 16 7 C -0.13 -3.09 8.98 22.27 0.20 -2.89 16 8 C -0.09 -1.94 4.76 -19.86 -0.09 -2.03 16 9 C -0.03 -0.50 0.85 -52.93 -0.05 -0.54 16 10 C -0.13 -1.94 8.29 71.98 0.60 -1.35 16 11 C -0.14 -2.16 7.13 71.98 0.51 -1.65 16 12 C -0.14 -2.35 8.29 71.98 0.60 -1.75 16 13 C -0.12 -2.88 8.71 22.27 0.19 -2.69 16 14 C -0.13 -3.48 9.70 22.27 0.22 -3.27 16 15 C 0.15 6.13 5.21 86.38 0.45 6.58 16 16 N -0.62 -31.23 2.80 -726.92 -2.04 -33.26 16 17 C 0.18 9.12 9.01 127.77 1.15 10.27 16 18 C -0.24 -13.23 7.62 84.04 0.64 -12.59 16 19 H 0.07 3.66 7.85 -2.91 -0.02 3.64 16 20 C -0.06 -3.20 5.13 84.86 0.43 -2.76 16 21 N -0.94 -56.81 10.58 21.65 0.23 -56.58 16 22 Si 0.96 45.93 29.57 68.60 2.03 47.96 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H 0.04 1.79 6.35 -2.39 -0.02 1.78 16 27 H 0.04 1.58 6.28 -2.39 -0.01 1.57 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 30 H 0.08 2.01 8.09 -2.38 -0.02 1.99 16 31 H 0.12 3.10 8.05 -2.91 -0.02 3.07 16 32 H 0.14 2.74 5.90 -2.91 -0.02 2.73 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.82 7.39 -2.38 -0.02 0.80 16 36 H 0.05 0.87 7.51 -2.39 -0.02 0.85 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.89 7.51 -2.39 -0.02 0.87 16 39 H 0.05 0.95 7.39 -2.39 -0.02 0.93 16 40 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.04 0.86 8.14 -2.38 -0.02 0.85 16 42 H 0.13 2.61 7.10 -2.91 -0.02 2.59 16 43 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 44 H 0.05 1.88 8.03 -2.38 -0.02 1.86 16 45 H 0.05 1.97 7.86 -2.39 -0.02 1.95 16 46 H 0.00 -0.10 7.42 -2.38 -0.02 -0.12 16 47 H 0.02 0.96 7.18 -2.39 -0.02 0.95 16 48 H 0.03 1.18 7.84 -2.38 -0.02 1.17 16 49 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -63.61 375.58 6.75 -56.86 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.88 Total: 14.76 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 5.65 Total: -29.73 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -1.81 Total: -89.84 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -63.61 6.75 -56.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207917186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.818 kcal (2) G-P(sol) polarization free energy of solvation -63.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds