Wall clock time and date at job start Tue Mar 31 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 C 1.50699 * 109.46887 * 119.99598 * 2 1 3 5 5 C 1.38233 * 119.99962 * 120.00404 * 4 2 1 6 6 C 1.38234 * 120.00056 * 180.02562 * 5 4 2 7 7 C 1.38232 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99720 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47267 * 90.00141 * 8 7 6 10 10 H 1.08992 * 109.47135 * 54.99548 * 9 8 7 11 11 C 1.53000 * 109.46850 * 294.99696 * 9 8 7 12 12 C 1.53004 * 109.46799 * 174.99864 * 9 8 7 13 13 N 1.46898 * 109.46619 * 184.99872 * 12 9 8 14 14 C 1.46901 * 111.00443 * 66.04574 * 13 12 9 15 15 C 1.46906 * 110.99820 * 189.99887 * 13 12 9 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99253 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00341 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47238 * 59.99702 * 20 18 16 22 22 H 1.48503 * 109.47230 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47102 * 299.99648 * 20 18 16 24 24 C 1.38232 * 120.00011 * 0.24984 * 7 6 5 25 25 C 1.38232 * 120.00097 * 300.02461 * 4 2 1 26 26 H 1.08994 * 109.47539 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.47251 * 60.00632 * 1 2 3 28 28 H 1.09008 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47034 * 239.99880 * 2 1 3 30 30 H 1.08999 * 109.46904 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47166 * 299.99430 * 3 2 1 32 32 H 1.08996 * 109.47448 * 60.00133 * 3 2 1 33 33 H 1.07998 * 119.99891 * 359.97438 * 5 4 2 34 34 H 1.08004 * 119.99874 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.46864 * 329.99230 * 8 7 6 36 36 H 1.09004 * 109.46213 * 209.99989 * 8 7 6 37 37 H 1.08991 * 109.47406 * 60.00123 * 11 9 8 38 38 H 1.08998 * 109.46763 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.46807 * 300.00020 * 11 9 8 40 40 H 1.08994 * 109.47270 * 64.99737 * 12 9 8 41 41 H 1.08999 * 109.47017 * 304.99614 * 12 9 8 42 42 H 1.09002 * 109.47401 * 183.95136 * 14 13 12 43 43 H 1.09001 * 109.46874 * 63.95149 * 14 13 12 44 44 H 1.09004 * 109.46970 * 303.95282 * 14 13 12 45 45 H 1.08997 * 109.46995 * 289.99871 * 15 13 12 46 46 H 1.09001 * 109.46848 * 49.99877 * 15 13 12 47 47 H 0.96999 * 119.99606 * 179.97438 * 19 18 16 48 48 H 1.08007 * 119.99875 * 179.72714 * 24 7 6 49 49 H 1.07998 * 120.00221 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8270 -1.8342 1.1038 6 6 3.2873 -2.4861 2.2325 7 6 2.9533 -2.0138 3.4880 8 6 3.4547 -2.7249 4.7185 9 6 4.8028 -2.1336 5.1355 10 1 4.7020 -1.0564 5.2668 11 6 5.8428 -2.4201 4.0506 12 6 5.2522 -2.7683 6.4532 13 7 6.4851 -2.1166 6.9150 14 6 6.2376 -0.7128 7.2697 15 6 7.0765 -2.8483 8.0432 16 6 8.4518 -2.3031 8.3301 17 1 8.8469 -1.4937 7.7340 18 6 9.2058 -2.8375 9.3533 19 7 8.7244 -3.8228 10.0792 20 14 10.9102 -2.1612 9.7092 21 1 10.8091 -0.7201 10.0530 22 1 11.5081 -2.9010 10.8497 23 1 11.7683 -2.3246 8.5083 24 6 2.1547 -0.8926 3.6147 25 6 1.6979 -0.2383 2.4860 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.0877 -2.2034 0.1229 34 1 3.9080 -3.3645 2.1335 35 1 3.5749 -3.7862 4.5011 36 1 2.7364 -2.5990 5.5287 37 1 5.5226 -1.9681 3.1119 38 1 6.8033 -1.9993 4.3479 39 1 5.9435 -3.4975 3.9193 40 1 5.4386 -3.8311 6.2996 41 1 4.4712 -2.6409 7.2028 42 1 7.1790 -0.2351 7.5411 43 1 5.5503 -0.6673 8.1145 44 1 5.7997 -0.1942 6.4168 45 1 6.4468 -2.7276 8.9246 46 1 7.1503 -3.9063 7.7915 47 1 9.2549 -4.1991 10.7989 48 1 1.8901 -0.5262 4.5957 49 1 1.0770 0.6398 2.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207931383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:15 Heat of formation + Delta-G solvation = -5.670261 kcal Electronic energy + Delta-G solvation = -22683.222505 eV Core-core repulsion = 19608.798331 eV Total energy + Delta-G solvation = -3074.424174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87581 -37.58175 -35.94502 -33.95964 -32.31099 -31.03025 -30.02520 -27.42091 -27.19404 -26.66205 -26.19627 -23.91259 -22.94745 -22.15892 -20.54984 -19.96787 -19.28594 -16.60167 -16.28172 -15.60659 -15.29025 -14.91755 -14.71330 -14.34858 -14.08173 -14.03753 -13.75156 -13.51385 -13.43083 -13.15374 -12.83557 -12.55113 -12.30411 -12.03994 -11.89782 -11.83597 -11.57072 -11.41124 -11.25921 -11.06831 -11.00133 -10.85164 -10.81196 -10.73093 -10.65822 -10.46009 -10.31928 -10.10446 -9.69601 -9.15768 -8.91536 -8.46571 -8.40083 -7.15684 -5.99636 -4.00669 1.31956 1.38770 3.35251 3.38953 3.42165 3.70964 4.44048 4.45420 4.55815 4.81834 4.89277 4.92824 4.97733 5.09901 5.17461 5.22159 5.33241 5.35662 5.39447 5.45946 5.50861 5.54153 5.61146 5.65011 5.69861 5.80531 5.93072 5.93709 5.95757 5.99706 6.07999 6.10708 6.18647 6.24297 6.32911 6.40401 6.45373 6.47740 6.56914 6.64271 6.73628 6.81651 6.85771 7.00305 7.34340 7.39671 7.84027 8.13896 8.26119 8.60818 9.06931 9.63234 11.11287 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.002525 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.020263 B =11086.339656 C =11292.767746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.088 4.088 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.071 4.071 8 C -0.080 4.080 9 C -0.080 4.080 10 H 0.069 0.931 11 C -0.137 4.137 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.037 3.963 15 C 0.193 3.807 16 C -0.505 4.505 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.117 4.117 25 C -0.114 4.114 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.071 0.929 43 H 0.009 0.991 44 H 0.046 0.954 45 H -0.011 1.011 46 H 0.028 0.972 47 H 0.261 0.739 48 H 0.119 0.881 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 6.349 -19.053 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.088 4.088 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.117 4.117 9 C -0.099 4.099 10 H 0.087 0.913 11 C -0.194 4.194 12 C -0.069 4.069 13 N -0.262 5.262 14 C -0.112 4.112 15 C 0.068 3.932 16 C -0.544 4.544 17 H 0.080 0.920 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.135 4.135 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.065 0.935 45 H 0.007 0.993 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.137 0.863 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.192 6.215 -19.272 25.927 hybrid contribution 0.364 0.250 1.062 1.150 sum -15.828 6.465 -18.210 24.978 Atomic orbital electron populations 1.21855 0.94523 1.01920 1.01774 1.20102 0.95792 0.96028 0.95504 1.21857 1.01373 0.95153 1.01764 1.19776 0.98459 0.96049 0.94490 1.21010 0.98401 0.95784 0.98424 1.21061 0.99728 1.00230 0.91903 1.19920 0.96476 0.95663 0.95004 1.20719 0.97247 0.99371 0.94403 1.21122 0.92987 1.00103 0.95666 0.91313 1.21744 0.99812 1.00934 0.96890 1.22090 0.91803 0.98669 0.94304 1.62072 1.23452 1.02011 1.38667 1.22237 1.00684 0.91015 0.97242 1.19719 0.94080 0.93792 0.85618 1.21136 1.00067 1.18350 1.14850 0.91964 1.24998 0.98437 0.95188 0.96111 1.69954 1.37740 1.25462 1.20809 0.86561 0.84219 0.78903 0.77713 1.20327 1.21398 1.20171 1.21042 0.98273 0.95686 0.98477 1.20891 1.00505 0.99825 0.91972 0.92489 0.92562 0.92603 0.90699 0.92459 0.92572 0.92461 0.86498 0.86069 0.91017 0.91324 0.93733 0.91152 0.93434 0.91543 0.96276 0.91060 0.97250 0.93550 0.99318 0.95347 0.92933 0.86290 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.01 37.16 0.33 -0.65 16 2 C -0.06 -0.43 3.09 -91.77 -0.28 -0.72 16 3 C -0.14 -1.05 9.01 37.16 0.33 -0.72 16 4 C -0.09 -0.86 4.78 -104.63 -0.50 -1.36 16 5 C -0.12 -1.22 9.67 -39.58 -0.38 -1.60 16 6 C -0.11 -1.24 7.96 -39.58 -0.32 -1.56 16 7 C -0.07 -0.83 4.71 -104.62 -0.49 -1.33 16 8 C -0.08 -0.98 4.84 -27.88 -0.13 -1.12 16 9 C -0.08 -1.18 2.30 -90.62 -0.21 -1.39 16 10 H 0.07 1.05 6.26 -51.93 -0.33 0.73 16 11 C -0.14 -2.02 8.65 37.16 0.32 -1.70 16 12 C 0.06 1.09 4.35 -3.82 -0.02 1.07 16 13 N -0.54 -11.74 4.21 -244.37 -1.03 -12.77 16 14 C 0.04 0.74 9.17 60.07 0.55 1.29 16 15 C 0.19 5.12 4.72 -4.97 -0.02 5.10 16 16 C -0.51 -14.40 8.52 -34.44 -0.29 -14.69 16 17 H 0.06 1.75 7.10 -52.48 -0.37 1.38 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 20 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 25 C -0.11 -1.17 8.71 -39.58 -0.34 -1.51 16 26 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 33 H 0.12 1.00 7.95 -52.49 -0.42 0.58 16 34 H 0.12 1.25 8.04 -52.48 -0.42 0.83 16 35 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.04 0.60 6.27 -51.93 -0.33 0.27 16 38 H 0.07 1.20 7.75 -51.93 -0.40 0.80 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 41 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 42 H 0.07 1.51 6.86 -51.93 -0.36 1.16 16 43 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.05 0.80 6.21 -51.93 -0.32 0.47 16 45 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 46 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 49 H 0.12 1.01 7.10 -52.49 -0.37 0.63 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -30.08 382.68 -10.58 -40.65 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -9.09 Total: -3.05 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.94 Total: -21.13 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.29 Total: -39.11 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.08 -10.58 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207931383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.982 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds